-
1
-
-
0027278557
-
Instability and decay of the primary structure of DNA
-
DOI 10.1038/362709a0
-
Lindahl, T. (1993) Instability and decay of the primary structure of DNA. Nature 362, 709-715. (Pubitemid 23125973)
-
(1993)
Nature
, vol.362
, Issue.6422
, pp. 709-715
-
-
Lindahl, T.1
-
3
-
-
0001473891
-
Chemistry of glycosylases and endonucleases involved in base-excision repair
-
David, S. S., and Williams, S. D. (1998) Chemistry of Glycosylases and Endonucleases Involved in Base-Excision Repair. Chem. Rev. 98, 1221-1262.
-
(1998)
Chem. Rev.
, vol.98
, pp. 1221-1262
-
-
David, S.S.1
Williams, S.D.2
-
4
-
-
0029842307
-
Reconstitution of DNA base excision-repair with purified human proteins: Interaction between DNA polymerase β and the XRCC1 protein
-
Kubota, Y., Nash, R. A., Klungland, A., Schär, P., Barnes, D. E., and Lindahl, T. (1996) Reconstitution of DNA base excision-repair with purified human proteins: Interaction between DNA polymerase ß and the XRCC1 protein. EMBO J. 15, 6662-6670. (Pubitemid 26413798)
-
(1996)
EMBO Journal
, vol.15
, Issue.23
, pp. 6662-6670
-
-
Kubota, Y.1
Nash, R.A.2
Klungland, A.3
Schar, P.4
Barnes, D.E.5
Lindahl, T.6
-
5
-
-
64549102042
-
Recognition and Processing of a New Repertoire of DNA Substrates by Human 3-Methyladenine DNA Glycosylase (AAG)
-
Lee, C.-Y. I., Delaney, J. C., Kartalou, M., Lingaraju, G. M., Maor-Shoshani, A., Essigmann, J. M., and Samson, L. D. (2009) Recognition and Processing of a New Repertoire of DNA Substrates by Human 3-Methyladenine DNA Glycosylase (AAG). Biochemistry 48, 1850-1861.
-
(2009)
Biochemistry
, vol.48
, pp. 1850-1861
-
-
Lee, C.-Y.I.1
Delaney, J.C.2
Kartalou, M.3
Lingaraju, G.M.4
Maor-Shoshani, A.5
Essigmann, J.M.6
Samson, L.D.7
-
6
-
-
1642411206
-
Dissecting the Broad Substrate Specificity of Human 3-Methyladenine-DNA Glycosylase
-
DOI 10.1074/jbc.M312232200
-
O'Brien, P. J., and Ellenberger, T. (2004) Dissecting the broad substrate specificity of human 3-methyladenine-DNA glycosylase. J. Biol. Chem. 279, 9750-9757. (Pubitemid 38379541)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.11
, pp. 9750-9757
-
-
O'Brien, P.J.1
Ellenberger, T.2
-
7
-
-
74049108712
-
Chemical biology of mutagenesis and DNA repair: Cellular responses to DNA alkylation
-
Shrivastav, N., Li, D., and Essigmann, J. M. (2010) Chemical biology of mutagenesis and DNA repair: Cellular responses to DNA alkylation. Carcinogenesis 31, 59-70.
-
(2010)
Carcinogenesis
, vol.31
, pp. 59-70
-
-
Shrivastav, N.1
Li, D.2
Essigmann, J.M.3
-
8
-
-
0034610336
-
Molecular basis for discriminating between normal and damaged bases by the human alkyladenine glycosylase, AAG
-
Lau, A. Y., Wyatt, M. D., Glassner, B. J., Samson, L. D., and Ellenberger, T. (2000) Molecular basis for discriminating between normal and damaged bases by the human alkyladenine glycosylase, AAG. Proc. Natl. Acad. Sci. U.S.A. 97, 13573-13578.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 13573-13578
-
-
Lau, A.Y.1
Wyatt, M.D.2
Glassner, B.J.3
Samson, L.D.4
Ellenberger, T.5
-
9
-
-
79953861195
-
Structural basis for the inhibition of human alkyladenine DNA glycosylase (AAG) by 3,N4-ethenocytosine containing DNA
-
Lingaraju, G. M., Davis, C. A., Setser, J. W., Samson, L. D., and Drennan, C. L. (2011) Structural basis for the inhibition of human alkyladenine DNA glycosylase (AAG) by 3,N4-ethenocytosine containing DNA. J. Biol. Chem. 286, 13205-13213.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 13205-13213
-
-
Lingaraju, G.M.1
Davis, C.A.2
Setser, J.W.3
Samson, L.D.4
Drennan, C.L.5
-
10
-
-
73149092550
-
Kinetic mechanism for the flipping and excision of 1,N6-ethenoadenine by human alkyladenine DNA glycosylase
-
Wolfe, A. E., and O'Brien, P. J. (2009) Kinetic mechanism for the flipping and excision of 1,N6-ethenoadenine by human alkyladenine DNA glycosylase. Biochemistry 48, 11357-11369.
