-
1
-
-
0023449962
-
Spin glasses and the statistical mechanics of protein folding
-
Bryngelson J D and Wolynes P G 1987 Spin glasses and the statistical mechanics of protein folding Proc. Natl Acad. Sci. USA 84 7524-8
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 7524-7528
-
-
Bryngelson, J.D.1
Wolynes, P.G.2
-
2
-
-
0034685604
-
Topological and energetic factors: What determines the structural details of the transition state ensemble and 'en-route' intermediates for protein folding? An investigation for small globular proteins
-
Clementi C, Nymeyer H and Onuchic J N 2000 Topological and energetic factors: what determines the structural details of the transition state ensemble and 'en-route' intermediates for protein folding? An investigation for small globular proteins J. Mol. Biol. 298 937-53
-
(2000)
J. Mol. Biol.
, vol.298
, pp. 937-953
-
-
Clementi, C.1
Nymeyer, H.2
Onuchic, J.N.3
-
4
-
-
0035850732
-
Roles of native topology and chain-length scaling in protein folding: A simulation study with a Go-like model
-
Koga N and Takada S 2001 Roles of native topology and chain-length scaling in protein folding: a simulation study with a Go-like model J. Mol. Biol. 313 171-80
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 171-180
-
-
Koga, N.1
Takada, S.2
-
5
-
-
3142782241
-
Quantifying the roughness on the free energy landscape: Entropic bottlenecks and protein folding rates
-
Chavez L L, Onuchic J N and Clementi C 2004 Quantifying the roughness on the free energy landscape: entropic bottlenecks and protein folding rates J. Am. Chem. Soc. 126 8426-32
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 8426-8432
-
-
Chavez, L.L.1
Onuchic, J.N.2
Clementi, C.3
-
6
-
-
0034705115
-
How native-state topology affects the folding of dihydrofolate reductase and interleukin-1beta
-
Clementi C, Jennings P A and Onuchic J N 2000 How native-state topology affects the folding of dihydrofolate reductase and interleukin-1beta Proc. Natl Acad. Sci. USA 97 5871-6
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 5871-5876
-
-
Clementi, C.1
Jennings, P.A.2
Onuchic, J.N.3
-
8
-
-
13444301037
-
A survey of flexible protein binding mechanisms and their transition states using native topology based energy landscapes
-
Levy Y, Cho S S, Onuchic J N and Wolynes P G 2005 A survey of flexible protein binding mechanisms and their transition states using native topology based energy landscapes J. Mol. Biol. 346 1121-45
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 1121-1145
-
-
Levy, Y.1
Cho, S.S.2
Onuchic, J.N.3
Wolynes, P.G.4
-
9
-
-
4644301408
-
Domain swapping is a consequence of minimal frustration
-
Yang S et al 2004 Domain swapping is a consequence of minimal frustration Proc. Natl Acad. Sci. USA 101 13786-91
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 13786-13791
-
-
Yang, S.1
-
12
-
-
0032463747
-
All in the family: Structural and evolutionary relationships among three modular proteins with diverse functions and variable assembly
-
Bergdoll M, Eltis L D, Cameron A D, Dumas P and Bolin J T 1998 All in the family: structural and evolutionary relationships among three modular proteins with diverse functions and variable assembly Protein Sci. 7 1661-70
-
(1998)
Protein Sci.
, vol.7
, pp. 1661-1670
-
-
Bergdoll, M.1
Eltis, L.D.2
Cameron, A.D.3
Dumas, P.4
Bolin, J.T.5
-
13
-
-
0035826713
-
Three-dimensional domain swapping in p13suc1 occurs in the unfolded state and is controlled by conserved proline residues
-
Rousseau F, Schymkowitz J W, Wilkinson H R and Itzhaki L S 2001 Three-dimensional domain swapping in p13suc1 occurs in the unfolded state and is controlled by conserved proline residues Proc. Natl Acad. Sci. USA 98 5596-601
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 5596-5601
-
-
Rousseau, F.1
Schymkowitz, J.W.2
Wilkinson, H.R.3
Itzhaki, L.S.4
-
14
-
-
0036108484
-
3D domain swapping: As domains continue to swap
-
Liu Y and Eisenberg D 2002 3D domain swapping: as domains continue to swap Protein Sci. 11 1285-99
-
(2002)
Protein Sci.
