메뉴 건너뛰기




Volumn 53, Issue 1, 2003, Pages 81-85

Reichenbachia agariperforans gen. nov., sp. nov., a novel marine bacterium in the phylum Cytophaga-Flavobacterium-Bacteriodes

Author keywords

[No Author keywords available]

Indexed keywords

DNA 16S; RIBOSOME DNA; SEA WATER;

EID: 0347927395     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02128-0     Document Type: Article
Times cited : (73)

References (28)
  • 1
    • 0030052649 scopus 로고    scopus 로고
    • Cutting a Gordian knot: Emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978)
    • Bernardet, J.-F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K. & Vandamme, P. (1996). Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Bacteriol 46, 128-148.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 128-148
    • Bernardet, J.-F.1    Segers, P.2    Vancanneyt, M.3    Berthe, F.4    Kersters, K.5    Vandamme, P.6
  • 2
    • 0030840748 scopus 로고    scopus 로고
    • Psychroserpens burtonensis gen. nov., sp. nov., and Gelidibacter algens gen. nov., sp. nov., psychrophilic bacteria isolated from Antarctic lacustrine and sea ice habitats
    • Bowman, J. P., McCammon, S. A., Brown, J. L., Nichols, P. D. & McMeekin, T. A. (1997). Psychroserpens burtonensis gen. nov., sp. nov., and Gelidibacter algens gen. nov., sp. nov., psychrophilic bacteria isolated from Antarctic lacustrine and sea ice habitats. Int J Syst Bacteriol 47, 670-677.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 670-677
    • Bowman, J.P.1    McCammon, S.A.2    Brown, J.L.3    Nichols, P.D.4    McMeekin, T.A.5
  • 3
    • 0031777276 scopus 로고    scopus 로고
    • Psychroflexus torquis gen. nov., sp. nov., a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al. 1993) as Psychroflexus gondwanense gen. nov., comb. nov
    • Bowman, J. P., McCammon, S. A., Lewis, T., Skerratt, J. H., Brown, J. L., Nichols, D. S. & McMeekin, T. A. (1998). Psychroflexus torquis gen. nov., sp. nov., a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al. 1993) as Psychroflexus gondwanense gen. nov., comb. nov. Microbiology 144, 1601-1609.
    • (1998) Microbiology , vol.144 , pp. 1601-1609
    • Bowman, J.P.1    McCammon, S.A.2    Lewis, T.3    Skerratt, J.H.4    Brown, J.L.5    Nichols, D.S.6    McMeekin, T.A.7
  • 4
    • 0018828401 scopus 로고
    • A simple test for flexirubin-type pigments
    • Fautz, E. & Reichenbach, H. (1980). A simple test for flexirubin-type pigments. FEMS Microbiol Lett 8, 87-91.
    • (1980) FEMS Microbiol. Lett. , vol.8 , pp. 87-91
    • Fautz, E.1    Reichenbach, H.2
  • 5
    • 0347424822 scopus 로고
    • PHYLIP (phylogeny inference package), version 3.57c. Department of Genetics, University of Washington, Seattle, USA
    • Felsenstein, J. (1995). PHYLIP (phylogeny inference package), version 3.57c. Department of Genetics, University of Washington, Seattle, USA.
    • (1995)
    • Felsenstein, J.1
  • 6
    • 0031894836 scopus 로고    scopus 로고
    • Polaribacter gen. nov., with three new species, P. irgensii sp. nov., P. franzmannii sp. nov. and P. filamentus sp. nov., gas vacuolate polar marine bacteria of the Cytophaga-Flavobacterium-Bacteroides group and reclassification of 'Flectobacillus glomeratus' as Polaribacter glomeratus comb. nov
    • Gosink, J. J., Woese, C. R. & Staley, J. T. (1998). Polaribacter gen. nov., with three new species, P. irgensii sp. nov., P. franzmannii sp. nov. and P. filamentus sp. nov., gas vacuolate polar marine bacteria of the Cytophaga-Flavobacterium-Bacteroides group and reclassification of 'Flectobacillus glomeratus' as Polaribacter glomeratus comb. nov. Int J Syst Bacteriol 48, 223-235.
    • (1998) Int. J. Syst. Bacteriol. , vol.48 , pp. 223-235
    • Gosink, J.J.1    Woese, C.R.2    Staley, J.T.3
  • 7
    • 0028261409 scopus 로고
    • Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective
    • Gutell, R. R., Larsen, N. & Woese, C. R. (1994). Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective. Microbiol Rev 58, 10-26.
    • (1994) Microbiol. Rev. , vol.58 , pp. 10-26
    • Gutell, R.R.1    Larsen, N.2    Woese, C.R.3
  • 8
    • 0026455131 scopus 로고
    • Direct automated sequencing of 16S rDNA amplified by polymerase chain reaction from bacterial cultures without DNA purification