-
(2009)
Biochemistry
, vol.48
, pp. 11357-11369
-
-
Wolfe, A.E.1
O'Brien, P.J.2
-
11
-
-
0142126715
-
Human alkyladenine DNA glycosylase uses acid-base catalysis for selective excision of damaged purines
-
DOI 10.1021/bi035177v
-
O'Brien, P. J., and Ellenberger, T. (2003) Human alkyladenine DNA glycosylase uses acid-base catalysis for selective excision of damaged purines. Biochemistry 42, 12418-12429. (Pubitemid 37296518)
-
(2003)
Biochemistry
, vol.42
, Issue.42
, pp. 12418-12429
-
-
O'Brien, P.J.1
Ellenberger, T.2
-
12
-
-
2342443149
-
4-Ethenocytosine, a Lipid Peroxidation-induced DNA Adduct
-
DOI 10.1074/jbc.M314010200
-
Gros, L., Maksimenko, A., and Privezentzev, C. (2004) Hijacking of the Human Alkyl-N-purine-DNA Glycosylase by 3,N4-Ethenocytosine, a Lipid Peroxidation-induced DNA Adduct. J. Biol. Chem. 279, 17723-17730. (Pubitemid 38560538)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.17
, pp. 17723-17730
-
-
Gros, L.1
Maksimenko, A.V.2
Privezentzev, C.V.3
Laval, J.4
Saparbaev, M.K.5
-
13
-
-
77949543799
-
Frameshift mutagenesis and microsatellite instability induced by human alkyladenine DNA glycosylase
-
Klapacz, J., Lingaraju, G. M., Guo, H. H., Shah, D., Moar-Shoshani, A., Loeb, L. A., and Samson, L. D. (2010) Frameshift mutagenesis and microsatellite instability induced by human alkyladenine DNA glycosylase. Mol. Cell 37, 843-853.
-
(2010)
Mol. Cell
, vol.37
, pp. 843-853
-
-
Klapacz, J.1
Lingaraju, G.M.2
Guo, H.H.3
Shah, D.4
Moar-Shoshani, A.5
Loeb, L.A.6
Samson, L.D.7
-
14
-
-
0032573432
-
Heterogeneous repair of N-methylpurines at the nucleotide level in normal human cells
-
DOI 10.1006/jmbi.1998.2138
-
Ye, N., Holmquist, G. P., and O'Connor, T. R. (1998) Heterogeneous repair of N-methylpurines at the nucleotide level in normal human cells. J. Mol. Biol. 284, 269-285. (Pubitemid 28542453)
-
(1998)
Journal of Molecular Biology
, vol.284
, Issue.2
, pp. 269-285
-
-
Ye, N.1
Holmquist, G.P.2
O'Connor, T.R.3
-
15
-
-
0019887628
-
Diffusion-driven mechanisms of protein translocation on nucleic acids 1. Models and theory
-
Berg, O. G., Winter, R. B., and von Hippel, P. H. (1981) Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory. Biochemistry 20, 6929-6948.
-
(1981)
Biochemistry
, vol.20
, pp. 6929-6948
-
-
Berg, O.G.1
Winter, R.B.2
Von Hippel, P.H.3
-
16
-
-
0018472170
-
The one-dimensional diffusion coefficient of proteins absorbed on DNA. Hydrodynamic considerations
-
Schurr, J. M. (1979) The one-dimensional diffusion coefficient of proteins absorbed on DNA. Hydrodynamic considerations. Biophys. Chem. 9, 413-414.
-
(1979)
Biophys. Chem.