, vol.11
, pp. 1285-1299
-
-
Liu, Y.1
Eisenberg, D.2
-
15
-
-
0033773675
-
Dimer formation by a 'monomeric' protein
-
Park C and Raines R T 2000 Dimer formation by a 'monomeric' protein Protein Sci. 9 2026-33
-
(2000)
Protein Sci.
, vol.9
, pp. 2026-2033
-
-
Park, C.1
Raines, R.T.2
-
16
-
-
0036297347
-
Domain-swapped structure of a mutant of cyanovirin-N Biochem
-
Botos I, Mori T, Cartner L K, Boyd M R and Wlodawer A 2002 Domain-swapped structure of a mutant of cyanovirin-N Biochem. Biophys. Res. Commun. 294 184-90
-
(2002)
Biophys. Res. Commun.
, vol.294
, pp. 184-190
-
-
Botos, I.1
Mori, T.2
Cartner, L.K.3
Boyd, M.R.4
Wlodawer, A.5
-
17
-
-
0035127031
-
A domain-swapped RNase a dimer with implications for amyloid formation
-
Liu Y, Gotte G, Libonati M and Eisenberg D 2001 A domain-swapped RNase A dimer with implications for amyloid formation Nat Struct. Biol. 8 211-4
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 211-214
-
-
Liu, Y.1
Gotte, G.2
Libonati, M.3
Eisenberg, D.4
-
18
-
-
0030770294
-
Oligomer formation by 3D domain swapping: A model for protein assembly and misassembly
-
Schlunegger M P, Bennett M J and Eisenberg D 1997 Oligomer formation by 3D domain swapping: a model for protein assembly and misassembly Adv. Protein Chem. 50 61-122
-
(1997)
Adv. Protein Chem.
, vol.50
, pp. 61-122
-
-
Schlunegger, M.P.1
Bennett, M.J.2
Eisenberg, D.3
-
19
-
-
0031711595
-
Pathologic conformations of prion proteins
-
Cohen F E and Prusiner S B 1998 Pathologic conformations of prion proteins Annu. Rev. Biochem. 67 793-819
-
(1998)
Annu. Rev. Biochem.
, vol.67
, pp. 793-819
-
-
Cohen, F.E.1
Prusiner, S.B.2
-
20
-
-
0034869693
-
Crystal structure of the human prion protein reveals a mechanism for oligomerization
-
Knaus K J, Morillas M, Swietnicki W, Malone M, Surewicz W K and Yee V C 2001 Crystal structure of the human prion protein reveals a mechanism for oligomerization Nat. Struct. Biol. 8 770-4
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 770-774
-
-
Knaus, K.J.1
Morillas, M.2
Swietnicki, W.3
Malone, M.4
Surewicz, W.K.5
Yee, V.C.6
-
21
-
-
0035069135
-
Human cystatin C, an amyloidogenic protein, dimerizes through three-dimensional domain swapping
-
Janowski R et al 2001 Human cystatin C, an amyloidogenic protein, dimerizes through three-dimensional domain swapping Nat. Struct. Biol. 8 316-20
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 316-320
-
-
Janowski, R.1
-
23
-
-
0042320356
-
Seeded conversion of recombinant prion protein to a disulfide-bonded oligomer by a reduction-oxidation process
-
Lee S and Eisenberg D 2003 Seeded conversion of recombinant prion protein to a disulfide-bonded oligomer by a reduction-oxidation process Nat. Struct. Biol. 10 725-30
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 725-730
-
-
Lee, S.1
Eisenberg, D.2
-
24
-
-
0028205447
-
Enlarged representative set of protein structures
-
Hobohm U and Sander C 1994 Enlarged representative set of protein structures Protein Sci. 3 522-4
-
(1994)
Protein Sci.