    • Hiraishi, A. (1992). Direct automated sequencing of 16S rDNA amplified by polymerase chain reaction from bacterial cultures without DNA purification. Lett Appl Microbiol 15, 210-213.
    • (1992) Lett. Appl. Microbiol. , vol.15 , pp. 210-213
    • Hiraishi, A.1
  • 9
    • 0035192767 scopus 로고    scopus 로고
    • Arenibacter gen. nov., new genus of the family Flavobacteriaceae and description of a new species, Arenibacter latericius sp. nov
    • 7 other authors
    • Ivanova, E. P., Nedashkovskaya, O. I., Chun, J. & 7 other authors (2001). Arenibacter gen. nov., new genus of the family Flavobacteriaceae and description of a new species, Arenibacter latericius sp. nov. Int J Syst Evol Microbiol 51, 1987-1995.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 1987-1995
    • Ivanova, E.P.1    Nedashkovskaya, O.I.2    Chun, J.3
  • 10
    • 0033030977 scopus 로고    scopus 로고
    • Description of Cellulophaga baltica gen. nov., sp. nov. and Cellulophaga fucicola gen. nov., sp. nov. and reclassification of [Cytophaga] lytica to Cellulophaga lytica gen. nov., comb. nov
    • Johansen, J. E., Nielsen, P. & Sjøholm, C. (1999). Description of Cellulophaga baltica gen. nov., sp. nov. and Cellulophaga fucicola gen. nov., sp. nov. and reclassification of [Cytophaga] lytica to Cellulophaga lytica gen. nov., comb. nov. Int J Syst Bacteriol 49, 1231-1240.
    • (1999) Int. J. Syst. Bacteriol. , vol.49 , pp. 1231-1240
    • Johansen, J.E.1    Nielsen, P.2    Sjøholm, C.3
  • 11
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 12
    • 0014584957 scopus 로고
    • A classification of flexibacteria
    • Lewin, R. A. (1969). A classification of flexibacteria. J Gen Microbiol 58, 189-206.
    • (1969) J. Gen. Microbiol. , vol.58 , pp. 189-206
    • Lewin, R.A.1
  • 13
    • 0014585406 scopus 로고
    • Isolation, cultivation, and characterization of flexibacteria
    • Lewin, R. A. & Lounsbery, D. M. (1969). Isolation, cultivation, and characterization of flexibacteria. J Gen Microbiol 58, 145-170.
    • (1969) J. Gen. Microbiol. , vol.58 , pp. 145-170
    • Lewin, R.A.1    Lounsbery, D.M.2
  • 14
    • 85010439719 scopus 로고
    • A procedure for the isolation of deoxyribonucleic acid from microorganisms
    • Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
    • (1961) J. Mol. Biol. , vol.3 , pp. 208-218
    • Marmur, J.1
  • 15
    • 73649209034 scopus 로고
    • Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature
    • Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
    • (1962) J. Mol. Biol. , vol.5 , pp. 109-118
    • Marmur, J.1    Doty, P.2
  • 16
    • 0034112539 scopus 로고    scopus 로고
    • Taxonomy of Antarctic Flavobacterium species: Description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp. nov. and Flavobacterium xanthum sp. nov., nom. rev., and reclassification of [Flavobacterium] salegens as Salegentibacter salegens gen. nov., comb. nov
    • McCammon, S. A. & Bowman, J. P. (2000). Taxonomy of Antarctic Flavobacterium species: description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp. nov. and Flavobacterium xanthum sp. nov., nom. rev., and reclassification of [Flavobacterium] salegens as Salegentibacter salegens gen. nov., comb. nov. Int J Syst Evol Microbiol 50, 1055-1063.
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 1055-1063
    • McCammon, S.A.1    Bowman, J.P.2
  • 17
    • 0027184337 scopus 로고
    • Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis
    • Nakagawa, Y. & Yamasato, K. (1993). Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis. J Gen Microbiol 139, 1155-1161.
    • (1993) J. Gen. Microbiol. , vol.139 , pp. 1155-1161
    • Nakagawa, Y.1    Yamasato, K.2
  • 18
    • 0031033545 scopus 로고    scopus 로고
    • Reclassification of Cytophaga aprica (Lewin 1969) Reichenbach 1989 in Flammeovirga gen. nov. as Flammeovirga aprica comb. nov. and of Cytophaga diffluens (ex Stanier 1940; emend. Lewin 1969) Reichenbach 1989 in Persicobacter diffluens comb. nov
    • Nakagawa, Y., Hamana, K., Sakane, T. & Yamasato, K. (1997). Reclassification of Cytophaga aprica (Lewin 1969) Reichenbach 1989 in Flammeovirga gen. nov. as Flammeovirga aprica comb. nov. and of Cytophaga diffluens (ex Stanier 1940; emend. Lewin 1969) Reichenbach 1989 in Persicobacter diffluens comb. nov. Int J Syst Bacteriol 47, 220-223.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 220-223
