-
1
-
-
33745402414
-
A novel class of small RNAs bind to MILI protein in mouse testes
-
Aravin A., Gaidatzis D., Pfeffer S., Lagos-Quintana M., Landgraf P., Iovino N., Morris P., Brownstein M.J., Kuramochi-Miyagawa S., Nakano T., Chien M., Russo J.J., Ju J., Sheridan R., Sander C., Zavolan M., Tuschl T. A novel class of small RNAs bind to MILI protein in mouse testes. Nature 2006, 442:203-207.
-
(2006)
Nature
, vol.442
, pp. 203-207
-
-
Aravin, A.1
Gaidatzis, D.2
Pfeffer, S.3
Lagos-Quintana, M.4
Landgraf, P.5
Iovino, N.6
Morris, P.7
Brownstein, M.J.8
Kuramochi-Miyagawa, S.9
Nakano, T.10
Chien, M.11
Russo, J.J.12
Ju, J.13
Sheridan, R.14
Sander, C.15
Zavolan, M.16
Tuschl, T.17
-
2
-
-
49949116902
-
The impact of microRNAs on protein output
-
Baek D., Villen J., Shin C., Camargo F.D., Gygi S.P., Bartel D.P. The impact of microRNAs on protein output. Nature 2008, 455:64-71.
-
(2008)
Nature
, vol.455
, pp. 64-71
-
-
Baek, D.1
Villen, J.2
Shin, C.3
Camargo, F.D.4
Gygi, S.P.5
Bartel, D.P.6
-
3
-
-
58249088751
-
MicroRNAs: target recognition and regulatory functions
-
Bartel D.P. MicroRNAs: target recognition and regulatory functions. Cell 2009, 136:215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
4
-
-
77955281697
-
Experimentally based sea urchin gene regulatory network and the causal explanation of developmental phenomenology
-
Ben-Tabou de-Leon S., Davidson E.H. Experimentally based sea urchin gene regulatory network and the causal explanation of developmental phenomenology. Wiley Interdiscip. Rev. Syst. Biol. Med. 2009, 1:237-246.
-
(2009)
Wiley Interdiscip. Rev. Syst. Biol. Med.
, vol.1
, pp. 237-246
-
-
Ben-Tabou de-Leon, S.1
Davidson, E.H.2
-
5
-
-
0345865009
-
GenBank: update
-
Benson D.A., Karsch-Mizrachi I., Lipman D.J., Ostell J., Wheeler D.L. GenBank: update. Nucleic Acids Res. 2004, 32:D23-D26.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
6
-
-
37349039355
-
Computational analysis of small RNA cloning data
-
Berninger P., Gaidatzis D., van Nimwegen E., Zavolan M. Computational analysis of small RNA cloning data. Methods 2008, 44:13-21.
-
(2008)
Methods
, vol.44
, pp. 13-21
-
-
Berninger, P.1
Gaidatzis, D.2
van Nimwegen, E.3
Zavolan, M.4
-
7
-
-
33947273235
-
Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila
-
Brennecke J., Aravin A.A., Stark A., Dus M., Kellis M., Sachidanandam R., Hannon G.J. Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 2007, 128:1089-1103.
-
(2007)
Cell
, vol.128
, pp. 1089-1103
-
-
Brennecke, J.1
Aravin, A.A.2
Stark, A.3
Dus, M.4
Kellis, M.5
Sachidanandam, R.6
Hannon, G.J.7
-
8
-
-
58849093262
-
Revisiting the principles of microRNA target recognition and mode of action
-
Brodersen P., Voinnet O. Revisiting the principles of microRNA target recognition and mode of action. Nat. Rev. Mol. Cell Biol. 2009, 10:141-148.
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 141-148
-
-
Brodersen, P.1
Voinnet, O.2
-
9
-
-
41449110693
-
Temporal reciprocity of miRNAs and their targets during the maternal-to-zygotic transition in Drosophila
-
Bushati N., Stark A., Brennecke J., Cohen S.M. Temporal reciprocity of miRNAs and their targets during the maternal-to-zygotic transition in Drosophila. Curr. Biol. 2008, 18:501-506.
-
(2008)
Curr. Biol.
, vol.18
, pp. 501-506
-
-
Bushati, N.1
Stark, A.2
Brennecke, J.3
Cohen, S.M.4
-
10
-
-
67649606852
-
Blocking dishevelled signaling in the noncanonical Wnt pathway in sea urchins disrupts endoderm formation and spiculogenesis, but not secondary mesoderm formation
-
Byrum C.A., Xu R., Bince J.M., McClay D.R., Wikramanayake A.H. Blocking dishevelled signaling in the noncanonical Wnt pathway in sea urchins disrupts endoderm formation and spiculogenesis, but not secondary mesoderm formation. Dev. Dyn. 2009, 238:1649-1665.
-
(2009)
Dev. Dyn.
, vol.238
, pp. 1649-1665
-
-
Byrum, C.A.1
Xu, R.2
Bince, J.M.3
McClay, D.R.4
Wikramanayake, A.H.5
-
11
-
-
78650942892
-
MicroRNA complements in deuterostomes: origin and evolution of microRNAs
-
Campo-Paysaa F., Semon M., Cameron R.A., Peterson K.J., Schubert M. microRNA complements in deuterostomes: origin and evolution of microRNAs. Evol. Dev. 2011, 13:15-27.
-
(2011)
Evol. Dev.