, vol.9
, pp. 413-414
-
-
Schurr, J.M.1
-
17
-
-
71449094444
-
Nonspecifically bound proteins spin while diffusing along DNA
-
Blainey, P. C., Luo, G., Kou, S. C., Mangel, W. F., Verdine, G. L., Bagchi, B., and Xie, X. S. (2009) Nonspecifically bound proteins spin while diffusing along DNA. Nat. Struct. Mol. Biol. 16, 1224-1229.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1224-1229
-
-
Blainey, P.C.1
Luo, G.2
Kou, S.C.3
Mangel, W.F.4
Verdine, G.L.5
Bagchi, B.6
Xie, X.S.7
-
18
-
-
31944435731
-
Long-distance lateral diffusion of human Rad51 on double-stranded DNA
-
DOI 10.1073/pnas.0508366103
-
Granéli, A., Yeykal, C. C., Robertson, R. B., and Greene, E. C. (2006) Long-distance lateral diffusion of human Rad51 on doublestranded DNA. Proc. Natl. Acad. Sci. U.S.A. 103, 1221-1226. (Pubitemid 43191146)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.5
, pp. 1221-1226
-
-
Graneli, A.1
Yeykal, C.C.2
Robertson, R.B.3
Greene, E.C.4
-
19
-
-
33645807371
-
A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA
-
Blainey, P. C., van Oijen, A. M., Banerjee, A., Verdine, G. L., and Xie, X. S. (2006) A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA. Proc. Natl. Acad. Sci. U.S.A. 103, 5752-5757.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 5752-5757
-
-
Blainey, P.C.1
Van Oijen, A.M.2
Banerjee, A.3
Verdine, G.L.4
Xie, X.S.5
-
20
-
-
77951113170
-
Hopping Enables a DNA Repair Glycosylase to Search Both Strands and Bypass a Bound Protein
-
Hedglin, M., and O'Brien, P. J. (2010) Hopping Enables a DNA Repair Glycosylase To Search Both Strands and Bypass a Bound Protein. ACS Chem. Biol. 5, 427-436.
-
(2010)
ACS Chem. Biol.
, vol.5
, pp. 427-436
-
-
Hedglin, M.1
O'Brien, P.J.2
-
21
-
-
55249097156
-
Human Alkyladenine DNA Glycosylase Employs a Processive Search for DNA Damage
-
Hedglin, M., and O'Brien, P. J. (2008) Human Alkyladenine DNA Glycosylase Employs a Processive Search for DNA Damage. Biochemistry 47, 11434-11445.
-
(2008)
Biochemistry
, vol.47
, pp. 11434-11445
-
-
Hedglin, M.1
O'Brien, P.J.2
-
22
-
-
78149245429
-
Structure of Escherichia coli AlkA in complex with undamaged DNA
-
Bowman, B. R., Lee, S., Wang, S., and Verdine, G. L. (2010) Structure of Escherichia coli AlkA in complex with undamaged DNA. J. Biol. Chem. 285, 35783-35791.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 35783-35791
-
-
Bowman, B.R.1
Lee, S.2
Wang, S.3
Verdine, G.L.4
-
23
-
-
0034651873
-
DNA bending and a flip-out mechanism for base excision by the helix-hairpin-helix DNA glycosylase, Escherichia coli AlkA
-
Hollis, T., Ichikawa, Y., and Ellenberger, T. (2000) DNA bending and a flip-out mechanism for base excision by the helixhairpin-helix DNA glycosylase, Escherichia coli AlkA. EMBO J. 19, 758-766. (Pubitemid 30093749)
-
(2000)
EMBO Journal
, vol.19
, Issue.4
, pp. 758-766
-
-
Hollis, T.1
Ichikawa, Y.2
Ellenberger, T.3
-
24
-
-
0034708226
-
Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA
-
DOI 10.1038/35002510
-
Bruner, S. D., Norman, D. P., and Verdine, G. L. (2000) Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA. Nature 403, 859-866. (Pubitemid 30130980)
-
(2000)
Nature
, vol.403
, Issue.6772
, pp. 859-866
-
-
Bruner, S.D.1
Norman, D.P.G.2
Verdine, G.L.3
-
25
-
-
77953654163
-
Detection of damaged DNA bases by DNA glycosylase enzymes
-
Friedman, J. I., and Stivers, J. T. (2010) Detection of Damaged DNA Bases by DNA Glycosylase Enzymes. Biochemistry 49, 4957-4967.
