Pontibacter actiniarum gen. nov., sp. nov., a novel member of the phylum 'Bacteroidetes', and proposal of Reichenbachiella gen. nov. as a replacement for the illegitimate prokaryotic generic name Reichenbachia Nedashkovskaya et al. 2003

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 6, 2005, Pages 2583-2588

  Nedashkovskaya, Olga I ^a   Kim, Seung Bum ^b   Suzuki, Makoto ^c   Shevchenko, Lyudmila S ^a   Lee, Myung Sook ^d   Lee, Kang Hyun ^e   Park, Myung Soo ^e   Frolova, Galina M ^a   Oh, Hyun Woo ^e   Bae, Kyung Sook ^e   Park, Ho Yong ^e   Mikhailov, Valery V ^a  

^a PACIFIC INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^b Chungnam National University   (South Korea)

^c KYOWA HAKKO KOGYO CO LTD   (Japan)

^d Suwon Women's College   (South Korea)

^e Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; FATTY ACID DERIVATIVE; GUANINE; RNA 16S;

AEROBIC BACTERIUM; ARTICLE; BACTERIAL STRAIN; BACTERIOPLANKTON; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; BACTEROIDETES; CELL COMPOSITION; CHEMOTAXONOMY; CONTROLLED STUDY; DNA CONTENT; GENE SEQUENCE; GENETIC LINE; GENOTYPE; GRAM NEGATIVE BACTERIUM; HETEROTROPHY; NEW GENUS; NEW SPECIES; NOMENCLATURE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PHYLUM; PIGMENTATION; PONTIBACTER ACTINIARUM; PRIORITY JOURNAL; PROKARYOTE; SEQUENCE ANALYSIS;

BACTEROIDETES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; RNA, RIBOSOMAL, 16S;

BACTERIA (MICROORGANISMS); BACTEROIDETES; NEGIBACTERIA; PROKARYOTA; REICHENBACHIA; REICHENBACHIA AGARIPERFORANS;

EID: 27844445282     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63819-0     Document Type: Article

References (30)

