Reclassification of Flexibacter tractuosus (Lewin 1969) Leadbetter 1974 and 'Microscilla sericea' Lewin 1969 in the genus Marivirga gen. nov. as Marivirga tractuosa comb. nov. and Marivirga sericea nom. rev., comb. nov.

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 8, 2010, Pages 1858-1863

  Nedashkovskaya, Olga I ^a   Vancanneyt, Marc ^b   Kim, Seung Bum ^c   Bae, Kyung Sook ^d  

^a PACIFIC INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^b GHENT UNIVERSITY   (Belgium)

^c Chungnam National University   (South Korea)

^d Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; FATTY ACID; RNA 16S;

ARTICLE; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; LIPID COMPOSITION; MARIVIRGA SERICEA; MARIVIRGA TRACTUOSA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRIORITY JOURNAL; SPECIES DIFFERENTIATION;

BACTEROIDETES; DNA, BACTERIAL; DNA, RIBOSOMAL; FLEXIBACTER; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S;

FLAMMEOVIRGACEAE; FLEXIBACTER TRACTUOSUS; MICROSCILLA SERICEA;

EID: 77955638725     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.016121-0     Document Type: Article

References (36)

1. Bowman, J. P. (2000). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50, 1861-1868.
2. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
3. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
4. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
5. Hosoya, S. & Yokota, A. (2007). Reclassification of Flexibacter aggregans (Lewin 1969) Leadbetter 1974 as a later heterotypic synonym of Flexithrix dorotheae Lewin 1970. Int J Syst Evol Microbiol 57, 1086-1088.
6. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
7. Khan, S. T., Nakagawa, Y. & Harayama, S. (2007). Sediminitomix flava gen. nov., sp. nov., of the phylum Bacteroidetes, isolated from marine sediment. Int J Syst Evol Microbiol 57, 1689-1693. (Pubitemid 47308394)
8. Kluge, A. G. & Farris, J. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
9. Lau, S. C. K., Tsoi, M. M. Y., Li, X., Plakhotnikova, I., Dobretsov, S., Wu, M., Wong, P.-K., Pawlik, J. R. & Qian, P.-Y. (2006). Description of Fabibacter halotolerans gen. nov., sp. nov. and Roseivirga spongicola sp. nov., and reclassification of [Marinicola] seohaensis as Roseivirga seohaensis comb. nov. Int J Syst Evol Microbiol 56, 1059-1065. (Pubitemid 43820833)
10. Leadbetter, E. R. (1974). Genus II Flexibacter Soriano 1945, Lewin 1969, 192 emend. mut. char. In Bergey's Manual of Determinative Bacteriology, 8th edn, pp. 105-107. Edited by R. E. Buchanan & N. E. Gibbons. Baltimore: Williams & Wilkins.
11. Lemos, M. L., Toranzo, A. E. & Barja, J. L. (1985). Modified medium for oxidation-fermentation test in the identification of marine bacteria. Appl Environ Microbiol 49, 1541-1543.
12. Lewin, R. A. (1969). A classification of flexibacteria. J Gen Microbiol 58, 189-206.
13. Ludwig, W., Euzéby, J. & Whitman, W. B. (2008). Draft Taxonomic Outline of the Bacteroidetes, Planctomycetes, Chlamydiae, Spiroehaetes, Fibrobacteres, Fusobacteria, Acidobacteria, Verrucomicrobia, Dictyoglomi, and Gemmatimonadetes for Volume 4 of the second edition of Bergey's Manual of Systematic Bacteriology (http://www.bergeys.org/outlines.html).
14. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
15. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
16. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241. (Pubitemid 14058168)
17. Muramatsu, Y., Takahashi, M., Kaneyasu, M., Iino, T., Suzuki, K. & Nakagawa, Y. (2010). Persicobacter psychrovividus sp. nov., isolated from shellfish, and emended descriptions of the genus Persicobacter and Persicobacter diffluens. Int J Syst Evol Microbiol 60, 1735-1739.
18. Nakagawa, Y., Hamana, K., Sakane, T. & Yamasato, K. (1997). Reclassification of Cytophaga aprica (Lewin 1969) Reichenbach 1989 in Flammeovirga gen. nov. as Flammeovirga aprica comb. nov. and of Cytophaga diffluens (ex Stanier 1940; emend. Lewin 1969) Reichenbach 1989 in Persicobacter gen. nov as Persicobacter diffluens comb. nov. Int J Syst Bacteriol 47, 220-223.
19. Nakagawa, Y., Sakane, T., Suzuki, M. & Hatano, K. (2002). Phylogenetic structure of the genera Flexibacter, Flexithrix, and Microscilla deduced from 16S rRNA sequence analysis. J Gen Appl Microbiol 48, 155-165. (Pubitemid 34947167)
