메뉴 건너뛰기




Volumn 57, Issue 5, 2007, Pages 964-968

Perexilibacter aurantiacus gen. nov., sp. nov., a novel member of the 'Flammeovirgaceae' isolated from sediment

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; FATTY ACID; GUANINE; MENAQUINONE; RNA 16S;

EID: 34249076559     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64845-0     Document Type: Article
Times cited : (17)

References (24)
  • 2
    • 0034469143 scopus 로고    scopus 로고
    • Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization
    • Cottrell, M. T. & Kirchman, D. L. (2000). Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization. Appl Environ Microbiol 66, 5116-5122.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5116-5122
    • Cottrell, M.T.1    Kirchman, D.L.2
  • 3
    • 0027801562 scopus 로고
    • Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages
    • DeLong, E. F., Franks, D. G. & Alldredge, A. L. (1993). Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages. Limnol Oceanogr 38, 924-934.
    • (1993) Limnol Oceanogr , vol.38 , pp. 924-934
    • DeLong, E.F.1    Franks, D.G.2    Alldredge, A.L.3
  • 4
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39, 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 5
    • 17644439150 scopus 로고    scopus 로고
    • Bacterioplankton composition of lakes and oceans: A first comparison based on fluorescence in situ hybridization
    • Glöckner, F. O., Fuchs, B. M. & Amann, P. (1999). Bacterioplankton composition of lakes and oceans: A first comparison based on fluorescence in situ hybridization. Appl Environ Microbiol 65, 3721-3726.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3721-3726
    • Glöckner, F.O.1    Fuchs, B.M.2    Amann, P.3
  • 6
    • 0024451276 scopus 로고
    • Thermonema lapsum gen. nov., sp. nov., a thermophilic gliding bacteria
    • Hudson, J. A., Schofield, K. M., Morgan, H. W. & Daniel, R. M. (1989). Thermonema lapsum gen. nov., sp. nov., a thermophilic gliding bacteria. Int J Syst Bacteriol 39, 485-487.
    • (1989) Int J Syst Bacteriol , vol.39 , pp. 485-487
    • Hudson, J.A.1    Schofield, K.M.2    Morgan, H.W.3    Daniel, R.M.4
  • 7
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 8
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • b 150-163
    • Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, b 150-163.
    • (2004) Brief Bioinform , vol.5
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 9
    • 0014793620 scopus 로고
    • Flexithrix dorotheae gen. et sp. nov. (Flexibacterales); and suggestions for reclassifying sheathed bacteria
    • Lewin, R. A. (1970). Flexithrix dorotheae gen. et sp. nov. (Flexibacterales); and suggestions for reclassifying sheathed bacteria. Can J Microbiol 16, 511-515.
    • (1970) Can J Microbiol , vol.16 , pp. 511-515
    • Lewin, R.A.1
  • 10
    • 0002803581 scopus 로고    scopus 로고
    • Overview: A phylogenetic backbone and taxonomic framework for prokaryotic systematics
    • 2nd edn, Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer
    • Ludwig, W. & Klenk, H.-P. (2001). Overview: A phylogenetic backbone and taxonomic framework for prokaryotic systematics. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. I, pp. 49-65. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
    • (2001) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 49-65
    • Ludwig, W.1    Klenk, H.-P.2
  • 11
    • 0000144963 scopus 로고
    • Composition of sea water
    • Lyman, J. & Fleming, R. H. (1940). Composition of sea water. J Mar Res 3, 134-146.
    • (1940) J Mar Res , vol.3 , pp. 134-146
    • Lyman, J.1    Fleming, R.H.2
  • 12
    • 85010439719 scopus 로고
    • A procedure for the isolation of deoxyribonucleic acid from microorganisms
    • Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
    • (1961) J Mol Biol , vol.3 , pp. 208-218
    • Marmur, J.1
  • 13
    • 0000198211 scopus 로고
    • Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography
    • Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
    • (1989) Int J Syst Bacteriol , vol.39 , pp. 159-167
    • Mesbah, M.1    Premachandran, U.2    Whitman, W.B.3
  • 14
    • 0002435103 scopus 로고
    • Determinative and cytological light microscopy
    • Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology
    • Murray, R. G. E., Doetsch, R. N. & Robinow, C. F. (1994). Determinative and cytological light microscopy. In Methods for General and Molecular Bacteriology, pp. 21-41. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
    • (1994) Methods for General and Molecular Bacteriology , pp. 21-41
    • Murray, R.G.E.1    Doetsch, R.N.2    Robinow, C.F.3
  • 15
    • 0031033545 scopus 로고    scopus 로고
    • Reclassification of Cytophaga aprica (Lewin 1969) Reichenbach 1989 in Flammeovirga gen. nov. as Flammeovirga aprica comb. nov. and of Cytophaga diffuens (ex Stanier 1940; emend. Lewin 1969) Reichenbach 1989 in Persicobacter gen. nov. as Persicobacter diffuens comb. nov
    • Nakagawa, Y., Hamana, K., Sakane, T. & Yamasato, K. (1997). Reclassification of Cytophaga aprica (Lewin 1969) Reichenbach 1989 in Flammeovirga gen. nov. as Flammeovirga aprica comb. nov. and of Cytophaga diffuens (ex Stanier 1940; emend. Lewin 1969) Reichenbach 1989 in Persicobacter gen. nov. as Persicobacter diffuens comb. nov. Int J Syst Bacteriol 47, 220-223.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 220-223
    • Nakagawa, Y.1    Hamana, K.2    Sakane, T.3    Yamasato, K.4
  • 17
    • 0036135163 scopus 로고    scopus 로고
    • New degenerate Cytophaga-Flexibacter-Bacteroides-specific 16S ribosomal DNA-targeted oligonucleotide probes reveal high bacterial diversity in River Taff epilithon
    • O'Sullivan, L. A., Weightman, A, J. & Fry, J. C. (2002). New degenerate Cytophaga-Flexibacter-Bacteroides-specific 16S ribosomal DNA-targeted oligonucleotide probes reveal high bacterial diversity in River Taff epilithon. Appl Environ Microbiol 68, 201-210.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 201-210
    • O'Sullivan, L.A.1    Weightman, A.J.2    Fry, J.C.3
  • 18
    • 1542301476 scopus 로고    scopus 로고
    • Distribution and culturability of the uncultivated 'AGG58 cluster' of the Bacteroidetes phylum in aquatic environments
    • O'Sullivan, L. A., Fuller, K. E, Thomas, E. M., Turley, C. M., Fry, J. C. & Weightman, A. J. (2004). Distribution and culturability of the uncultivated 'AGG58 cluster' of the Bacteroidetes phylum in aquatic environments. FEMS Microbiol Ecol 47, 359-370.
    • (2004) FEMS Microbiol Ecol , vol.47 , pp. 359-370
    • O'Sullivan, L.A.1    Fuller, K.E.2    Thomas, E.M.3    Turley, C.M.4    Fry, J.C.5    Weightman, A.J.6
  • 19
    • 0015909084 scopus 로고
    • Gliding motility in some non-spreading flexibacteria
    • Perry, L. B. (1973). Gliding motility in some non-spreading flexibacteria. J Appl Bacteriol 36, 227-232.
    • (1973) J Appl Bacteriol , vol.36 , pp. 227-232
    • Perry, L.B.1
  • 20
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saltou, N. & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saltou, N.1    Nei, M.2
  • 21
    • 33748999282 scopus 로고    scopus 로고
    • Emendation of the genus Flammeovirga and Flammeovirga aprica with the proposal of Flammeovirga arenaria nom. rev., comb. nov. and Flammeovirga yaeyamensis sp. nov
    • Takahashi, M., Suzuki, K. & Nakagawa, Y. (2006). Emendation of the genus Flammeovirga and Flammeovirga aprica with the proposal of Flammeovirga arenaria nom. rev., comb. nov. and Flammeovirga yaeyamensis sp. nov. Int J Syst Evol Microbiol 56, 2095-2100.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 2095-2100
    • Takahashi, M.1    Suzuki, K.2    Nakagawa, Y.3
  • 22
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 23
    • 0026067797 scopus 로고
    • 16S ribosomal DNA amplification for phylogenetic study
    • Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J. (1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.
    • (1991) J Bacteriol , vol.173 , pp. 697-703
    • Weisburg, W.G.1    Barns, S.M.2    Pelletier, D.A.3    Lane, D.J.4
  • 24
    • 1042309477 scopus 로고    scopus 로고
    • Phylogenetic analysis of Lampropedia hyalina based on the 16S rRNA gene sequence
    • Xie, C. & Yokota, A. (2003). Phylogenetic analysis of Lampropedia hyalina based on the 16S rRNA gene sequence. J Gen Appl Microbiol 49, 345-349.
    • (2003) J Gen Appl Microbiol , vol.49 , pp. 345-349
    • Xie, C.1    Yokota, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.