1. Akagawa-Matsushita, M., Itoh, T., Katayama, Y., Kuraishi, H. & Yamasato, K. (1992). Isoprenoid quinone composition of some marine Alteromonas, Marinomonas, Deleya, Pseudomonas and Shewanella species. J Gen Microbiol 138, 2275-2281.
2. Bowman, J. P. (2000). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50, 1861-1868.
3. Bowman, J. P., Nichols, C. M. & Gibson, J. A. E. (2003). Algoriphagus ratkowskyi gen. nov., sp. nov., Brumimicrobium glaciale gen. nov., sp. nov., Cryomorpha ignava gen. nov., sp. nov. and Crocinitomix catalasitica gen. nov., sp. nov., novel flavobacteria isolated from various polar habitats. Int J Syst Evol Microbiol 53, 1343-1355.
4. Brettar, I., Christen, R. & Höfle, M. G. (2004a). Belliella baltica gen. nov., sp. nov., a novel marine bacterium of the Cytophaga-Flavobacterium-Bacteroides group isolated from surface water of the central Baltic Sea. Int J Syst Evol Microbiol 54, 65-70.
5. Brettar, I., Christen, R. & Höfle, M. G. (2004b). Aquiflexum balticum gen. nov., sp. nov., a novel marine bacterium of the Cytophaga-Flavobacterium-Bacteroides group isolated from surface water of the central Baltic Sea. Int J Syst Evol Microbiol 54, 2335-2341.
6. Buczolits, S., Denner, E. B. M., Vybiral, D., Wieser, M., Kämpfer, P. & Busse, H. J. (2002). Classification of three airborne bacteria and proposal of Hymenobacter aerophilus sp. nov. Int J Syst Evol Microbiol 52, 445-456.
7. Collins, M. D., Hutson, R. A., Grant, I. R. & Patterson, M. F. (2000). Phylogenetic characterization of a novel radiation-resistant bacterium from irradiated pork: description of Hymenobacter actinosclerus sp. nov. Int J Syst Evol Microbiol 50, 731-734.
8. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
9. Fitch, W. M. & Margoliash, E. (1967). Construction of phylogenetic trees. Science 155, 279-284.
10. Hirsch, P., Ludwig, W., Hethke, C., Sittig, M., Hoffmann, B. & Gallikowski, C. A. (1998). Hymenobacter roseosalivarius gen. nov., sp. nov. from continental Antarctica soils and sandstone: bacteria of the Cytophaga/Flavobacterium/Bacteroides line of phylogenetic descent. Syst Appl Microbiol 21, 374-383.
11. Kim, S. B., Falconer, C., Williams, E. & Goodfellow, M. (1998). Streptomyces thermocarboxydovorans sp. nov. and Streptomyces thermocarboxydus sp. nov., two moderately thermophilic carboxydotrophic species isolated from soil. Int J Syst Bacteriol 48, 59-68.
12. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
13. AL. In Bergey's Manual of Systematic Bacteriology, vol. 1, pp. 129-132. Edited by N. R. Krieg & J. C. Holt. Baltimore: Williams & Wilkins.
14. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
15. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
16. Nedashkovskaya, O. I., Suzuki, M., Vysotskii, M. V. & Mikhailov, V. V. (2003). Reichenbachia agariperforans gen. nov., sp. nov., a novel marine bacterium in the phylum Cytophaga-Flavobacterium-Bacteroides. Int J Syst Evol Microbiol 53, 81-85.
17. Nedashkovskaya, O. I., Vancanneyt, M., Van Trappen, S. & 7 other authors (2004). Description of Algoriphagus aquimarinus sp. nov., Algoriphagus chordae sp. nov. and Algoriphagus winogradskyi sp. nov., from sea water and algae, transfer of Hongiella halophila Yi and Chun 2004 to the genus Algoriphagus as Algoriphagus halophilus comb. nov. and emended descriptions of the genera Algoriphagus Bowman et al. 2003 and Hongiella Yi and Chun 2004. Int J Syst Evol Microbiol 54, 1757-1764.
18. Nedashkovskaya, O. I., Kim, S. B., Lee, D. H., Lysenko, A. M., Shevchenko, L. S., Frolova, G. M., Mikhailov, V. V., Lee, K. H. & Bae, K. S. (2005a). Roseivirga ehrenbergii gen. nov., sp. nov., a novel marine bacterium of the phylum 'Bacteroidetes', isolated from the green alga Ulva fenestrata. Int J Syst Evol Microbiol 55, 231-234.
19. Nedashkovskaya, O. I., Kim, S. B., Lysenko, A. M., Park, M. S., Mikhailov, V. V., Bae, K. S. & Park, H. Y. (2005b). Roseivirga echinicomitans sp. nov., a novel marine bacterium isolated from the sea urchin Strongylocentrotus intermedius, and emended description of the genus Roseivirga. Int J Syst Evol Microbiol 55, 1797-1800.
20. Nedashkovskaya, O. I., Kim, S. B., Lee, M. S., Park, M. S., Lee, K. H., Lysenko, A. M., Oh, H. W., Mikhailov, V. V. & Bae, K. S. (2005c). Cyclobacterium amurskyense sp. nov., a novel marine bacterium isolated from sea water. Int J Syst Evol Microbiol 55, 2391-2394.
21. Raj, H. D. & Maloy, S. R. (1990). Proposal of Cyclobacterium marinus gen. nov., comb. nov. for a marine bacterium previously assigned to the genus Flectobacillus. Int J Syst Bacteriol 40, 337-347.
22. AL. In Bergey's Manual of Systematic Bacteriology, vol. 3, pp. 2011-2073. Edited by J. T. Staley, M. P. Bryant, N. Pfennig & J. G. Holt. Baltimore: Williams & Wilkins.
23. Rickard, A. H., Stead, A. T., O'May, G. A., Lindsay, S., Banner, M., Handley, P. S. & Gilbert, P. (2005). Adhaeribacter aquaticus gen. nov., sp. nov., a Gram-negative isolate from a potable water biofilm. Int J Syst Evol Microbiol 55, 821-829.
24. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
25. Van Trappen, S., Vandecandelaere, I., Mergaert, J. & Swings, J. (2004). Algoriphagus antarcticus sp. nov., a novel psychrophile from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol 54, 1969-1973.
26. Yi, H. & Chun, J. (2004). Hongiella mannitolivorans gen. nov., sp. nov., Hongiella halophila sp. nov. and Hongiella ornithinivorans sp. nov., isolated from tidal flat sediment. Int J Syst Evol Microbiol 54, 157-162.
27. Yoon, J.-H., Yeo, S.-H. & Oh, T.-K. (2004). Hongiella marincola sp. nov., isolated from sea water of the East Sea in Korea. Int J Syst Evol Microbiol 54, 1845-1848.
28. Yoon, J.-H., Kang, S.-J., Lee, C.-H. & Oh, T.-K. (2005a). Marinicola seohaensis gen. nov., sp. nov., isolated from sea water of the Yellow Sea, Korea. Int J Syst Evol Microbiol 55, 859-863.
29. Yoon, J.-H., Kang, S.-J., Jung, S.-Y., Lee, C.-H. & Oh, T.-K. (2005b). Algoriphagus yeomjeoni sp. nov., isolated from a marine solar saltern in the Yellow Sea, Korea. Int J Syst Evol Microbiol 55, 865-870.
30. Yoon, J.-H., Kang, S.-J. & Oh, T.-K. (2005c). Algoriphagus locisalis sp. nov., isolated from a marine solar saltern. Int J Syst Evol Microbiol 55, 1635-1639.