-
1
-
-
0015361994
-
The formation and stabilization of protein structure
-
Anfinsen, C. B. (1972) The formation and stabilization of protein structure. Biochem. J., 128, 737-749.
-
(1972)
Biochem. J.
, vol.128
, pp. 737-749
-
-
Anfinsen, C.B.1
-
2
-
-
0015859467
-
Principles that govern the folding of protein chains
-
Anfinsen, C. B. (1973) Principles that govern the folding of protein chains. Science, 181, 223-230.
-
(1973)
Science
, vol.181
, pp. 223-230
-
-
Anfinsen, C.B.1
-
3
-
-
0037093649
-
Geometry and physics of proteins
-
DOI 10.1002/prot.10091
-
Banavar, J. R., Maritan, A., Micheletti, C. and Trovato, A. (2002) Geometry and physics of proteins. Proteins, 47, 315-322. (Pubitemid 34438681)
-
(2002)
Proteins: Structure, Function and Genetics
, vol.47
, Issue.3
, pp. 315-322
-
-
Banavar, J.R.1
Maritan, A.2
Micheletti, C.3
Trovato, A.4
-
4
-
-
0002006297
-
Are there pathways for protein folding?
-
Levinthal, C. (1968) Are there pathways for protein folding? J. Chim. Phys., 65, 44.
-
(1968)
J. Chim. Phys.
, vol.65
, pp. 44
-
-
Levinthal, C.1
-
5
-
-
0015834475
-
Comparison of super-secondary structures in proteins
-
Rao, S. T. and Rossmann, M. G. (1973) Comparison of super-secondary structures in proteins. J. Mol. Biol., 76, 241-256.
-
(1973)
J. Mol. Biol.
, vol.76
, pp. 241-256
-
-
Rao, S.T.1
Rossmann, M.G.2
-
7
-
-
0035478585
-
Macromolecular crowding: Obvious but underappreciated
-
DOI 10.1016/S0968-0004(01)01938-7, PII S0968000401019387
-
Ellis, R. J. (2001) Macromolecular crowding: Obvious but underappreciated. Trends Biochem. Sci., 26, 597-604. (Pubitemid 32925190)
-
(2001)
Trends in Biochemical Sciences
, vol.26
, Issue.10
, pp. 597-604
-
-
Ellis R.John1
-
8
-
-
0038141205
-
Classification schemes for protein structure and function
-
DOI 10.1038/nrg1113
-
Ouzounis, C. A., Coulson, R. M., Enright, A. J. et al. (2003) Classification schemes for protein structure and function. Nat. Rev. Genet., 4, 508-519. (Pubitemid 36781342)
-
(2003)
Nature Reviews Genetics
, vol.4
, Issue.7
, pp. 508-519
-
-
Ouzounis, C.A.1
Coulson, R.M.R.2
Enright, A.J.3
Kunin, V.4
Pereira-Leal, J.B.5
-
9
-
-
70349470948
-
Structural and functional constraints in the evolution of protein families
-
Worth, C. L., Gong, S. and Blundell, T. L. (2009) Structural and functional constraints in the evolution of protein families. Nat. Rev. Mol. Cell Biol., 10, 709-720.
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 709-720
-
-
Worth, C.L.1
Gong, S.2
Blundell, T.L.3
-
10
-
-
0036424666
-
Structural basis of macromolecular recognition
-
DOI 10.1016/S0065-3233(02)61001-0
-
Wodak, S. J. and Janin, J. (2002) Structural basis of macromolecular recognition. Adv. Protein Chem., 61, 9-73. (Pubitemid 35303453)
-
(2002)
Advances in Protein Chemistry
, vol.61
, pp. 9-73
-
-
Wodak, S.J.1
Janin, J.2
-
11
-
-
0032169688
-
PQS: A protein quaternary structure file server
-
DOI 10.1016/S0968-0004(98)01253-5, PII S0968000498012535
-
Henrick, K. and Thornton, J. M. (1998) PQS: A protein quaternary structure file server. Trends Biochem. Sci., 23, 358-361. (Pubitemid 28461869)
-
(1998)
Trends in Biochemical Sciences
, vol.23
, Issue.9
, pp. 358-361
-
-
Henrick, K.1
Thornton, J.M.2
-
12
-
-
22944475303
-
Protein oligomerization: How and why
-
DOI 10.1016/j.bmc.2005.05.037, PII S0968089605004748
-
Ali, M. H. and Imperiali, B. (2005) Protein oligomerization: How and why. Bioorg. Med. Chem., 13, 5013-5020. (Pubitemid 41043188)
-
(2005)
Bioorganic and Medicinal Chemistry
, vol.13
, Issue.17
, pp. 5013-5020
-
-
Ali, M.H.1
Imperiali, B.2
-
13
-
-
0028009297
-
Knowledge-based protein modeling
-
Johnson, M. S., Srinivasan, N., Sowdhamini, R. and Blundell, T. L. (1994) Knowledge-based protein modeling. Crit. Rev. Biochem. Mol. Biol., 29, 1-68. (Pubitemid 24053350)
-
(1994)
Critical Reviews in Biochemistry and Molecular Biology
, vol.29
, Issue.1
, pp. 1-68
-
-
Johnson, M.S.1
Srinivasan, N.2
Sowdhamini, R.3
Blundell, T.L.4
-
14
-
-
0029092779
-
One-step evolution of a dimer from a monomeric protein
-
Green, S. M., Gittis, A. G., Meeker, A. K. and Lattman, E. E. (1995) One-step evolution of a dimer from a monomeric protein. Nat. Struct. Biol., 2, 746-751.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 746-751
-
-
Green, S.M.1
Gittis, A.G.2
Meeker, A.K.3
Lattman, E.E.4
-
15
-
-
0036108484
-
3D domain swapping: As domains continue to swap
-
DOI 10.1110/ps.0201402
-
Liu, Y. and Eisenberg, D. (2002) 3D domain swapping: As domains continue to swap. Protein Sci., 11, 1285-1299. (Pubitemid 34547201)
-
(2002)
Protein Science
, vol.11
, Issue.6
, pp. 1285-1299
-
-
Liu, Y.1
Eisenberg, D.2
-
16
-
-
0032584210
-
The crystal structure of a 3D domain-swapped dimer of RNase A at a 2.1-A resolution
-
Liu, Y., Hart, P. J., Schlunegger, M. P. and Eisenberg, D. (1998) The crystal structure of a 3D domain-swapped dimer of RNase A at a 2.1-A resolution. Proc. Natl Acad. Sci. USA, 95, 3437-3442.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 3437-3442
-
-
Liu, Y.1
Hart, P.J.2
Schlunegger, M.P.3
Eisenberg, D.4
-
17
-
-
23944448528
-
Protein oligomerization through domain swapping: Role of inter-molecular interactions and protein concentration
-
DOI 10.1016/j.jmb.2005.06.062, PII S0022283605007461
-
Yang, S., Levine, H. and Onuchic, J. N. (2005) Protein oligomerization through domain swapping: Role of inter-molecular interactions and protein concentration. J. Mol. Biol., 352, 202-211. (Pubitemid 41207449)
-
(2005)
Journal of Molecular Biology
, vol.352
, Issue.1
, pp. 202-211
-
-
Yang, S.1
Levine, H.2
Onuchic, J.N.3
-
18
-
-
0028204771
-
Domain swapping: Entangling alliances between proteins
-
Bennett, M. J., Choe, S. and Eisenberg, D. (1994) Domain swapping: Entangling alliances between proteins. Proc. Natl Acad. Sci. USA, 91, 3127-3131. (Pubitemid 24130188)
-
(1994)
Proceedings of the National Academy of Sciences of the United States of America
, vol.91
, Issue.8
, pp. 3127-3131
-
-
Bennett, M.J.1
Choe, S.2
Eisenberg, D.3
-
19
-
-
0028077637
-
Refined structure of dimeric diphtheria toxin at 2.0 A resolution
-
Bennett, M. J., Choe, S. and Eisenberg, D. (1994) Refined structure of dimeric diphtheria toxin at 2.0 A resolution. Protein Sci, 3, 1444-1463. (Pubitemid 24314464)
-
(1994)
Protein Science
, vol.3
, Issue.9
, pp. 1444-1463
-
-
Bennett, M.J.1
Choe, S.2
Eisenberg, D.3
-
20
-
-
0001236723
-
On the aggregation of bovine pancreatic ribonuclease
-
Crestfield, A. M., Stein, W. H. and Moore, S. (1962) On the aggregation of bovine pancreatic ribonuclease. Arch. Biochem. Biophys. (Suppl 1), 217-222.
