Tunicatimonas pelagia gen. nov., sp. nov., a novel representative of the family flammeovirgaceae isolated from a sea anemone by the differential growth screening method

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 101, Issue 1, 2012, Pages 133-140

  Yoon, Jaewoo ^a   Oku, Naoya ^b,c   Park, Sanghwa ^d   Katsuta, Atsuko ^b,e   Kasai, Hiroaki ^b,e  

^a Keimyung University   (South Korea)

^b MARINE BIOTECHNOLOGY INSTITUTE   (Japan)

^c TOYAMA PREFECTURAL UNIVERSITY   (Japan)

^d UNIVERSITY OF TOKYO   (Japan)

^e KITASATO UNIVERSITY   (Japan)

Author keywords

16S rRNA gene; Concanavalin A; Differential growth screening method; Polyphasic taxonomy; Tunicatimonas pelagia gen. nov., sp. nov.

Indexed keywords

MENAQUINONE;

16S RRNA GENE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; BACTEROIDETES; CHEMOTAXONOMY; CONFERENCE PAPER; DIADUMENE LINEATA; DNA BASE COMPOSITION; FATTY ACID ANALYSIS; FLAMMEOVIRGACEAE; GENE SEQUENCE; MOLECULAR PHYLOGENY; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA GENE; SEA ANEMONE; SEQUENCE HOMOLOGY; TUNICATIMONAS PELAGIA;

AEROBIOSIS; ANEMONE; BACTERIAL TYPING TECHNIQUES; BACTEROIDETES; BASE COMPOSITION; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PIGMENTS, BIOLOGICAL; QUINONES; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

ACTINIARIA; BACTEROIDETES; FLAMMEOVIRGACEAE; HALIPLANELLA LINEATA; NEGIBACTERIA; PELAGIA;

EID: 84856228717     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-011-9626-6     Document Type: Conference Paper

References (43)