-
(2010)
Biochemistry
, vol.49
, pp. 4957-4967
-
-
Friedman, J.I.1
Stivers, J.T.2
-
26
-
-
0032538337
-
Crystal structure of a human alkylbase-DNA repair enzyme complexed to DNA: Mechanisms for nucleotide flipping and base excision
-
DOI 10.1016/S0092-8674(00)81755-9
-
Lau, A. Y., Scharer, D., Samson, L. D., Verdine, G. L., and Ellenberger, T. (1998) Crystal Structure of a Human Alkylbase-DNA Repair Enzyme Complexed to DNA: Mechanisms for Nucleotide Flipping and Base Excision. Cell 95, 249-258. (Pubitemid 28473785)
-
(1998)
Cell
, vol.95
, Issue.2
, pp. 249-258
-
-
Lau, A.Y.1
Scharer, O.D.2
Samson, L.3
Verdine, G.L.4
Ellenberger, T.5
-
27
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
DOI 10.1016/S0076-6879(97)76066-X
-
Otwinowski, Z., and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326. (Pubitemid 27085611)
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
28
-
-
34447508216
-
Phaser crystallographic software
-
DOI 10.1107/S0021889807021206, PII S0021889807021206
-
McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C., and Read, R. J. (2007) Phaser crystallographic software. J. Appl. Crystallogr. 40, 658-674. (Pubitemid 47080256)
-
(2007)
Journal of Applied Crystallography
, vol.40
, Issue.4
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
29
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. D54, 905-921.
-
(1998)
Acta Crystallogr. D
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
30
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
DOI 10.1107/S0907444996012255
-
Murshudov, G., Vagin, A., and Dodson, E. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D53, 240-255. (Pubitemid 27235885)
-
(1997)
Acta Crystallographica Section D: Biological Crystallography
, vol.53
, Issue.3
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
31
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project, Number 4
-
Collaborative Computational Project, Number 4 (1994) The CCP4 suite: Programs for protein crystallography. Acta Crystallogr. D50, 760-763.
-
(1994)
Acta Crystallogr. D
, vol.50
, pp. 760-763
-
-
-
35
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R., MacArthur, M., and Moss, D. (1993) PROCHECK: A program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26, 283-291.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.1
MacArthur, M.2
Moss, D.3
-
36
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
DOI 10.1073/pnas.181342398
-
Baker, N. A., Sept, D., Joseph, S., Holst, M. J., and McCammon, J. A. (2001) Electrostatics of nanosystems: Application to microtubules and the ribosome. Proc. Natl. Acad. Sci. U.S.A. 98, 10037-10041. (Pubitemid 32802969)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.18
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
37
-
-
46749127004
-
DNA damage induced by chronic inflammation contributes to colon carcinogenesis in mice
-
DOI 10.1172/JC135073
-
Meira, L. B., Bugni, J. M., Green, S. L., Lee, C.-W., Pang, B., Borenshtein, D., Rickman, B. H., Rogers, A. B., Moroski-Erkul, C. A., McFaline, J. L., Schauer, D. B., Dedon, P. C., Fox, J. G., and Samson, L. D. (2008) DNA damage induced by chronic inflammation contributes to colon carcinogenesis in mice. J. Clin. Invest. 118, 2516-2525. (Pubitemid 351949779)
-
(2008)
Journal of Clinical Investigation
, vol.118
, Issue.7
, pp. 2516-2525
-
-
Meira, L.B.1
Bugni, J.M.2
Green, S.L.3
Lee, C.-W.4
Pang, B.5
Borenshtein, D.6
Rickman, B.H.7
Rogers, A.B.8
Moroski-Erkul, C.A.9
McFaline, J.L.10
Schauer, D.B.11
Dedon, P.C.12
Fox, J.G.13
Samson, L.D.14
-
38
-
-
79952812338
-
Substitution of active site tyrosines with tryptophan alters the free energy for nucleotide flipping by human alkyladenine DNA glycosylase
-
Hendershot, J. M., Wolfe, A. E., and O'Brien, P. J. (2011) Substitution of Active Site Tyrosines with Tryptophan Alters the Free Energy for Nucleotide Flipping by Human Alkyladenine DNA Glycosylase. Biochemistry 50, 1864-1874.
-
(2011)
Biochemistry
, vol.50
, pp. 1864-1874
-
-
Hendershot, J.M.1
Wolfe, A.E.2
O'Brien, P.J.3
-
39
-
-
33644511436
-
Structure of a DNA glycosylase searching for lesions
-
Banerjee, A., Santos, W. L., and Verdine, G. L. (2006) Structure of a DNA glycosylase searching for lesions. Science 311, 1153-1157.
-
(2006)
Science
, vol.311
, pp. 1153-1157
-
-
Banerjee, A.1
Santos, W.L.2
Verdine, G.L.3
|