, vol.3
, pp. 522-524
-
-
Hobohm, U.1
Sander, C.2
-
25
-
-
0036923039
-
Molecular dynamics simulation of the SH3 domain aggregation suggests a generic amyloidogenesis mechanism
-
Ding F, Dokholyan N V, Buldyrev S V, Stanley H E and Shakhnovich E I 2002 Molecular dynamics simulation of the SH3 domain aggregation suggests a generic amyloidogenesis mechanism J. Mol. Biol. 324 851-7
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 851-857
-
-
Ding, F.1
Dokholyan, N.V.2
Buldyrev, S.V.3
Stanley, H.E.4
Shakhnovich, E.I.5
-
26
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W and Sander C 1983 Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features Biopolymers 22 2577-637
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
27
-
-
13044272912
-
Automated analysis of interatomic contacts in proteins
-
Sobolev V, Sorokine A, Prilusky J, Abola E E and Edelman M 1999 Automated analysis of interatomic contacts in proteins Bioinformatics 15 327-32
-
(1999)
Bioinformatics
, vol.15
, pp. 327-332
-
-
Sobolev, V.1
Sorokine, A.2
Prilusky, J.3
Abola, E.E.4
Edelman, M.5
-
28
-
-
0037126686
-
Proline cis-trans isomerization and protein folding
-
Wedemeyer W J, Welker E and Scheraga H A 2002 Proline cis-trans isomerization and protein folding Biochemistry 41 14637-44
-
(2002)
Biochemistry
, vol.41
, pp. 14637-14644
-
-
Wedemeyer, W.J.1
Welker, E.2
Scheraga, H.A.3
-
29
-
-
17144424217
-
The role of the hinge loop in domain-swapping: The special case of Bovine seminal Ribonuclease
-
Picone D et al 2005 The role of the hinge loop in domain-swapping: the special case of Bovine seminal Ribonuclease J. Biol. Chem. 280 13771-8
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 13771-13778
-
-
Picone, D.1
-
30
-
-
0026354773
-
High resolution structure of an oligomeric eye lens beta-crystallin. Loops, arches, linkers and interfaces in beta B2 dimer compared to a monomeric gamma-crystallin
-
Lapatto R et al 1991 High resolution structure of an oligomeric eye lens beta-crystallin. Loops, arches, linkers and interfaces in beta B2 dimer compared to a monomeric gamma-crystallin J. Mol. Biol. 222 1067-83
-
(1991)
J. Mol. Biol.
, vol.222
, pp. 1067-1083
-
-
Lapatto, R.1
-
31
-
-
0000522537
-
Crystal structure of a dimeric chymotrypsin inhibitor 2 mutant containing an inserted glutamine repeat
-
Chen Y W, Stott K and Perutz M F 1999 Crystal structure of a dimeric chymotrypsin inhibitor 2 mutant containing an inserted glutamine repeat Proc. Natl Acad. Sci. USA 96 1257-61
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 1257-1261
-
-
Chen, Y.W.1
Stott, K.2
Perutz, M.F.3
-
32
-
-
0000384736
-
Alternative explanations for 'multistate' kinetics in protein folding: Transient aggregation and changing transition-state ensembles
-
Oliveberg M 1998 Alternative explanations for 'multistate' kinetics in protein folding: transient aggregation and changing transition-state ensembles Acc. Chem. Res. 31 765-72
-
(1998)
Acc. Chem. Res.
