Rapidithrix thailandica gen. nov., sp nov., a marine gliding bacterium isolated from samples collected from the Andaman sea, along the southern coastline of Thailand

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 10, 2007, Pages 2275-2279

  Srisukchayakul, Pornpoj ^a   Suwanachart, Chatrudee ^a   Sangnoi, Yutthapong ^b   Kanjana Opas, Akkharawit ^b   Hosoya, Shoichi ^c   Yokota, Akira ^c   Arunpairojana, Vullapa ^a  

^a THAILAND INSTITUTE OF SCIENTIFIC AND TECHNOLOGICAL RESEARCH   (Thailand)

^b PRINCE OF SONGKLA UNIVERSITY   (Thailand)

^c UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DECANOIC ACID; FATTY ACID; GUANINE; PALMITIC ACID; QUINONE DERIVATIVE; RNA 16S;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; BACTEROIDETES; CHEMOTAXONOMY; CONTROLLED STUDY; DNA CONTENT; FAMILIA; FATTY ACID ANALYSIS; GENOTYPE; GENUS; GRAM NEGATIVE BACTERIUM; MARINE BACTERIUM; NEW GENUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PHYLUM; PRIORITY JOURNAL; RAPIDITHRIX THAILANDICA; RNA SEQUENCE; SEA; SEASHORE; TAXONOMY; THAILAND; TYPE STRAIN;

BACTERIAL TYPING TECHNIQUES; BACTEROIDETES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; MOLECULAR SEQUENCE DATA; PHYLOGENY; QUINONES; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; THAILAND;

BACTERIA (MICROORGANISMS); BACTEROIDETES; FLAMMEOVIRGACEAE; FLEXITHRIX;

EID: 35648963626     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65087-0     Document Type: Article

References (25)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Barrow, G. I. & Feltham, R. K A. (1993). Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edn. Cambridge: Cambridge University Press.
3. Bernardet J.-F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K. & Vandamme, P. (1996). Cutting a Gordian knot: Emended classification and description of the genusFlavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Bacteriol 46, 128-148.
4. Ezaki, T., Hashimoto, Y. & Yabuuchi, E (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro-dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
5. Hall, T. (2004). BioEdit. Biological sequence alignment editor for win95/98/NT/2K/XP. http://www.mbio.ncsu.edu/BioEdit/bioedit.html
6. Hosoya, S. & Yokota, A. (2007). Flammeovirga kamogawensis sp. nov., isolated from coastal seawater in Japan. Int J Syst Evol Microbiol 57, 1327-1330.
7. Hosoya, S., Arunpairojana, V., Suwannachart, C., Kanjana-Opas, A. & Yokota, A. (2006). Aureispira marina gen. nov., sp. nov., a gliding, arachidonic acid-containing bacterium isolated from the southern coastline of Thailand. Int J Syst Evol Microbiol 56, 2931-2935.
8. Hudson, J. A., Schofield, K. M., Morgan, H. W. & Daniel, R. M. (1989). Thermonema lapsum gen. nov., sp. nov., a thermophilic gliding bacterium. Int J Syst Bacteriol 39, 485-487.
9. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
10. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
11. Lewin, R. A. (1970). Flexithrix dorotheae gen. et sp. nov. (Flexibacterales); and suggestions for reclassifying sheathed bacteria. Can J Microbiol 16, 511-515.
12. Ludwig, W. & Klenk, H.-P. (2001). Overview: A phylogenetic backbone and taxonamic framework for prokaryotic systematics. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 49-65. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
13. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribornucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
14. Naganuma, T. & Horikoshi, K. (1994). Cellular fatty acids of marine agarolytic gliding bacteria. Syst Appl Microbiol 17, 125-127.
15. Nakagawa, Y., Hamana, K, Sakane, T. & Yamasato, K. (1997). Reclassification of Cytophaga aprica (Lewin 1969) Reichenbach 1989 in Flammeovirga gen. nov. as Flammeovirga aprica comb. nov. and of Cytophaga diffluens (ex Stanier 1940; emend. Lewin 1969) Reichenbach 1989 in Persicobacter gen. nov. as Persicobacter diffluens comb. nov. Int J Syst Bacteriol 47, 220-223.
16. Nakagawa, Y., Sakane, T., Suzuki, M. & Hatano, K. (2002). Phylogenetic structure of the genera Flexibacter, Flexithrix and Microscilla deduced from 16S rRNA sequence analysis. J Gen Appl Microbiol 48, 155-165.
17. Pinhassi, J., Zweifel, U. L. & Hagström, A. (1997). Dominant marine bacterioplankton species found among colony-forming bacteria. Appl Environ Microbiol 63, 3359-3366.
18. Saitou, N. & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
19. Saitou, H. & Miura, K. I. (1963). Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72, 619-629.
20. Shah, H. N. & Collins, M. D. (1988). Proposal for reclassification of Bacteroides asaccharolyticus, Bacteroides gingivalis, and Bacteroides endodontalis in new genus, Porphyromonas. Int J Syst Bacteriol 38, 128-131.
21. Sly, L. I. & Arunpairojana, V. (1987). Isolation of manganese-oxidizing Pedomicrobium cultures from water by micromanipulation. J Microbiol Methods 6, 177-182.
22. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Manual of Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt. Washington, DC: American Society for Microbiology.
23. Suzuki, M., Nakagawa, Y., Harayama, S. & Yamamoto, S. (2001). Phylogenetic analysis and taxonomic study of marine Cytophaga-like bacteria: Proposal for Tenacibaculum gen. nov. with Tenacibaculum maritimum comb. nov. with Tenacibaculum ovolyticum comb. nov. and description of Tenacibaculum mesophilum sp. nov. and Tenacibaculum amylolyticum sp. nov. Int J Syst Evol Microbiol 51, 1639-1652.
24. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
25. Uchino, Y, Hirata, A., Yokota, A. & Suglyama, J. (1998). Reclassification of marine Agrobacterium species: Proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb. nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev. J Gen Appl Microbiol 44, 201-210.