E-MSD: An integrated data resource for bioinformatics

Nucleic Acids Research

Volumn 33, Issue DATABASE ISS., 2005, Pages

  Velankar, S ^a   McNeil, P ^a   Mittard Runte, V ^a   Suarez, A ^a   Barrell, D ^a   Apweiler, R ^a   Henrick, K ^a  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; ARTICLE; BIOINFORMATICS; GENE MAPPING; INTERNET; MACROMOLECULAR STRUCTURE DATABASE; MACROMOLECULE; PRIORITY JOURNAL; PROTEIN DATA BANK; PROTEIN DATABASE; QUALITATIVE ANALYSIS; RELIABILITY; SEQUENCE ANALYSIS; SEQUENCE DATABASE; STRUCTURE ANALYSIS; TAXONOMY; UNIPROT; AMINO ACID SEQUENCE; CONTROLLED STUDY; INFORMATION PROCESSING; INFORMATION SYSTEM; INTERNATIONAL COOPERATION; QUALITY CONTROL;

AMINO ACID SEQUENCE; COMPUTATIONAL BIOLOGY; DATABASES, PROTEIN; PROTEINS; SYSTEMS INTEGRATION;

EID: 13444288174     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gki058     Document Type: Article

References (17)

1. Kulikova,T., Aldebert,P., Althorpe,N., Baker,W., Bates,K., Browne,P., van den Broek,A., Cochrane,G., Duggan,K., Eberhardt,R. et al. (2004) The EMBL Nucleotide Sequence Database. Nucleic Acids Res., 32, D27-D30.
2. Apweiler,R., Bairoch,A., Wu,C.H., Barker,W.C., Boeckmann,B., Ferro,S., Gasteiger,E., Huang,H., Lopez,R., Magrane,M. et al. (2004) UniProt: the Universal Protein knowledgebase. Nucleic Acids Res., 32, D115-D119.
3. Berman,H., Henrick,K. and Nakamura,H. (2003) Announcing the worldwide Protein Data Bank. Nature Struct. Biol., 10, 980.
4. Coulson,A.F. and Moult,J. (2002) A unifold, mesofold, and superfold model of protein fold use. Proteins, 46, 61-71.
5. Wheeler,D.L., Church,D.M., Edgar,R., Federhen,S., Helmberg,W., Madden,T.L., Pontius,J.U., Schuler,G.D., Schriml,L.M., Sequeira,E. et al. (2004) Database resources of the National Center for Biotechnology Information: update. Nucleic Acids Res., 32 D35-D40.
6. Andreeva,A., Howorth,D., Brenner,S.E., Hubbard,T.J., Chothia,C. and Murzin,A.G. (2004) SCOP database in 2004: refinements integrate structure and sequence family data. Nucleic Acids Res., 32, D226-D229.
7. Pearl,F.M., Lee,D., Bray,J.E., Sillitoe,I., Todd,A.E., Harrison,A.P., Thornton,J.M. and Orengo,C.A. (2000) Assigning genomic sequences to CATH. Nucleic Acids Res., 28, 277-282.
8. Bateman,A., Coin,L., Durbin,R., Finn,R.D., Hollich,V., Griffiths-Jones,S., Khanna,A., Marshall,M., Moxon,S., Sonnhammer,E.L. et al. (2004) The Pfam protein families database. Nucleic Acids Res., 32, D138-D141.
9. Mulder,N.J., Apweiler,R., Attwood,T.K., Bairoch,A., Barrell,D., Bateman,A., Binns,D., Biswas,M., Bradley,P., Bork,P. et al. (2003) The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res., 31, 315-318.
10. Camon,E., Magrane,M., Barrell,D., Lee,V., Dimmer,E., Maslen,J., Binns,D., Harte,N., Lopez,R. and Apweiler,R. (2004) The Gene Ontology Annotation (GOA) Database: sharing knowledge in UniProt with Gene Ontology. Nucleic Acids Res., 32, D262-D266.
11. Fleischmann,A., Darsow,M., Degtyarenko,K., Fleischmann,W., Boyce,S., Axelsen,K.B., Bairoch,A., Schomburg,D., Tipton,K.F. and Apweiler,R. (2004) IntEnz, the integrated relational enzyme database. Nucleic Acids Res., 32, D434-D437.
12. Hermjakob,H., Montecchi-Palazzi,L., Lewington,C., Mudali,S., Kerrien,S., Orchard,S., Vingron,M., Roechert,B., Roepstorff,P., Valencia,A. et al. (2004) IntAct: an open source molecular interaction database. Nucleic Acids Res., 32, D452-D455.
13. Thanaraj,T.A., Stamm,S., Clark,F., Riethoven,J.J., Le Texier,V. and Muilu,J. (2004) ASD: the Alternative Splicing Database. Nucleic Acids Res., 32, D64-D69.
14. Kanehisa,M., Goto,S., Kawashima,S., Okuno,Y. and Hattori,M. (2004) The KEGG resource for deciphering the genome. Nucleic Acids Res., 32, D277-D280.
15. Rawlings,N.D., Tolle,D.P. and Barrett,A.J. (2004) MEROPS: the peptidase database. Nucleic Acids Res., 32, D160-D164.
16. Martin,A.C. (2004) PDBSprotEC: a Web-accessible database linking PDB chains to EC numbers via SwissProt. Bioinformatics, 20, 986-988.
17. CCP4 (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr., D50, 760-763.