20. Nedashkovskaya, O. I., Suzuki, M., Vysotskii, M. V. & Mikhailov, V. V. (2003). Reichenbachia agariperforans gen. nov., sp. nov., a novel marine bacterium in the phylum Cytophaga-Flavobacterium-Bacteroides. Int J Syst Evol Microbiol 53, 81-85.
21. Nedashkovskaya, O. I., Kim, S. B., Han, S. K., Rhee, M. S., Lysenko, A. M., Falsen, E., Frolova, G. M., Mikhailov, V. V. & Bae, K. S. (2004). Ulvibacter litoralis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the green alga Ulva fenestrata. Int J Syst Evol Microbiol 54, 119-123.
22. Nedashkovskaya, O. I., Kim, S. B., Lee, D. H., Lysenko, A. M., Shevchenko, L. S., Frolova, G. M., Mikhailov, V. V., Lee, K. H. & Bae, K. S. (2005a). Roseivirga ehrenbergii gen. nov., sp. nov., a novel marine bacterium of the phylum 'Bacteroidetes', isolated from the green alga Ulva fenestrata. Int J Syst Evol Microbiol 55, 231-234.
23. Nedashkovskaya, O. I., Kim, S. B., Lysenko, A. M., Park, M. S., Mikhailov, V. V., Bae, K. S. & Park, H. Y. (2005b). Roseivirga echinicomitans sp. nov., a novel marine bacterium isolated from the sea urchin Strongylocentrotus intermedius, and emended description of the genus Roseivirga. Int J Syst Evol Microbiol 55, 1797-1800.
24. Nedashkovskaya, O. I., Kim, S. B., Suzuki, M., Shevchenko, L. S., Lee, M. S., Lee, K. H., Park, M. S., Frolova, G. M., Oh, H. W., Bae, K. S., Park, H. Y. & Mikhailov, V. V. (2005c). Pontibacter actiniarum gen. nov., sp. nov., a novel member of the phylum 'Bacteroidetes', and proposal of Reichenbachiella gen. nov. as a replacement for the illegitimate prokaryotic generic name Reichenbachia Nedashkovskaya et al. 2003. Int J Syst Evol Microbiol 55, 2583-2588.
25. Nedashkovskaya, O. I., Kim, S. B., Shin, D. S., Beleneva, I. A. & Mikhailov, V. V. (2007). Fulvivirga kasyanovii gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from seawater in a mussel farm. Int J Syst Evol Microbiol 57, 1046-1049.
26. Nedashkovskaya, O. I., Kim, S. B., Lysenko, A. M., Kalinovskaya, N. I. & Mikhailov, V. V. (2008). Reclassification of Roseivirga seohaensis (Yoon et al. 2005) Lau et al. 2006 as a later synonym of Roseivirga ehrenbergii Nedashkovskaya et al. 2005 and emendation of the species description. Int J Syst Evol Microbiol 58, 1194-1197.
27. AL emend. In Bergey's Manual of Systematic Bacteriology, vol. 3, pp. 2061-2071. Edited by J. T. Staley, M. P. Bryant, N. Pfennig & J. G. Holt. Baltimore: Williams & Wilkins.
28. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
29. Seo, H.-S., Kwon, K. K., Yang, S.-H., Lee, H.-S., Bae, S. S., Lee, J.-H. & Kim, S.-J. (2009). Marinoscillum gen. nov., a member of the family 'Flexibacteraceae', with Marinoscillum pacificum sp. nov. from a marine sponge and Marinoscillum furvescens nom. rev., comb. nov. Int J Syst Evol Microbiol 59, 1204-1208.
30. Skerman, V. B. D., McGowan, V. & Sneath, P. H. A. (editors) (1980). Approved lists of bacterial names. Int J Syst Bacteriol 30, 225-420.
31. Srisukchayakul, P., Suwanachart, C., Sangnoi, Y., Kanjana-Opas, A., Hosoya, S., Yokota, A. & Arunpairojana, V. (2007). Rapidithrix thailandica gen. nov., sp. nov., a marine gliding bacterium isolated from samples collected from the Andaman sea, along the southern coastline of Thailand. Int J Syst Evol Microbiol 57, 2275-2279.
32. Suzuki, M., Nakagawa, Y., Harayama, S. & Yamamoto, S. (2001). Phylogenetic analysis and taxonomic study of marine Cytophaga-like bacteria: proposal for Tenacibaculum gen. nov. with Tenacibaculum maritimum comb. nov., and Tenacibaculum ovolyticum comb. nov., and description of Tenacibaculum mesophilum sp. nov. and Tenacibaculum amylolyticum sp. nov. Int J Syst Evol Microbiol 51, 1639-1652.
33. Takahashi, M., Suzuki, K. & Nakagawa, Y. (2006). Emendation of the genus Flammeovirga and Flammeovirga aprica with the proposal of Flammeovirga arenaria nom. rev., comb. nov. and Flammeovirga yaeyamensis sp. nov. Int J Syst Evol Microbiol 56, 2095-2100.
34. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
35. Yoon, J., Ishikawa, S., Kasai, H. & Yokota, A. (2007). Perexilibacter aurantiacus gen. nov., sp. nov., a novel member of the family 'Flammeovirgaceae' isolated from sediment. Int J Syst Evol Microbiol 57, 964-968.
36. Yoon, J., Matsuo, Y., Kasai, H. & Yokota, A. (2008). Limibacter armeniacum gen. nov., sp. nov., a novel representative of the family 'Flammeovirgaceae' isolated from marine sediment. Int J Syst Evol Microbiol 58, 982-986.