-
(1962)
Arch. Biochem. Biophys.
, Issue.SUPPL. 1
, pp. 217-222
-
-
Crestfield, A.M.1
Stein, W.H.2
Moore, S.3
-
21
-
-
0343807336
-
On the preparation of bovine pancreatic ribonuclease A
-
Crestfield, A. M., Stein, W. H. and Moore, S. (1963) On the preparation of bovine pancreatic ribonuclease A. J. Biol. Chem., 238, 618-621.
-
(1963)
J. Biol. Chem.
, vol.238
, pp. 618-621
-
-
Crestfield, A.M.1
Stein, W.H.2
Moore, S.3
-
22
-
-
0013805383
-
Preparation and properties of two active forms of ribonuclease dimer
-
Fruchter, R. G. and Crestfield, A. M. (1965) Preparation and properties of two active forms of ribonuclease dimer. J. Biol. Chem., 240, 3868-3874.
-
(1965)
J. Biol. Chem.
, vol.240
, pp. 3868-3874
-
-
Fruchter, R.G.1
Crestfield, A.M.2
-
23
-
-
34047243852
-
On the origin of the histone fold
-
Alva, V., Ammelburg, M., Soding, J. and Lupas, A. N. (2007) On the origin of the histone fold. BMC Struct. Biol., 7, 17.
-
(2007)
BMC Struct. Biol.
, vol.7
, pp. 17
-
-
Alva, V.1
Ammelburg, M.2
Soding, J.3
Lupas, A.N.4
-
24
-
-
0035757051
-
3D domain swapping, protein oligomerization, and amyloid formation
-
Jaskolski, M. (2001) 3D domain swapping, protein oligomerization, and amyloid formation. Acta Biochim. Pol., 48, 807-827. (Pubitemid 33602339)
-
(2001)
Acta Biochimica Polonica
, vol.48
, Issue.4
, pp. 807-827
-
-
Jaskolski, M.1
-
25
-
-
4143058003
-
The evolving role of 3D domain swapping in proteins
-
DOI 10.1016/j.str.2004.07.004, PII S0969212604002503
-
Bennett, M. J. and Eisenberg, D. (2004) The evolving role of 3D domain swapping in proteins. Structure, 12, 1339-1341. (Pubitemid 39092078)
-
(2004)
Structure
, vol.12
, Issue.8
, pp. 1339-1341
-
-
Bennett, M.J.1
Eisenberg, D.2
-
26
-
-
33646375442
-
Deposition Diseases and 3D Domain Swapping
-
DOI 10.1016/j.str.2006.03.011, PII S0969212606001791
-
Bennett, M. J., Sawaya, M. R. and Eisenberg, D. (2006) Deposition diseases and 3D domain swapping. Structure, 14, 811-824. (Pubitemid 43674098)
-
(2006)
Structure
, vol.14
, Issue.5
, pp. 811-824
-
-
Bennett, M.J.1
Sawaya, M.R.2
Eisenberg, D.3
-
27
-
-
0028865843
-
3D domain swapping: A mechanism for oligomer assembly
-
Bennett, M. J., Schlunegger, M. P. and Eisenberg, D. (1995) 3D domain swapping: A mechanism for oligomer assembly. Protein Sci., 4, 2455-2468.
-
(1995)
Protein Sci.
, vol.4
, pp. 2455-2468
-
-
Bennett, M.J.1
Schlunegger, M.P.2
Eisenberg, D.3
-
28
-
-
39349110541
-
Molecular mechanisms of polypeptide aggregation in human diseases
-
DOI 10.2174/138920307783018703
-
Khare, S. D. and Dokholyan, N. V. (2007) Molecular mechanisms of polypeptide aggregation in human diseases. Curr. Protein Pept. Sci., 8, 573-579. (Pubitemid 351266990)
-
(2007)
Current Protein and Peptide Science
, vol.8
, Issue.6
, pp. 573-579
-
-
Khare, S.D.1
Dokholyan, N.V.2
-
29
-
-
77951271571
-
Principles governing oligomer formation in amyloidogenic peptides
-
Straub, J. E. and Thirumalai, D. (2010) Principles governing oligomer formation in amyloidogenic peptides. Curr. Opin. Struct. Biol., 20, 187-195.
-
(2010)
Curr. Opin. Struct. Biol.
, vol.20
, pp. 187-195
-
-
Straub, J.E.1
Thirumalai, D.2
-
30
-
-
0037397705
-
Emerging ideas on the molecular basis of protein and peptide aggregation
-
DOI 10.1016/S0959-440X(03)00032-0
-
Thirumalai, D., Klimov, D. K. and Dima, R. I. (2003) Emerging ideas on the molecular basis of protein and peptide aggregation. Curr. Opin. Struct. Biol., 13, 146-159. (Pubitemid 36515142)
-
(2003)
Current Opinion in Structural Biology
, vol.13
, Issue.2
, pp. 146-159
-
-
Thirumalai, D.1
Klimov, D.K.2
Dima, R.I.3
-
31
-
-
0031932169
-
Protein aggregation: Folding aggregates, inclusion bodies and amyloid
-
DOI 10.1016/S1359-0278(98)00002-9
-
Fink, A. L. (1998) Protein aggregation: Folding aggregates, inclusion bodies and amyloid. Fold Des., 3, R9-R23. (Pubitemid 28085702)
-
(1998)
Folding and Design
, vol.3
, Issue.1
-
-
Fink, A.L.1
-
32
-
-
4644301408
-
Domain swapping is a consequence of minimal frustration
-
DOI 10.1073/pnas.0403724101
-
Yang, S., Cho, S. S., Levy, Y. et al. (2004) Domain swapping is a consequence of minimal frustration. Proc. Natl Acad. Sci. USA, 101, 13786-13791. (Pubitemid 39298485)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.38
, pp. 13786-13791
-
-
Yang, S.1
Cho, S.S.2
Levy, Y.3
Cheung, M.S.4
Levine, H.5
Wolynes, P.G.6
Onuchic, J.N.7
-
33
-
-
77954385000
-
A hinge region cis-proline in ribonuclease A acts as a conformational gatekeeper for C-terminal domain swapping
-
Miller, K. H., Karr, J. R. and Marqusee, S. (2010) A hinge region cis-proline in ribonuclease A acts as a conformational gatekeeper for C-terminal domain swapping. J. Mol. Biol., 400, 567-578.