, vol.31
, pp. 765-772
-
-
Oliveberg, M.1
-
33
-
-
0033532212
-
Crystal structure of cyanovirin-N, a potent HIV-inactivating protein, shows unexpected domain swapping
-
Yang F et al 1999 Crystal structure of cyanovirin-N, a potent HIV-inactivating protein, shows unexpected domain swapping J. Mol. Biol. 288 403-12
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 403-412
-
-
Yang, F.1
-
34
-
-
0031559753
-
Analysis of sequence requirements for biological activity of cyanovirin-N, a potent HIV (human immunodeficiency virus)-inactivating protein
-
Mori T et al 1997 Analysis of sequence requirements for biological activity of cyanovirin-N, a potent HIV (human immunodeficiency virus)-inactivating protein Biochem. Biophys. Res. Commun. 238 218-22
-
(1997)
Biochem. Biophys. Res. Commun.
, vol.238
, pp. 218-222
-
-
Mori, T.1
-
35
-
-
0036113691
-
The domain-swapped dimer of cyanovirin-N is in a metastable folded state: Reconciliation of X-ray and NMR structures
-
Barrientos L G et al 2002 The domain-swapped dimer of cyanovirin-N is in a metastable folded state: reconciliation of X-ray and NMR structures Structure (Camb.) 10 673-86
-
(2002)
Structure (Camb.)
, vol.10
, pp. 673-686
-
-
Barrientos, L.G.1
-
36
-
-
4644253146
-
Flipping the switch from monomeric to dimeric CV-N has little effect on antiviral activity
-
Barrientos L G, Lasala F, Delgado R, Sanchez A and Gronenborn A M 2004 Flipping the switch from monomeric to dimeric CV-N has little effect on antiviral activity Structure (Camb.) 12 1799-807
-
(2004)
Structure (Camb.)
, vol.12
, pp. 1799-1807
-
-
Barrientos, L.G.1
Lasala, F.2
Delgado, R.3
Sanchez, A.4
Gronenborn, A.M.5
-
37
-
-
0037031950
-
Intramolecular versus intermolecular disulfide bonds in prion proteins
-
Welker E, Raymond L D, Scheraga H A and Caughey B 2002 Intramolecular versus intermolecular disulfide bonds in prion proteins J. Biol. Chem. 277 33477-81
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 33477-33481
-
-
Welker, E.1
Raymond, L.D.2
Scheraga, H.A.3
Caughey, B.4
-
38
-
-
1842663089
-
Prions: So many fibers, so little infectivity
-
May B C, Govaerts C, Prusiner S B and Cohen F E 2004 Prions: so many fibers, so little infectivity Trends Biochem. Sci. 29 162-5
-
(2004)
Trends Biochem. Sci.
, vol.29
, pp. 162-165
-
-
May, B.C.1
Govaerts, C.2
Prusiner, S.B.3
Cohen, F.E.4
-
40
-
-
0030579560
-
Prionics or the kinetic basis of prion diseases
-
Eigen M 1996 Prionics or the kinetic basis of prion diseases Biophys. Chem. 63 A1-18
-
(1996)
Biophys. Chem.
, vol.63
-
-
Eigen, M.1
-
41
-
-
0032968132
-
Quantifying the kinetic parameters of prion replication
-
Masel J, Jansen V A and Nowak M A 1999 Quantifying the kinetic parameters of prion replication Biophys. Chem. 77 139-52
-
(1999)
Biophys. Chem.
, vol.77
, pp. 139-152
-
-
Masel, J.1
Jansen, V.A.2
Nowak, M.A.3
-
42
-
-
0034699419
-
Thiol-disulfide interchange a potential key to conformational change associated with amyloid fibril formation
-
Feughelman M and Willis B K 2000 Thiol-disulfide interchange a potential key to conformational change associated with amyloid fibril formation J. Theor. Biol. 206 313-5
-
(2000)
J. Theor. Biol.
, vol.206
, pp. 313-315
-
-
Feughelman, M.1
Willis, B.K.2
|