A novel approach to the retrieval of structural and dynamic information from residual dipolar couplings using several oriented media in biomolecular NMR spectroscopy

Journal of the American Chemical Society

Volumn 124, Issue 40, 2002, Pages 12020-12030

  Tolman, Joel R ^a  

^a Institut de chimie moleculaire et biologique Ecole Polytechnique Federale de Lausanne   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

DIPOLAR COUPLINGS;

COUPLINGS; DATA ACQUISITION; NUCLEAR MAGNETIC RESONANCE; PROTEINS;

MOLECULAR STRUCTURE;

NITROGEN 15; UBIQUITIN;

ACCURACY; ANALYTIC METHOD; ARTICLE; CHEMICAL STRUCTURE; DIPOLE; MACROMOLECULE; MATHEMATICAL MODEL; MOLECULAR DYNAMICS; MOLECULAR INTERACTION; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; SIMULATION;

COMPUTER SIMULATION; MODELS, THEORETICAL; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; UBIQUITIN;

EID: 0037048594     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja0261123     Document Type: Article

References (33)

1. Prestegard, J. H.; Al-Hashimi, H. M.; Tolman, J. R. Q. Rev. Biophys. 2000, 33, 371-424.
2. Prestegard, J. H.; Kishore, A. I. Curr. Opin. Chem. Biol. 2001, 5, 584-590.
3. Tolman, J. R. Curr. Opin. Struct. Biol. 2001, 11, 532-539.
4. Bax, A.; Kontaxis, G.; Tjandra, N. Methods Enzymol. 2001, 339, 127-174.
5. de Alba, E.; Tjandra, N. Prog. Nucl. Magn. Reson. Spectrosc. 2002, 40, 175-197.
6. Moltke, S.; Grzesiek, S. J. Biomol. NMR 1999, 15, 77-82.
7. Tolman, J. R.; Al-Hashimi, H. M.; Kay, L. E.; Prestegard, J. H. J. Am. Chem. Soc. 2001, 123, 1416-1424.
8. Hus, J. C.; Marion, D.; Blackledge, M. J. Am. Chem. Soc. 2001, 123, 1541-1542.
9. Meiler, J.; Prompers, J. J.; Peti, W.; Griesinger, C.; Bruschweiler, R. J. Am. Chem. Soc. 2001, 123, 6098-6107.
10. Sass, H.-J.; Musco, G.; Stahl, S. J.; Wingfield, P. T.; Grzesiek, S., J. Biomol. NMR 2001, 21, 275-280.
11. Peti, W.; Meiler, J.; Bruschweiler, R.; Griesinger, C. J. Am. Chem. Soc. 2002, 124, 5822-5833.
12. Tolman, J. R.; Flanagan, J. M.; Kennedy, M. A.; Prestegard, J. H. Nat. Struct. Biol. 1997, 4, 292-297.
13. Ramirez, B. E.; Bax, A. J. Am. Chem. Soc. 1998, 120, 9106-9107.
14. Al-Hashimi, H. M.; Valafar, H.; Terrell, M.; Zartler, E. R.; Eidsness, M. K.; Prestegard, J. H. J. Magn. Reson. 2000, 143, 402-406.
15. Saupe, A. Z. Naturforsh. 1964, 19a, 161.
16. Prestegard, J. H.; Tolman, J. R.; Al-Hashimi, H. M.; Andrec, M. Protein structure and dynamics from field induced residual dipolar couplings.; Krishna, N. R., Berliner, L. J., Eds.; Plenum: New York, 1999; Vol. 17, pp 311-355.
17. Hus, J. C.; Marion, D.; Blackledge, M. J. Mol. Biol. 2000, 298, 927-936.
18. Burnett, M. N.; Johnson, C. K. ORTEP-III: Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure Illustrations: Oak Ridge National Laboratory: Oak Ridge, TN, 1996.
19. Albert, A. Regression and the Moore-Penrose Pseudoinverse; Academic Press: New York, 1972.
20. Ben-Israel, A.; Greville, T. N. E. Generalized Inverses: Theory and Applications; John Wiley & Sons: New York, 1974.
21. Losonczi, J. A.; Andrec, M.; Fischer, M. W. F.; Prestegard, J. H. J. Magn. Reson. 1999, 138, 334-342.
22. Press, W. H.; Teukolsky, S. A.; Vetterling, W. T.; Flannery, B. P. Numerical recepies in C.: Cambridge University Press: Cambridge, 1992.
23. Cornilescu, G. Marquardt, J. L.; Ottiger, M.; Bax, A. J. Am. Chem. Soc. 1998, 120, 6836-6837.
24. Case, D. A. J. Biomol. NMR 1999, 15, 95-102.
25. Sass, J.; Cordier, F.; Hoffmann, A.; Cousin, A.; Omichinski, J. G.; Lowen, H.; Grzesiek, S. J. Am. Chem. Soc. 1999, 121, 2047-2055.
26. Koenig, B. W.; Hu, J. S.; Ottiger, M.; Bose, S.; Hendler, R. W.; Bax, A. J. Am. Chem. Soc. 1999, 121, 1385-1386.
27. Tolman, J. R.; Prestegard, J. H. J. Magn. Reson., Ser. B 1996, 112, 245-252.
28. Cutting, B.; Tolman, J. R.; Nanchen, S.; Bodenhausen, G. J. Biomol. NMR 2002, 23, 195-200.
29. Delaglio, F.; Grzesiek, S.; Vuister, G. W.; Zhu, G.; Pfeifer, J.; Bax, A. J. Biomol. NMR 1995, 6, 277-293.
30. Ottiger, M.; Bax, A. J. Am. Chem. Soc. 1998, 120, 12334-12341.
31. Vijaykumar, S.; Bugg, C. E.; Cook, W. J. J. Mol. Biol. 1987, 194, 531-544.
32. Ramage, R.; Green, J.; Muir, T. W.; Ogunjobi, O. M.; Love, S.; Shaw, K. Biochem. J. 1994, 299, 151-158.
33. Tjandra, N.; Feller, S. E.; Pastor, R. W.; Bax, A. J. Am. Chem. Soc. 1995, 117, 12562-12566.