-
(2010)
J. Mol. Biol.
, vol.400
, pp. 567-578
-
-
Miller, K.H.1
Karr, J.R.2
Marqusee, S.3
-
34
-
-
0030770294
-
Oligomer formation by 3D domain swapping: A model for protein assembly and misassembly
-
Schlunegger, M. P., Bennett, M. J. and Eisenberg, D. (1997) Oligomer formation by 3D domain swapping: A model for protein assembly and misassembly. Adv. Protein Chem., 50, 61-122. (Pubitemid 27449486)
-
(1997)
Advances in Protein Chemistry
, vol.50
, pp. 61-122
-
-
Schlunegger, M.P.1
Bennett, M.J.2
Eisenberg, D.3
-
35
-
-
47849087709
-
Helix swapping leads to dimerization of the N-terminal domain of the c-type cytochrome maturation protein CcmH from Escherichia coli
-
Ahuja, U., Rozhkova, A., Glockshuber, R. et al. (2008) Helix swapping leads to dimerization of the N-terminal domain of the c-type cytochrome maturation protein CcmH from Escherichia coli. FEBS Lett., 582, 2779-2786.
-
(2008)
FEBS Lett.
, vol.582
, pp. 2779-2786
-
-
Ahuja, U.1
Rozhkova, A.2
Glockshuber, R.3
-
36
-
-
34548042328
-
Bi-functional activities of chimeric lysozymes constructed by domain swapping between bacteriophage T7 and K11 lysozymes
-
Alcantara, E. H., Kim, D. H., Do, S. I. and Lee, S. S. (2007) Bi-functional activities of chimeric lysozymes constructed by domain swapping between bacteriophage T7 and K11 lysozymes. J. Biochem. Mol. Biol., 40, 539-546. (Pubitemid 47281474)
-
(2007)
Journal of Biochemistry and Molecular Biology
, vol.40
, Issue.4
, pp. 539-546
-
-
Alcantara, E.H.1
Dong, H.K.2
Do, S.-I.3
Sang, S.L.4
-
37
-
-
0033043389
-
Domain swapping used to investigate the mechanism of protein kinase B regulation by 3-phosphoinositide-dependent protein kinase 1 and Ser473 kinase
-
Andjelkovic, M., Maira, S. M., Cron, P. et al. (1999) Domain swapping used to investigate the mechanism of protein kinase B regulation by 3-phosphoinositide-dependent protein kinase 1 and Ser473 kinase. Mol. Cell Biol., 19, 5061-5072. (Pubitemid 29289544)
-
(1999)
Molecular and Cellular Biology
, vol.19
, Issue.7
, pp. 5061-5072
-
-
Andjelkovic, M.1
Maira, S.-M.2
Cron, P.3
Parker, P.J.4
Hemmings, B.A.5
-
38
-
-
57749186049
-
Three-dimensional domain swapping in nitrollin, a single-domain betagammacrystallin from Nitrosospira multiformis, controls protein conformation and stability but not dimerization
-
Aravind, P., Suman, S. K., Mishra, A. et al. (2009) Three-dimensional domain swapping in nitrollin, a single-domain betagammacrystallin from Nitrosospira multiformis, controls protein conformation and stability but not dimerization. J. Mol. Biol., 385, 163-177.
-
(2009)
J. Mol. Biol.
, vol.385
, pp. 163-177
-
-
Aravind, P.1
Suman, S.K.2
Mishra, A.3
-
39
-
-
0029956966
-
Identifying functional domains within terpene cyclases using a domain-swapping strategy
-
Back, K. and Chappell, J. (1996) Identifying functional domains within terpene cyclases using a domain-swapping strategy. Proc. Natl Acad. Sci. USA, 93, 6841-6845.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 6841-6845
-
-
Back, K.1
Chappell, J.2
-
40
-
-
0034732420
-
Cloning of a sesquiterpene cyclase and its functional expression by domain swapping strategy
-
Back, K., Nah, J., Lee, S. B. et al. (2000) Cloning of a sesquiterpene cyclase and its functional expression by domain swapping strategy. Mol. Cell., 10, 220-225.
-
(2000)
Mol. Cell.
, vol.10
, pp. 220-225
-
-
Back, K.1
Nah, J.2
Lee, S.B.3
-
41
-
-
4644263679
-
1 receptor
-
DOI 10.1124/jpet.104.067041
-
Bakker, R. A., Dees, G., Carrillo, J. J. et al. (2004) Domain swapping in the human histamine H1 receptor. J. Pharmacol. Exp. Ther., 311 131-138. (Pubitemid 39287792)
-
(2004)
Journal of Pharmacology and Experimental Therapeutics
, vol.311
, Issue.1
, pp. 131-138
-
-
Bakker, R.A.1
Dees, G.2
Carrillo, J.J.3
Booth, R.G.4
Lopez-Gimenez, J.F.5
Milligan, G.6
Strange, P.G.7
Leurs, R.8
-
42
-
-
0034212377
-
Evidence of domain swapping within the jumonji family of transcription factors
-
DOI 10.1016/S0968-0004(00)01593-0, PII S0968000400015930
-
Balciunas, D. and Ronne, H. (2000) Evidence of domain swapping within the jumonji family of transcription factors. Trends Biochem. Sci., 25, 274-276. (Pubitemid 30333385)
-
(2000)
Trends in Biochemical Sciences
, vol.25
, Issue.6
, pp. 274-276
-
-
Balciunas Darius1
Ronne, H.2
-
43
-
-
33847241526
-
Study of goldfish (Carassius auratus) growth hormone structure-function relationship by domain swapping
-
Chan, Y. H., Cheng, C. H. and Chan, K. M. (2007) Study of goldfish (Carassius auratus) growth hormone structure-function relationship by domain swapping. Comp. Biochem. Physiol. B Biochem. Mol. Biol., 146, 384-394.
-
(2007)
Comp. Biochem. Physiol. B Biochem. Mol. Biol.
