-
1
-
-
55749111082
-
Gene set enrichment analysis using linear models and diagnostics
-
Oron, A.P., Jiang, Z. and Gentleman, R. (2008) Gene set enrichment analysis using linear models and diagnostics. Bioinformatics, 24, 2586-2591.
-
(2008)
Bioinformatics
, vol.24
, pp. 2586-2591
-
-
Oron, A.P.1
Jiang, Z.2
Gentleman, R.3
-
2
-
-
34249663294
-
Analyzing gene expression data in terms of gene sets: methodological issues
-
Goeman, J.J. and Bühlmann, P. (2007) Analyzing gene expression data in terms of gene sets: methodological issues. Bioinformatics, 23, 980-987.
-
(2007)
Bioinformatics
, vol.23
, pp. 980-987
-
-
Goeman, J.J.1
Bühlmann, P.2
-
3
-
-
27344435774
-
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian, A., Tamayo, P., Mootha, V.K., Mukherjee, S., Ebert, B.L., Gillette, M.A., Paulovich, A., Pomeroy, S.L., Golub, T.R., Lander, E.S. et al. (2005) Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl Acad. Sci. USA, 102, 15545-15550.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
-
4
-
-
68849107487
-
Multigene classifiers, prognostic factors, and predictors of breast cancer clinical outcome
-
Ross, J.S. (2009) Multigene classifiers, prognostic factors, and predictors of breast cancer clinical outcome. Adv. Anat. Pathol., 16, 204-215.
-
(2009)
Adv. Anat. Pathol.
, vol.16
, pp. 204-215
-
-
Ross, J.S.1
-
5
-
-
39149113165
-
Development of the 21-gene assay and its application in clinical practice and clinical trials
-
Sparano, J.A. and Paik, S. (2008) Development of the 21-gene assay and its application in clinical practice and clinical trials. J. Clin. Oncol., 26, 721-728.
-
(2008)
J. Clin. Oncol.
, vol.26
, pp. 721-728
-
-
Sparano, J.A.1
Paik, S.2
-
6
-
-
39149123547
-
Clinical application of the 70-gene profile: the mindact trial
-
Cardoso, F., Veer, L.V., Rutgers, E., Loi, S., Mook, S. and Piccart-Gebhart, M.J. (2008) Clinical application of the 70-gene profile: the mindact trial. J. Clin. Oncol., 26, 729-735.
-
(2008)
J. Clin. Oncol.
, vol.26
, pp. 729-735
-
-
Cardoso, F.1
Veer, L.V.2
Rutgers, E.3
Loi, S.4
Mook, S.5
Piccart-Gebhart, M.J.6
-
7
-
-
33746910265
-
Concordance among gene-expression-based predictors for breast cancer
-
Fan, C., Oh, D.S., Wessels, L., Weigelt, B., Nuyten, D.S.A., Nobel, A.B., van'tVeer, L.J. and Perou, C.M. (2006) Concordance among gene-expression-based predictors for breast cancer. N. Engl. J. Med., 355, 560-569.
-
(2006)
N. Engl. J. Med.
, vol.355
, pp. 560-569
-
-
Fan, C.1
Oh, D.S.2
Wessels, L.3
Weigelt, B.4
Nuyten, D.S.A.5
Nobel, A.B.6
van'tVeer, L.J.7
Perou, C.M.8
-
8
-
-
20144386127
-
Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival
-
Chang, H.Y., Nuyten, D.S.A., Sneddon, J.B., Hastie, T., Tibshirani, R., Sørlie, T., Dai, H., He, Y.D., van'tVeer, L.J., Bartelink, H. et al. (2005) Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival. Proc. Natl Acad. Sci. USA, 102, 3738-3743.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 3738-3743
-
-
Chang, H.Y.1
Nuyten, D.S.A.2
Sneddon, J.B.3
Hastie, T.4
Tibshirani, R.5
Sørlie, T.6
Dai, H.7
He, Y.D.8
van'tVeer, L.J.9
Bartelink, H.10
-
9
-
-
26444563353
-
List of listsannotated (lola): a database for annotation and comparison of published microarray gene lists
-
Cahan, P., Ahmad, A.M., Burke, H., Fu, S., Lai, Y., Florea, L., Dharker, N., Kobrinski, T., Kale, P. et al. (2005) List of listsannotated (lola): a database for annotation and comparison of published microarray gene lists. Gene, 360, 78-82.