    • Nakagawa, Y.1    Hamana, K.2    Sakane, T.3    Yamasato, K.4
  • 19
    • 0000532955 scopus 로고
    • The Vitreoscillaceae: A family of colourless, gliding, filamentous organisms
    • Pringsheim, E. G. (1951). The Vitreoscillaceae: a family of colourless, gliding, filamentous organisms. J Gen Microbiol 5, 124-149.
    • (1951) J. Gen. Microbiol. , vol.5 , pp. 124-149
    • Pringsheim, E.G.1
  • 20
    • 0025039003 scopus 로고
    • Proposal of Cyclobacterium marinus gen. nov., comb. nov. for a marine bacterium previously assigned to the genus Flectobacillus
    • Raj, H. D. & Maloy, S. R. (1990). Proposal of Cyclobacterium marinus gen. nov., comb. nov. for a marine bacterium previously assigned to the genus Flectobacillus. Int J Syst Bacteriol 40, 337-347.
    • (1990) Int. J. Syst. Bacteriol. , vol.40 , pp. 337-347
    • Raj, H.D.1    Maloy, S.R.2
  • 21
    • 0001702209 scopus 로고
    • AL
    • Edited by J. T. Staley, M. P. Bryant, N. Pfennig & J. G. Holt. Baltimore: Williams & Wilkins
    • AL. In Bergey's Manual of Systematic Bacteriology, vol. 3, pp. 2011-2073. Edited by J. T. Staley, M. P. Bryant, N. Pfennig & J. G. Holt. Baltimore: Williams & Wilkins.
    • (1989) Bergey's Manual of Systematic Bacteriology , vol.3 , pp. 2011-2073
    • Reichenbach, H.1    Order, I.2
  • 22
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 23
    • 0031851584 scopus 로고    scopus 로고
    • Phylogenetic heterogeneity within the genus Herpetosiphon: Transfer of the marine species Herpetosiphon cohaerens, Herpetosiphon nigricans and Herpetosiphon persicus to the genus Lewinella gen. nov. in the Flexibacter-Bacteroides-Cytophaga phylum
    • Sly, L. I., Taghavi, M. & Fegan, M. (1998). Phylogenetic heterogeneity within the genus Herpetosiphon: transfer of the marine species Herpetosiphon cohaerens, Herpetosiphon nigricans and Herpetosiphon persicus to the genus Lewinella gen. nov. in the Flexibacter-Bacteroides-Cytophaga phylum. Int J Syst Bacteriol 48, 731-737.
    • (1998) Int. J. Syst. Bacteriol. , vol.48 , pp. 731-737
    • Sly, L.I.1    Taghavi, M.2    Fegan, M.3
  • 24
    • 0000612080 scopus 로고
    • Phenotypic characterization
    • Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology
    • Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
    • (1994) Methods for General and Molecular Bacteriology , pp. 607-654
    • Smibert, R.M.1    Krieg, N.R.2
  • 25
    • 0032727466 scopus 로고    scopus 로고
    • Phylogenetic analysis of genus Marinilabilia and related bacteria based on the amino acid sequences of GyrB and emended description of Marinilabilia salmonicolor with Marinilabilia agarovorans as its subjective synonym
    • Suzuki, M., Nakagawa, Y., Harayama, S. & Yamamoto, S. (1999). Phylogenetic analysis of genus Marinilabilia and related bacteria based on the amino acid sequences of GyrB and emended description of Marinilabilia salmonicolor with Marinilabilia agarovorans as its subjective synonym. Int J Syst Bacteriol 49, 1551-1557.
    • (1999) Int. J. Syst. Bacteriol. , vol.49 , pp. 1551-1557
    • Suzuki, M.1    Nakagawa, Y.2    Harayama, S.3    Yamamoto, S.4
  • 26
    • 0034802237 scopus 로고    scopus 로고
    • Phylogenetic analysis and taxonomic study of marine Cytophaga-like bacteria: proposal for Tenacibaculum gen. nov. with Tenacibaculum maritimum comb. nov. and Tenacibaculum ovolyticum comb. nov., and description of Tenacibaculum mesophilum sp. nov. and Tenacibaculum amylolyticum sp. nov
    • Suzuki, M., Nakagawa, Y., Harayama, S. & Yamamoto, S. (2001). Phylogenetic analysis and taxonomic study of marine Cytophaga-like bacteria: proposal for Tenacibaculum gen. nov. with Tenacibaculum maritimum comb. nov. and Tenacibaculum ovolyticum comb. nov., and description of Tenacibaculum mesophilum sp. nov. and Tenacibaculum amylolyticum sp. nov. Int J Syst Evol Microbiol 51, 1639-1652.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 1639-1652
    • Suzuki, M.1    Nakagawa, Y.2    Harayama, S.3    Yamamoto, S.4
  • 28
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.