, vol.146
, pp. 384-394
-
-
Chan, Y.H.1
Cheng, C.H.2
Chan, K.M.3
-
44
-
-
33947194326
-
Domain swapping reveals that the C- and N-terminal domains of DnaG and DnaB, respectively, are functional homologues
-
DOI 10.1111/j.1365-2958.2007.05617.x
-
Chintakayala, K., Larson, M. A., Grainger, W. H. et al. (2007) Domain swapping reveals that the C- And N-terminal domains of DnaG and DnaB, respectively, are functional homologues. Mol. Microbiol., 63, 1629-1639. (Pubitemid 46426699)
-
(2007)
Molecular Microbiology
, vol.63
, Issue.6
, pp. 1629-1639
-
-
Chintakayala, K.1
Larson, M.A.2
Grainger, W.H.3
Scott, D.J.4
Griep, M.A.5
Hinrichs, S.H.6
Soultanas, P.7
-
45
-
-
22244447465
-
Overcoming residual frustration in domain-swapping: The roles of disulfide bonds in dimerization and aggregation
-
DOI 10.1088/1478-3975/2/2/S05
-
Cho, S. S., Levy, Y., Onuchic, J. N. and Wolynes, P. G. (2005) Overcoming residual frustration in domain-swapping: The roles of disulfide bonds in dimerization and aggregation. Phys. Biol., 2, S44-S55. (Pubitemid 40991707)
-
(2005)
Physical Biology
, vol.2
, Issue.2
-
-
Cho, S.S.1
Levy, Y.2
Onuchic, J.N.3
Wolynes, P.G.4
-
46
-
-
0342980331
-
Characterization of the unfolding pathway of the cell-cycle protein p13suc1 by molecular dynamics simulations: Implications for domain swapping
-
DOI 10.1016/S0969-2126(00)00083-6
-
Alonso, D. O., Alm, E. and Daggett, V. (2000) Characterization of the unfolding pathway of the cell-cycle protein p13suc1 by molecular dynamics simulations Implications for domain swapping. Structure 8 101-110. (Pubitemid 30051346)
-
(2000)
Structure
, vol.8
, Issue.1
, pp. 101-110
-
-
Alonso, D.O.V.1
Alm, E.2
Daggett, V.3
-
47
-
-
14644408730
-
Insight into ribonuclease A domain swapping by molecular dynamics unfolding simulations
-
DOI 10.1021/bi0488350
-
Esposito, L. and Daggett, V. (2005) Insight into ribonuclease A domain swapping by molecular dynamics unfolding simulations. Biochemistry, 44, 3358-3368. (Pubitemid 40322006)
-
(2005)
Biochemistry
, vol.44
, Issue.9
, pp. 3358-3368
-
-
Esposito, L.1
Daggett, V.2
-
48
-
-
34250368085
-
Molecular dynamics simulations to investigate the domain swapping mechanism of human cystatin C
-
Lin, Y. M., Liu, H. L., Zhao, J. H. et al. (2007) Molecular dynamics simulations to investigate the domain swapping mechanism of human cystatin C. Biotechnol. Prog., 23, 577-584.
-
(2007)
Biotechnol. Prog.
, vol.23
, pp. 577-584
-
-
Lin, Y.M.1
Liu, H.L.2
Zhao, J.H.3
-
49
-
-
34548848283
-
Molecular dynamics simulations of human cystatin C and its L68Q varient to investigate the domain swapping mechanism
-
Liu, H. L., Lin, Y. M., Zhao, J. H. et al. (2007) Molecular dynamics simulations of human cystatin C and its L68Q varient to investigate the domain swapping mechanism. J. Biomol. Struct. Dyn., 25, 135-144.
-
(2007)
J. Biomol. Struct. Dyn.
, vol.25
, pp. 135-144
-
-
Liu, H.L.1
Lin, Y.M.2
Zhao, J.H.3
-
50
-
-
25844512145
-
Computational studies of the reversible domain swapping of p13suc1
-
DOI 10.1529/biophysj.105.062679
-
Chahine, J. and Cheung, M. S. (2005) Computational studies of the reversible domain swapping of p13suc1. Biophys. J., 89, 2693-2700. (Pubitemid 41401059)
-
(2005)
Biophysical Journal
, vol.89
, Issue.4
, pp. 2693-2700
-
-
Chahine, J.1
Cheung, M.S.2
-
51
-
-
38049184709
-
Elucidation of the ribonuclease A aggregation process mediated by 3D domain swapping: A computational approach reveals possible new multimeric structures
-
Cozza, G., Moro, S. and Gotte, G. (2008) Elucidation of the ribonuclease A aggregation process mediated by 3D domain swapping: A computational approach reveals possible new multimeric structures. Biopolymers, 89, 26-39.
-
(2008)
Biopolymers
, vol.89
, pp. 26-39
-
-
Cozza, G.1
Moro, S.2
Gotte, G.3
-
52
-
-
0033806215
-
Dimerization and domain swapping in G-protein-coupled receptors: A computational study
-
Gouldson, P. R., Higgs, C., Smith, R. E. et al. (2000) Dimerization and domain swapping in G-protein-coupled receptors: A computational study. Neuropsychopharmacology, 23, S60-S77.
-
(2000)
Neuropsychopharmacology
, vol.23
-
-
Gouldson, P.R.1
Higgs, C.2
Smith, R.E.3
-
53
-
-
77955242486
-
Insights into protein sequence and structure-derived features mediating 3D domain swapping mechanism using support vector machine based approach
-
Shameer, K., Pugalenthi, G., Kandaswamy, K. K. et al. (2010) Insights into protein sequence and structure-derived features mediating 3D domain swapping mechanism using support vector machine based approach. Bioinform. Biol. Insights, 4, 33-42.
-
(2010)
Bioinform. Biol. Insights
, vol.4
, pp. 33-42
-
-
Shameer, K.1
Pugalenthi, G.2
Kandaswamy, K.K.3
-
54
-
-
78149443849
-
Detection and alignment of 3D domain swapping proteins using angle-distance image-based secondary structural matching techniques
-
Chu, C. H., Lo, W. C., Wang, H. W. et al. (2010) Detection and alignment of 3D domain swapping proteins using angle-distance image-based secondary structural matching techniques. PLoS One, 5, e13361.