1. Atlas RM (1993) In: Parks LC (ed) Handbook of microbiological media. CRC, Boca Raton
2. Bernardet JF, Nakagawa Y, Holmes B (2002) Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52:1049-1070. (Pubitemid 34591240)
3. Blenden DC, Goldberg HS (1965) Silver impregnation stain for Leptospira and flagella. J Bacteriol 89:899-900.
4. Brettar I, Christen R, Höfle MG (2004) Aquiflexum balticum gen. nov., sp. nov., a novel marine bacterium of the Cytophaga-Flavobacterium- Bacteroides group isolated from surface water of the central Baltic Sea. Int J Syst Evol Microbiol 54:2335-2341. (Pubitemid 39585427)
5. Choi JH, Im WT, Liu QM, Yoo JS, Shin JH, Rhee SK, Roh DH (2007) Planococcus donghaensis sp. nov., a starchdegrading bacterium isolated from the East Sea, South Korea. Int J Syst Evol Microbiol 57:2645-2650. (Pubitemid 350187433)
6. Cottrell MT, Kirchman DL (2000) Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization. Appl Environ Microbiol 66:5116-5122. (Pubitemid 32217106)
7. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
8. Fitch WM (1971) Towards defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406-416.
9. Glöckner FO, Fuchs BM, Amann R (1999) Bacterioplankton composition of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl Environ Microbiol 65:3721-3726. (Pubitemid 29399010)
10. Hansen GH, Sørheim R (1991) Improved method for phenotypical characterization of marine bacteria. J Microbiol Methods 13:231-241.
11. Khan ST, Nakagawa Y, Harayama S (2007) Sediminitomix flava gen. nov., sp. nov., of the phylum Bacteroidetes, isolated from marine sediment. Int J Syst Evol Microbiol 57:1689-1693. (Pubitemid 47308394)
12. Kimura M (1983) The neutral theory of molecular evolution. Cambridge University Press, Cambridge
13. Kirchman DL (2002) The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol Ecol 39: 91-100. (Pubitemid 34251208)
14. Lau SCK, Tsoi MMY, Li X, Plakhotnikova I, Dobretsov S, Wu M, Wong PK, Pawlik JR, Qian PY (2006) Description of Fabibacter halotolerans gen. nov., sp. nov. and Roseivirga spongicola sp. nov., and reclassification of [Marinicola] seohaensis as Roseivirga seohaensis comb. nov. Int J Syst Evol Microbiol 56:1059-1065. (Pubitemid 43820833)
15. Lewin RA (1970) Flexithrix dorotheae gen. et sp. nov. (Flexibacterales); and suggestions for reclassifying sheathed bacteria. Can J Microbiol 16:511-515.
16. Marmur J (1961) A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 3:208-218.
17. Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159-167.
18. Muramatsu Y, Takahashi M, Kaneyasu M, Iino T, Suzuki K, Nakagawa Y (2010) Persicobacter psychrovividus sp. nov., isolated from shellfish, and emended descriptions of the genus Persicobacter and Persicobacter diffluens. Int J Syst Evol Microbiol 60:1735-1739.
19. Murray RGE, Doetsch RN, Robinow CF (1994) Determinative and cytological light microscopy. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR (eds) Methods for general and molecular bacteriology. American Society for Microbiology, Washington, DC, pp 21-41.
20. Nakagawa Y, Hamana K, Sakane T, Yamasato K (1997) Reclassification of Cytophaga aprica (Lewin 1969) Reichenbach 1989 in Flammeovirga gen. nov. as Flammeovirga aprica comb. nov. and of Cytophaga diffuens (ex Stanier 1940; emend. Lewin 1969) Reichenbach 1989 in Persicobacter gen. nov. as Persicobacter diffuens comb. nov. Int J Syst Bacteriol 47:220-223. (Pubitemid 27027251)
21. Nedashkovskaya OI, Suzuki M, Vysotskii MV, Mikhailov VV (2003) Reichenbachia agariperforans gen. nov., sp. nov., a novel marine bacterium in the phylum Cytophaga-Flavobacterium- Bacteroides. Int J Syst Evol Microbiol 53:81-85. (Pubitemid 36285224)
22. Nedashkovskaya OI, Kim SB, Lee DH, Lysenko AM, Shevchenko LS, Frolova GM, Mikhailov VV, Lee KH, Bae KS (2005a) Roseivirga ehrenbergii gen. nov., sp. nov., a novel marine bacterium of the phylum 'Bacteroidetes', isolated from the green alga Ulva fenestrata. Int J Syst Evol Microbiol 55:231-234. (Pubitemid 40192476)
23. Nedashkovskaya OI, Kim SB, Lysenko AM, Park MS, Mikhailov VV, Bae KS, Park HY (2005b) Roseivirga echinicomitans sp. nov., a novel marine bacterium isolated from the sea urchin Strongylocentrotus intermedius, and emended description of the genus Roseivirga. Int J Syst Evol Microbiol 55:1797-1800. (Pubitemid 41410388)