-
(2005)
Gene
, vol.360
, pp. 78-82
-
-
Cahan, P.1
Ahmad, A.M.2
Burke, H.3
Fu, S.4
Lai, Y.5
Florea, L.6
Dharker, N.7
Kobrinski, T.8
Kale, P.9
-
10
-
-
33645292598
-
A library of gene expression signatures to illuminate normal and pathological lymphoid biology
-
Shaffer, A.L., Wright, G., Yang, L., Powell, J., Ngo, V., Lamy, L., Lam, L.T., Davis, R.E. and Staudt, L.M. (2006) A library of gene expression signatures to illuminate normal and pathological lymphoid biology. Immunol. Rev., 210, 67-85.
-
(2006)
Immunol. Rev.
, vol.210
, pp. 67-85
-
-
Shaffer, A.L.1
Wright, G.2
Yang, L.3
Powell, J.4
Ngo, V.5
Lamy, L.6
Lam, L.T.7
Davis, R.E.8
Staudt, L.M.9
-
11
-
-
33846115005
-
Cancergenes: a gene selection resource for cancer genome projects
-
Higgins, M.E., Claremont, M., Major, J.E., Sander, C. and Lash, A.E. (2007) Cancergenes: a gene selection resource for cancer genome projects. Nucleic Acids Res, 35, D721-D726.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Higgins, M.E.1
Claremont, M.2
Major, J.E.3
Sander, C.4
Lash, A.E.5
-
12
-
-
38649085333
-
Novel definition files for human GeneChips based on GeneAnnot
-
Ferrari, F., Bortoluzzi, S., Coppe, A., Sirota, A., Safran, M., Shmoish, M., Ferrari, S., Lancet, D., Danieli, G.A. and Bicciato, S. (2007) Novel definition files for human GeneChips based on GeneAnnot. BMC Bioinformatics, 8, 446.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 446
-
-
Ferrari, F.1
Bortoluzzi, S.2
Coppe, A.3
Sirota, A.4
Safran, M.5
Shmoish, M.6
Ferrari, S.7
Lancet, D.8
Danieli, G.A.9
Bicciato, S.10
-
13
-
-
34247349497
-
Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: high-resolution annotation for microarrays
-
Lu, J., Lee, J.C., Salit, M.L. and Cam, M.C. (2007) Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: high-resolution annotation for microarrays. BMC Bioinformatics, 8, 108.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 108
-
-
Lu, J.1
Lee, J.C.2
Salit, M.L.3
Cam, M.C.4
-
14
-
-
75849159668
-
Comparison of three microarray probe annotation pipelines: differences in strategies and their effect on downstream analysis
-
Neerincx, P.B., Casel, P., Prickett, D., Nie, H., Watson, M., Leunissen, J.A., Groenen, M.A. and Klopp, C. (2009) Comparison of three microarray probe annotation pipelines: differences in strategies and their effect on downstream analysis. BMC Proc., 3(Suppl. 4), S1.
-
(2009)
BMC Proc.
, vol.3
, Issue.SUPPL. 4
-
-
Neerincx, P.B.1
Casel, P.2
Prickett, D.3
Nie, H.4
Watson, M.5
Leunissen, J.A.6
Groenen, M.A.7
Klopp, C.8
-
15
-
-
51649109809
-
Lobular and ductal carcinomas of the breast have distinct genomic and expression profiles
-
Bertucci, F., Orsetti, B., Nègre, V., Finetti, P., Rougé, C., Ahomadegbe, J.-C., Bibeau, F., Mathieu, M.-C., Treilleux, I., Jacquemier, J. et al. (2008) Lobular and ductal carcinomas of the breast have distinct genomic and expression profiles. Oncogene, 27, 5359-5372.
-
(2008)
Oncogene
, vol.27
, pp. 5359-5372
-
-
Bertucci, F.1
Orsetti, B.2
Nègre, V.3
Finetti, P.4
Rougé, C.5
Ahomadegbe, J.-C.6
Bibeau, F.7
Mathieu, M.-C.8
Treilleux, I.9
Jacquemier, J.10
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