-
(2010)
PLoS One
, vol.5
-
-
Chu, C.H.1
Lo, W.C.2
Wang, H.W.3
-
55
-
-
0036700540
-
Three-dimensional domain swapping in homooligomeric proteins and its functional significance
-
DOI 10.1023/A:1019958402194
-
Nagradova, N. K. (2002) Three-dimensional domain swapping in homooligomeric proteins and its functional significance. Biochemistry, 67, 839-849. (Pubitemid 35208637)
-
(2002)
Biochemistry (Moscow)
, vol.67
, Issue.8
, pp. 839-849
-
-
Nagradova, N.K.1
-
56
-
-
0032714439
-
A potential allosteric subsite generated by domain swapping in bovine seminal ribonuclease
-
DOI 10.1006/jmbi.1999.3158
-
Vitagliano, L., Adinolfi, S., Sica, F. et al. (1999) A potential allosteric subsite generated by domain swapping in bovine seminal ribonuclease. J. Mol. Biol., 293, 569-577. (Pubitemid 29512057)
-
(1999)
Journal of Molecular Biology
, vol.293
, Issue.3
, pp. 569-577
-
-
Vitagliano, L.1
Adinolfi, S.2
Sica, F.3
Merlino, A.4
Zagari, A.5
Mazzarella, L.6
-
57
-
-
0031662892
-
Engineering an intertwined form of CD2 for stability and assembly
-
DOI 10.1038/1816
-
Murray, A. J., Head, J. G., Barker, J. J. and Brady, R. L. (1998) Engineering an intertwined form of CD2 for stability and assembly. Nat. Struct. Biol., 5, 778-782. (Pubitemid 28402080)
-
(1998)
Nature Structural Biology
, vol.5
, Issue.9
, pp. 778-782
-
-
Brady, R.L.1
-
58
-
-
0034737323
-
Domain swapping in the sporulation response regulator Spo0A
-
Lewis, R. J., Muchova, K., Brannigan, J. A. et al. (2000) Domain swapping in the sporulation response regulator Spo0 A. J. Mol. Biol., 297, 757-770.
-
(2000)
J. Mol. Biol.
, vol.297
, pp. 757-770
-
-
Lewis, R.J.1
Muchova, K.2
Brannigan, J.A.3
-
59
-
-
0034698120
-
Domain swapping in human alpha A and alpha B crystallins affects oligomerization and enhances chaperone-like activity
-
DOI 10.1074/jbc.M003307200
-
Kumar, L. V. and Rao, C. M. (2000) Domain swapping in human alpha A and alpha B crystallins affects oligomerization and enhances chaperone-like activity. J. Biol. Chem., 275, 22009-22013. (Pubitemid 30621776)
-
(2000)
Journal of Biological Chemistry
, vol.275
, Issue.29
, pp. 22009-22013
-
-
Kumar, L.V.S.1
Rao, C.M.2
-
60
-
-
0032474475
-
The structure of the monomeric porcine odorant binding protein sheds light on the domain swapping mechanism
-
DOI 10.1021/bi980179e
-
Spinelli, S., Ramoni, R., Grolli, S. et al. (1998) The structure of the monomeric porcine odorant binding protein sheds light on the domain swapping mechanism. Biochemistry, 37, 7913-7918. (Pubitemid 28307051)
-
(1998)
Biochemistry
, vol.37
, Issue.22
, pp. 7913-7918
-
-
Spinelli, S.1
Ramoni, R.2
Grolli, S.3
Bonicel, J.4
Cambillau, C.5
Tegoni, M.6
-
61
-
-
12344254020
-
Domain swapping and retroviral assembly
-
DOI 10.1016/j.molcel.2005.01.002, PII S109727650501004X
-
Kingston, R. L. and Vogt, V. M. (2005) Domain swapping and retroviral assembly. Mol. Cell, 17, 166-167. (Pubitemid 40138611)
-
(2005)
Molecular Cell
, vol.17
, Issue.2
, pp. 166-167
-
-
Kingston, R.L.1
Vogt, V.M.2
-
62
-
-
0035069135
-
Human cystatin C, an amyloidogenic protein, dimerizes through three-dimensional domain swapping
-
DOI 10.1038/86188
-
Janowski, R., Kozak, M., Jankowska, E. et al. (2001) Human cystatin C, an amyloidogenic protein, dimerizes through three-dimensional domain swapping. Nat. Struct. Biol., 8, 316-320. (Pubitemid 32275015)
-
(2001)
Nature Structural Biology
, vol.8
, Issue.4
, pp. 316-320
-
-
Janowski, R.1
Kozak, M.2
Jankowska, E.3
Grzonka, Z.4
Grubb, A.5
Abrahamson, M.6
Jaskolski, M.7
-
63
-
-
0032962457
-
Twilight zone of protein sequence alignments
-
Rost, B. (1999) Twilight zone of protein sequence alignments. Protein Eng., 12, 85-94. (Pubitemid 29103686)
-
(1999)
Protein Engineering
, vol.12
, Issue.2
, pp. 85-94
-
-
Rost, B.1
-
64
-
-
0009130599
-
A structural explanation for the twilight zone of protein sequence homology
-
Chung, S. Y. and Subbiah, S. (1996) A structural explanation for the twilight zone of protein sequence homology. Structure, 4, 1123-1127. (Pubitemid 27005379)
-
(1996)
Structure
, vol.4
, Issue.10
, pp. 1123-1127
-
-
Chung, S.Y.1
Subbiah, S.2
-
65
-
-
0034657791
-
The structure of the N-terminal actin-binding domain of human dystrophin and how mutations in this domain may cause Duchenne or Becker muscular dystrophy
-
DOI 10.1016/S0969-2126(00)00132-5
-
Norwood, F. L., Sutherland-Smith, A. J. et al. (2000) The structure of the N-terminal actin-binding domain of human dystrophin and how mutations in this domain may cause Duchenne or Becker muscular dystrophy. Structure, 8, 481-491. (Pubitemid 30304546)
-
(2000)
Structure
, vol.8
, Issue.5
, pp. 481-491
-
-
Norwood, F.L.M.1
Sutherland-Smith, A.J.2
Keep, N.H.3
Kendrick-Jones, J.4
-
66
-
-
3042846821
-
Crystal structure of a PIN (PilT N-terminus) domain (AF0591) from Archaeoglobus fulgidus at 1.90 A resolution
-
DOI 10.1002/prot.20090
-
Levin, I., Schwarzenbacher, R., Page, R. et al. (2004) Crystal structure of a PIN (PilT N-terminus) domain (AF0591) from Archaeoglobus fulgidus at 1.90 A resolution. Proteins, 56, 404-408. (Pubitemid 38850176)
-
(2004)
Proteins: Structure, Function and Genetics
, vol.56
, Issue.2
, pp. 404-408
-
-
Levin, I.1
Schwarzenbacher, R.2
Page, R.3
Abdubek, P.4
Ambing, E.5
Biorac, T.6
Brinen, L.S.7
Campbell, J.8
Canaves, J.M.9
Chiu, H.-J.10
Dai, X.11
Deacon, A.M.12
DiDonato, M.13
Elsliger, M.-A.14
Floyd, R.15
Godzik, A.16
Grittini, C.17
Grzechnik, S.K.18
Hampton, E.19
Jaroszewski, L.20
Karlak, C.21
Klock, H.E.22
Koesema, E.23
Kovarik, J.S.24
Kreusch, A.25
Kuhn, P.26
Lesley, S.A.27
McMullan, D.28
McPhillips, T.M.29
Miller, M.D.30
Morse, A.31
Moy, K.32
Ouyang, J.33
Quijano, K.34
Reyes, R.35
Rezezadeh, F.36
Robb, A.37
Sims, E.38
Spraggon, G.39
Stevens, R.C.40
Van Den Bedem, H.41
Velasquez, J.42
Vincent, J.43
Von Delft, F.44
Wang, X.45
West, B.46
Wolf, G.47
Xu, Q.48
Hodgson, K.O.49
Wooley, J.50
Wilson, I.A.51
more..