24. Nedashkovskaya OI, Kim SB, Suzuki M, Shevchenko LS, Lee MS, Lee KH, Park MS, Frolova GM, Oh HW, Bae KS, Park HY, Mikhailov VV (2005c) Pontibacter actiniarum gen. nov., sp. nov., a novel member of the phylum 'Bacteroidetes', and proposal of Reichenbachiella gen. nov. as a replacement for the illegitimate prokaryotic generic name Reichenbachia Nedashkovskaya et al. 2003. Int J Syst Evol Microbiol 55:2583-2588. (Pubitemid 41655709)
25. Nedashkovskaya OI, Kim SB, Vancanneyt M, Lysenko AM, Shin DS, Park MS, Lee KY, Jung WJ, Kalinovskaya NI, Mikhailov VV, Bae KS, Swings J (2006) Echinicola pacifica gen. nov., sp. nov., a novel flexibacterium isolated from the sea urchin Strongylocentrotus intermedius. Int J Syst Evol Microbiol 56:953-958. (Pubitemid 43820816)
26. Nedashkovskaya OI, Kim SB, Hoste B, Shin DS (2007a) Echinicola vietnamensis sp. nov., a member of the phylum Bacteroidetes isolated from seawater. Int J Syst Evol Microbiol 57:761-763. (Pubitemid 46711955)
27. Nedashkovskaya OI, Kim SB, Shin DS, Beleneva IA, Mikhailov VV (2007b) Fulvivirga kasyanovii gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from seawater in a mussel farm. Int J Syst Evol Microbiol 57:1046-1049. (Pubitemid 46796482)
28. Nedashkovskaya OI, Vancanneyt M, Kim SB, Bae KS (2010) Reclassification of Flexibacter tractuosus (Lewin 1969) Leadbetter 1974 and 'Microscilla sericea' Lewin 1969 in the genus Marivirga gen. nov. as Marivirga tractuosa comb. nov. and Marivirga sericea nom. rev., comb. nov. Int J Syst Evol Microbiol 60:1858-1863.
29. O'Sullivan LA, Weightman AJ, Fry JC (2002) New degenerate Cytophaga-Flexibacter-Bacteroides-specific 16S ribosomal DNA-targeted oligonucleotide probes reveal high bacterial diversity in River Taff epilithon. Appl Environ Microbiol 68:201-210. (Pubitemid 34031181)
30. Perry LB (1973) Gliding motility in some non-spreading flexibacteria. J Appl Microbiol 36:227-232.
31. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
32. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. MIDI Inc, Newark
33. Seo HS, Kwon KK, Yang SH, Lee HS, Bae SS, Lee JH, Kim SJ (2009) Marinoscillum gen. nov., a member of the family 'Flexibacteraceae', with Marinoscillum pacificum sp. nov. from a marine sponge and Marinoscillum furvescens nom. rev., comb. nov. Int J Syst Evol Microbiol 59:1204-1208.
34. Srisukchayakul P, Suwanachart C, Sangnoi Y, Kanjana-Opas A, Hosoya S, Yokota A, Arunpairojana V (2007) Rapidithrix thailandica gen. nov., sp. nov., a marine gliding bacterium isolated from samples collected from the Andaman sea, along the southern coastline of Thailand. Int J Syst Evol Microbiol 57:2275-2279. (Pubitemid 350031701)
35. Takahashi M, Susuki K, Nakagawa Y (2006) Emendation of the genus Flammeovirga and Flammeovirga aprica with the proposal of Flammeovirga arenaria, nom. rev., comb. nov. and Flammeovirga yaeyamensis sp. nov. Int J Syst Evol Microbiol 56:2095-2100. (Pubitemid 44446389)
36. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599. (Pubitemid 47236692)
37. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882. (Pubitemid 28022245)
38. Weisburg WG, Barns SM, Pelletier DA, Lane DJ (1991) 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173:697-703.
39. Xie C, Yokota A (2003) Phylogenetic analysis of Lampropedia hyalina based on the 16S rRNA gene sequence. J Gen Appl Microbiol 49:345-349. (Pubitemid 38208428)
40. Yoon J, Ishikawa S, Kasai H, Yokota A (2007) Perexilibacter aurantiacus gen. nov., sp. nov., a novel member of the family 'Flammeovirgaceae' isolated from sediment. Int J Syst Evol Microbiol 57:964-968. (Pubitemid 46796470)
41. Yoon J, Matsuo Y, Kasai H, Yokota A (2008) Limibacter armeniacum gen. nov., sp. nov., a novel representative of the family 'Flammeovirgaceae' isolated from marine sediment. Int J Syst Evol Microbiol 58:982-986.
42. Yoon J, Adachi K, Park S, Kasai H, Yokota A (2010) Aureibacter tunicatorum gen. nov., sp. nov., a novel marine bacterium isolated from a coral reef sea squirt, and description of Flammeovirgaceae fam. nov. Int J Syst Evol Microbiol. doi:10.1099/ijs.0.027573-0
43. Yoon J, Oku N, Park S, Kasai H, Yokota A (2011) Porifericola rhodea gen. nov., sp. nov., a new member of the phylum Bacteroidetes isolated by the bait-streaked agar technique. Antonie van Leeuwenhoek 100:145-153.