-
67
-
-
0032491207
-
Conformational changes occurring upon reduction and NO binding in nitrite reductase from Pseudomonas aeruginosa
-
DOI 10.1021/bi981348y
-
Nurizzo, D., Cutruzzola, F., Arese, M. et al. (1998) Conformational changes occurring upon reduction and NO binding in nitrite reductase from Pseudomonas aeruginosa. Biochemistry, 37, 13987-13996. (Pubitemid 28471231)
-
(1998)
Biochemistry
, vol.37
, Issue.40
, pp. 13987-13996
-
-
Nurizzo, D.1
Cutruzzola, F.2
Arese, M.3
Bourgeois, D.4
Brunori, M.5
Cambillau, C.6
Tegoni, M.7
-
68
-
-
33846036096
-
The worldwide Protein Data Bank (wwPDB): Ensuring a single, uniform archive of PDB data
-
DOI 10.1093/nar/gkl971
-
Berman, H., Henrick, K., Nakamura, H. and Markley, J. L. (2007) The worldwide Protein Data Bank (wwPDB): Ensuring a single, uniform archive of PDB data. Nucleic Acids Res., 35, D301-D303. (Pubitemid 46056219)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Berman, H.1
Henrick, K.2
Nakamura, H.3
Markley, J.L.4
-
69
-
-
34447498926
-
PDB improvement starts with data deposition [3]
-
DOI 10.1126/science.317.5835.195
-
Joosten, R. P. and Vriend, G. (2007) PDB improvement starts with data deposition. Science, 317, 195-196. (Pubitemid 47076180)
-
(2007)
Science
, vol.317
, Issue.5835
, pp. 195-196
-
-
Joosten, R.P.1
Vriend, G.2
-
70
-
-
34547873510
-
Enhancing the functional annotation of PDB structures in PDBsum using key figures extracted from the literature
-
DOI 10.1093/bioinformatics/btm085
-
Laskowski, R. A. (2007) Enhancing the functional annotation of PDB structures in PDBsum using key figures extracted from the literature. Bioinformatics, 23, 1824-1827. (Pubitemid 47250316)
-
(2007)
Bioinformatics
, vol.23
, Issue.14
, pp. 1824-1827
-
-
Laskowski, R.A.1
-
71
-
-
0028914725
-
An automatic method involving cluster analysis of secondary structures for the identification of domains in proteins
-
Sowdhamini, R. and Blundell, T. L. (1995) An automatic method involving cluster analysis of secondary structures for the identification of domains in proteins. Protein Sci., 4, 506-520.
-
(1995)
Protein Sci.
, vol.4
, pp. 506-520
-
-
Sowdhamini, R.1
Blundell, T.L.2
-
72
-
-
23144453476
-
DIAL: A web-based server for the automatic identification of structural domains in proteins
-
DOI 10.1093/nar/gki427
-
Pugalenthi, G., Archunan, G. and Sowdhamini, R. (2005) DIAL: A web-based server for the automatic identification of structural domains in proteins. Nucleic Acids Res., 33, W130-W132. (Pubitemid 44529894)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISS.
-
-
Pugalenthi, G.1
Archunan, G.2
Sowdhamini, R.3
-
73
-
-
36348990139
-
Frontiers of biomedical text mining: Current progress
-
DOI 10.1093/bib/bbm045, Special Issue: Current Progress in Bioinformatics: 2007
-
Zweigenbaum, P., Demner-Fushman, D., Yu, H. and Cohen, K. B. (2007) Frontiers of biomedical text mining: Current progress. Brief Bioinform., 8, 358-375. (Pubitemid 350142624)
-
(2007)
Briefings in Bioinformatics
, vol.8
, Issue.5
, pp. 358-375
-
-
Zweigenbaum, P.1
Demner-fushman, D.2
Yu, H.3
Cohen, K.B.4
-
74
-
-
46149102929
-
Seeking a New Biology through Text Mining
-
DOI 10.1016/j.cell.2008.06.029, PII S0092867408008167
-
Rzhetsky, A., Seringhaus, M. and Gerstein, M. (2008) Seeking a new biology through text mining. Cell, 134, 9-13. (Pubitemid 351905746)
-
(2008)
Cell
, vol.134
, Issue.1
, pp. 9-13
-
-
Rzhetsky, A.1
Seringhaus, M.2
Gerstein, M.3
-
75
-
-
75549089584
-
PDBe: Protein data bank in Europe
-
Velankar, S., Best, C., Beuth, B. et al. (2010) PDBe: Protein Data Bank in Europe. Nucleic Acids Res., 38, D308-D317.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Velankar, S.1
Best, C.2
Beuth, B.3
-
76
-
-
84875082594
-
-
The PyMOL Molecular Graphics System, Version 1.2r3pre, Schrödinger, LLC
-
The PyMOL Molecular Graphics System, Version 1.2r3pre, Schrödinger, LL C.
-
-
-
-
77
-
-
0034284122
-
Recent changes to RasMol, recombining the variants
-
DOI 10.1016/S0968-0004(00)01606-6, PII S0968000400016066
-
Bernstein, H. J. (2000) Recent changes to RasMol, recombining the variants. Trends Biochem. Sci., 25, 453-455. (Pubitemid 30662414)
-
(2000)
Trends in Biochemical Sciences
, vol.25
, Issue.9
, pp. 453-455
-
-
Bernstein, H.J.1
-
79
-
-
38549155006
-
AAindex: Amino acid index database, progress report 2008
-
DOI 10.1093/nar/gkm998
-
Kawashima, S., Pokarowski, P., Pokarowska, M. et al. (2008) AAindex: Amino acid index database, progress report 2008. Nucleic Acids Res., 36, D202-D205. (Pubitemid 351149722)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Kawashima, S.1
Pokarowski, P.2
Pokarowska, M.3
Kolinski, A.4
Katayama, T.5
Kanehisa, M.6
-
80
-
-
33747839468
-
ScanProsite: Detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins
-
DOI 10.1093/nar/gkl124
-
de Castro, E., Sigrist, C. J., Gattiker, A. et al. (2006) ScanProsite: Detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins. Nucleic Acids Res, 34, W362-W365. (Pubitemid 44538121)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.WEB. SERV. ISS.
-
-
De Castro, E.1
Sigrist, C.J.A.2
Gattiker, A.3
Bulliard, V.4
Langendijk-Genevaux, P.S.5
Gasteiger, E.6
Bairoch, A.7
Hulo, N.8
-
81
-
-
75549087533
-
PROSITE, a protein domain database for functional characterization and annotation
-
Sigrist, C. J., Cerutti, L., de Castro, E. et al. (2010) PROSITE, a protein domain database for functional characterization and annotation. Nucleic Acids Res., 38, D161-D166.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Sigrist, C.J.1
Cerutti, L.2
De Castro, E.3
-
82
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
Altschul, S. F., Madden, T. L., Schaffer, A. A. et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402. (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
83
-
-
33746124556
-
Biomolecules in the computer: Jmol to the rescue
-
Herráez, A. (2006) Biomolecules in the computer: Jmol to the rescue. Biochem. Educ., 34, 7.
-
(2006)
Biochem. Educ.
, vol.34
, pp. 7
-
-
Herráez, A.1
-
84
-
-
43349087708
-
Representing structural information with Ras
-
Chapter 5, Unit 5
-
Goodsell, D. S. (2005) Representing structural information with RasMol. Curr. Protoc. Bioinformatics, Chapter 5, Unit 5 4.
-
(2005)
Bioinformatics, Mol. Curr. Protoc
, pp. 4
-
-
Goodsell, D.S.1
-
85
-
-
0031714858
-
JOY: Protein sequence-structure representation and analysis
-
DOI 10.1093/bioinformatics/14.7.617
-
Mizuguchi, K., Deane, C. M., Blundell, T. L. et al. (1998) JOY: Protein sequence-structure representation and analysis. Bioinformatics, 14, 617-623. (Pubitemid 28461583)
-
(1998)
Bioinformatics
, vol.14
, Issue.7
, pp. 617-623
-
-
Mizuguchi, K.1
Deane, C.M.2
Blundell, T.L.3
Johnson, M.S.4
Overington, J.P.5
-
86
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W. and Sander, C. (1983) Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
87
-
-
58149187893
-
The GOA database in 2009-an integrated Gene Ontology Annotation resource
-
Barrell, D., Dimmer, E., Huntley, R. P. et al. (2009) The GOA database in 2009-an integrated Gene Ontology Annotation resource. Nucleic Acids Res., 37, D396-D403.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Barrell, D.1
Dimmer, E.2
Huntley, R.P.3
-
88
-
-
75549090603
-
The Pfam protein families database
-
Finn, R. D., Mistry, J., Tate, J. et al. (2010) The Pfam protein families database. Nucleic Acids Res, 38, D211-D222.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
-
89
-
-
13444288174
-
E-MSD: An integrated data resource for bioinformatics
-
DOI 10.1093/nar/gki058
-
Velankar, S., McNeil, P., Mittard-Runte, V. et al. (2005) E-MSD: An integrated data resource for bioinformatics. Nucleic Acids Res, 33, D262-D265. (Pubitemid 40207874)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.DATABASE ISS.
-
-
Velankar, S.1
McNeil, P.2
Mittard-Runte, V.3
Suarez, A.4
Barrell, D.5
Apweiler, R.6
Henrick, K.7
-
90
-
-
77954147818
-
Translational selection is ubiquitous in prokaryotes
-
Supek, F., Skunca, N., Repar, J. et al. (2010) Translational selection is ubiquitous in prokaryotes. PLoS Genet., 6, e1001004.
-
(2010)
PLoS Genet.
, vol.6
-
-
Supek, F.1
Skunca, N.2
Repar, J.3
-
91
-
-
58349111875
-
AmiGO: Online access to ontology and annotation data
-
Carbon, S., Ireland, A., Mungall, C. J. et al. (2009) AmiGO: Online access to ontology and annotation data. Bioinformatics, 25, 288-289.
-
(2009)
Bioinformatics
, vol.25
, pp. 288-289
-
-
Carbon, S.1
Ireland, A.2
Mungall, C.J.3
-
92
-
-
3242887157
-
CD-Search: Protein domain annotations on the fly
-
DOI 10.1093/nar/gkh454
-
Marchler-Bauer, A. and Bryant, S. H. (2004) CD-Search: Protein domain annotations on the fly. Nucleic Acids Res., 32, W327-W331. (Pubitemid 38997352)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.WEB SERVER ISS.
-
-
Marchler-Bauer, A.1
Bryant, S.H.2
-
93
-
-
33846033400
-
CDD: A conserved domain database for interactive domain family analysis
-
DOI 10.1093/nar/gkl951
-
Marchler-Bauer, A., Anderson, J. B., Derbyshire, M. K. et al. (2007) CDD: A conserved domain database for interactive domain family analysis. Nucleic Acids Res., 35, D237-D240. (Pubitemid 46056206)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Derbyshire, M.K.3
DeWeese-Scott, C.4
Gonzales, N.R.5
Gwadz, M.6
Hao, L.7
He, S.8
Hurwitz, D.I.9
Jackson, J.D.10
Ke, Z.11
Krylov, D.12
Lanczycki, C.J.13
Liebert, C.A.14
Liu, C.15
Lu, F.16
Lu, S.17
Marchler, G.H.18
Mullokandov, M.19
Song, J.S.20
Thanki, N.21
Yamashita, R.A.22
Yin, J.J.23
Zhang, D.24
Bryant, S.H.25
more..
-
94
-
-
78651285748
-
CDD: A conserved domain database for the functional annotation of proteins
-
Marchler-Bauer, A., Lu, S., Anderson, J. B. et al. (2011) CDD: A conserved domain database for the functional annotation of proteins. Nucleic Acids Res., 39, D225-D229.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Marchler-Bauer, A.1
Lu, S.2
Anderson, J.B.3
-
95
-
-
52949135772
-
IWS: Integrated web server for protein sequence and structure analysis
-
Shameer, K. and Sowdhamini, R. (2007) IWS: Integrated web server for protein sequence and structure analysis. Bioinformation, 2, 86-90.
-
(2007)
Bioinformation
, vol.2
, pp. 86-90
-
-
Shameer, K.1
Sowdhamini, R.2
-
96
-
-
0343621535
-
AAindex: Amino acid index database
-
Kawashima, S. and Kanehisa, M. (2000) AAindex: Amino acid index database. Nucleic Acids Res., 28, 374. (Pubitemid 30047811)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 374
-
-
Kawashima, S.1
Kanehisa, M.2
-
97
-
-
0001244666
-
ScanProsite: A reference implementation of a PROSITE scanning tool
-
Gattiker, A., Gasteiger, E. and Bairoch, A. (2002) ScanProsite: A reference implementation of a PROSITE scanning tool. Appl. Bioinformatics, 1, 107-108.
-
(2002)
Bioinformatics, Appl
, vol.1
, pp. 107-108
-
-
Gattiker, A.1
Gasteiger, E.2
Bairoch, A.3
-
98
-
-
77952726050
-
Curators of the world unite: The International Society of Biocuration
-
Bateman, A. (2010) Curators of the world unite: The International Society of Biocuration. Bioinformatics, 26, 991.
-
(2010)
Bioinformatics
, vol.26
, pp. 991
-
-
Bateman, A.1
-
99
-
-
51349115095
-
Big data: The future of biocuration
-
Howe, D., Costanzo, M., Fey, P. et al. (2008) Big data: The future of biocuration. Nature, 455, 47-50.
-
(2008)
Nature
, vol.455
, pp. 47-50
-
-
Howe, D.1
Costanzo, M.2
Fey, P.3
-
100
-
-
77953934646
-
BioModels database: An enhanced, curated and annotated resource for published quantitative kinetic models
-
Li, C., Donizelli, M., Rodriguez, N. et al. (2010) BioModels database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst. Biol., 4, 92.
-
(2010)
BMC Syst. Biol.
, vol.4
, pp. 92
-
-
Li, C.1
Donizelli, M.2
Rodriguez, N.3
-
101
-
-
75549084555
-
GeneSigDB-A curated database of gene expression signatures
-
Culhane, A. C., Schwarzl, T., Sultana, R. et al. (2010) GeneSigDB-a curated database of gene expression signatures. Nucleic Acids Res., 38, D716-D725.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Culhane, A.C.1
Schwarzl, T.2
Sultana, R.3
-
102
-
-
58149202167
-
HAMAP: A database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot
-
Lima, T., Auchincloss, A. H., Coudert, E. et al. (2009) HAMAP: A database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot. Nucleic Acids Res., 37, D471-D478.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Lima, T.1
Auchincloss, A.H.2
Coudert, E.3
-
103
-
-
33846057724
-
NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
-
DOI 10.1093/nar/gkl842
-
Pruitt, K. D., Tatusova, T. and Maglott, D. R. (2007) NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res., 35, D61-D65. (Pubitemid 46056171)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
104
-
-
33846108632
-
Defensins knowledgebase: A manually curated database and information source focused on the defensins family of antimicrobial peptides
-
DOI 10.1093/nar/gkl866
-
Seebah, S., Suresh, A., Zhuo, S. et al. (2007) Defensins knowledgebase: A manually curated database and information source focused on the defensins family of antimicrobial peptides. Nucleic Acids Res., 35, D265-D268. (Pubitemid 46056211)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Seebah, S.1
Suresh, A.2
Zhuo, S.3
Choong, Y.H.4
Chua, H.5
Chuon, D.6
Beuerman, R.7
Verma, C.8
-
105
-
-
33644876458
-
TreeFam: A curated database of phylogenetic trees of animal gene families
-
Li, H., Coghlan, A., Ruan, J. et al. (2006) TreeFam: A curated database of phylogenetic trees of animal gene families. Nucleic Acids Res., 34, D572-D580.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Li, H.1
Coghlan, A.2
Ruan, J.3
-
106
-
-
0031832544
-
The yeast protein database (YPD): A curated proteome database for Saccharomyces cerevisiae
-
DOI 10.1093/nar/26.1.68
-
Hodges, P. E., Payne, W. E. and Garrels, J. I. (1998) The Yeast Protein Database (YPD): A curated proteome database for Saccharomyces cerevisiae. Nucleic Acids Res., 26, 68-72. (Pubitemid 28295264)
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.1
, pp. 68-72
-
-
Hodges, P.E.1
Payne, W.E.2
Garrels, J.I.3
-
107
-
-
77955242486
-
Insights into protein sequence and structure-derived features mediating 3D domain swapping mechanism using support vector machine based approach
-
Shameer, K., Pugalenthi, G., Kandaswamy, K. K. et al. (2010) Insights into protein sequence and structure-derived features mediating 3D domain swapping mechanism using support vector machine based approach. Bioinformatics Biol. Insights, 4, 10.
-
(2010)
Bioinformatics Biol. Insights
, vol.4
, pp. 10
-
-
Shameer, K.1
Pugalenthi, G.2
Kandaswamy, K.K.3
-
108
-
-
79960575553
-
-
Random Forest Approach. Protein Pept Lett.
-
Shameer, K., Pugalenthi, G., Kandaswamy, K. K. et al. (2011) 3dswap-pred: Prediction of 3D Domain Swapping from Protein Sequence Using Random Forest Approach. Protein Pept Lett., 18.
-
(2011)
3dswap-pred: Prediction of 3D Domain Swapping from Protein Sequence Using
, pp. 18
-
-
Shameer, K.1
Pugalenthi, G.2
Kandaswamy, K.K.3
-
109
-
-
48349115184
-
A gene wiki for community annotation of gene function
-
Huss, J. W. 3rd, Orozco, C., Goodale, J. et al. (2008) A gene wiki for community annotation of gene function. PLoS Biol., 6, e175.
-
(2008)
PLoS Biol.
, vol.6
-
-
Huss III, J.W.1
Orozco, C.2
Goodale, J.3
-
110
-
-
77956545718
-
PDBWiki: Added value through community annotation of the Protein Data Bank
-
April 16( doi: 10.1093/database/baq009; epub ahead of print).
-
Stehr, H., Duarte, J. M., Lappe, M. et al. (2010) PDBWiki: Added value through community annotation of the Protein Data Bank. Database, April 16 (doi: 10.1093/database/baq009; epub ahead of print).
-
(2010)
Database
, pp. 111
-
-
Stehr, H.1
Duarte, J.M.2
Lappe, M.3
-
111
-
-
48349105261
-
WikiPathways: Pathway editing for the people
-
Pico, A. R., Kelder, T., van Iersel, M. P. et al. (2008) WikiPathways: Pathway editing for the people. PLoS Biol., 6, e184.
-
(2008)
PLoS Biol.
, vol.6
-
-
Pico, A.R.1
Kelder, T.2
Van Iersel, M.P.3
-
112
-
-
58149187899
-
The CATH classification revisited- Architectures reviewed and new ways to characterize structural divergence in superfamilies
-
Cuff, A. L., Sillitoe, I., Lewis, T. et al. (2009) The CATH classification revisited- Architectures reviewed and new ways to characterize structural divergence in superfamilies. Nucleic Acids Res., 37, D310-D314.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Cuff, A.L.1
Sillitoe, I.2
Lewis, T.3
-
113
-
-
78651324347
-
The STRING database in 2011: Functional interaction networks of proteins, globally integrated and scored
-
Szklarczyk, D., Franceschini, A., Kuhn, M. et al. (2011) The STRING database in 2011: Functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res., 39, D561-D568.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Szklarczyk, D.1
Franceschini, A.2
Kuhn, M.3
-
114
-
-
58149194624
-
SMART 6: Recent updates and new developments
-
Letunic, I., Doerks, T. and Bork, P. (2009) SMART 6: Recent updates and new developments. Nucleic Acids Res., 37, D229-D232.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Letunic, I.1
Doerks, T.2
Bork, P.3
-
115
-
-
76249090489
-
BioGPS: An extensible and customizable portal for querying and organizing gene annotation resources
-
Wu, C., Orozco, C., Boyer, J. et al. (2009) BioGPS: An extensible and customizable portal for querying and organizing gene annotation resources. Genome Biol., 10, R130.
-
(2009)
Genome Biol.
, vol.10
-
-
Wu, C.1
Orozco, C.2
Boyer, J.3
|