, vol.13
, pp. 15-27
-
-
Campo-Paysaa, F.1
Semon, M.2
Cameron, R.A.3
Peterson, K.J.4
Schubert, M.5
-
12
-
-
16644362054
-
Rapid microinjection of fertilized eggs
-
Cheers M.S., Ettensohn C.A. Rapid microinjection of fertilized eggs. Methods Cell Biol. 2004, 74:287-310.
-
(2004)
Methods Cell Biol.
, vol.74
, pp. 287-310
-
-
Cheers, M.S.1
Ettensohn, C.A.2
-
13
-
-
77649193420
-
Ancient animal microRNAs and the evolution of tissue identity
-
Christodoulou F., Raible F., Tomer R., Simakov O., Trachana K., Klaus S., Snyman H., Hannon G.J., Bork P., Arendt D. Ancient animal microRNAs and the evolution of tissue identity. Nature 2010, 463:1084-1088.
-
(2010)
Nature
, vol.463
, pp. 1084-1088
-
-
Christodoulou, F.1
Raible, F.2
Tomer, R.3
Simakov, O.4
Trachana, K.5
Klaus, S.6
Snyman, H.7
Hannon, G.J.8
Bork, P.9
Arendt, D.10
-
14
-
-
0036607698
-
A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo
-
Davidson E.H., Rast J.P., Oliveri P., Ransick A., Calestani C., Yuh C.H., Minokawa T., Amore G., Hinman V., Arenas-Mena C., Otim O., Brown C.T., Livi C.B., Lee P.Y., Revilla R., Schilstra M.J., Clarke P.J., Rust A.G., Pan Z., Arnone M.I., Rowen L., Cameron R.A., McClay D.R., Hood L., Bolouri H. A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo. Dev. Biol. 2002, 246:162-190.
-
(2002)
Dev. Biol.
, vol.246
, pp. 162-190
-
-
Davidson, E.H.1
Rast, J.P.2
Oliveri, P.3
Ransick, A.4
Calestani, C.5
Yuh, C.H.6
Minokawa, T.7
Amore, G.8
Hinman, V.9
Arenas-Mena, C.10
Otim, O.11
Brown, C.T.12
Livi, C.B.13
Lee, P.Y.14
Revilla, R.15
Schilstra, M.J.16
Clarke, P.J.17
Rust, A.G.18
Pan, Z.19
Arnone, M.I.20
Rowen, L.21
Cameron, R.A.22
McClay, D.R.23
Hood, L.24
Bolouri, H.25
more..
-
15
-
-
12144288504
-
Nodal and BMP2/4 signaling organizes the oral-aboral axis of the sea urchin embryo
-
Duboc V., Rottinger E., Besnardeau L., Lepage T. Nodal and BMP2/4 signaling organizes the oral-aboral axis of the sea urchin embryo. Dev. Cell 2004, 6:397-410.
-
(2004)
Dev. Cell
, vol.6
, pp. 397-410
-
-
Duboc, V.1
Rottinger, E.2
Besnardeau, L.3
Lepage, T.4
-
17
-
-
11144263726
-
Nodal/activin signaling establishes oral-aboral polarity in the early sea urchin embryo
-
Flowers V.L., Courteau G.R., Poustka A.J., Weng W., Venuti J.M. Nodal/activin signaling establishes oral-aboral polarity in the early sea urchin embryo. Dev. Dyn. 2004, 231:727-740.
-
(2004)
Dev. Dyn.
, vol.231
, pp. 727-740
-
-
Flowers, V.L.1
Courteau, G.R.2
Poustka, A.J.3
Weng, W.4
Venuti, J.M.5
-
18
-
-
41849084855
-
Discovering microRNAs from deep sequencing data using miRDeep
-
Friedländer M.R., Chen W., Adamidi C., Maaskola J., Einspanier R., Knespel S., Rajewsky N. Discovering microRNAs from deep sequencing data using miRDeep. Nat. Biotechnol. 2008, 26:407-415.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 407-415
-
-
Friedländer, M.R.1
Chen, W.2
Adamidi, C.3
Maaskola, J.4
Einspanier, R.5
Knespel, S.6
Rajewsky, N.7
-
19
-
-
81355159096
-
MiRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
-
(2011 Sep 12, Electronic publication ahead of print)
-
Friedländer M.R., Mackowiak S.D., Li N., Chen W., Rajewsky N. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic Acids Res 2011, (2011 Sep 12, Electronic publication ahead of print).
-
(2011)
Nucleic Acids Res
-
-
Friedländer, M.R.1
Mackowiak, S.D.2
Li, N.3
Chen, W.4
Rajewsky, N.5
-
20
-
-
60149095444
-
Most mammalian mRNAs are conserved targets of microRNAs
-
Friedman R.C., Farh K.K., Burge C.B., Bartel D.P. Most mammalian mRNAs are conserved targets of microRNAs. Genome Res. 2009, 19:92-105.
-
(2009)
Genome Res.
, vol.19
, pp. 92-105
-
-
Friedman, R.C.1
Farh, K.K.2
Burge, C.B.3
Bartel, D.P.4
-
21
-
-
4143149753
-
Dicer is essential for formation of the heterochromatin structure in vertebrate cells
-
Fukagawa T., Nogami M., Yoshikawa M., Ikeno M., Okazaki T., Takami Y., Nakayama T., Oshimura M. Dicer is essential for formation of the heterochromatin structure in vertebrate cells. Nat. Cell Biol. 2004, 6:784-791.
-
(2004)
Nat. Cell Biol.
, vol.6
, pp. 784-791
-
-
Fukagawa, T.1
Nogami, M.2
Yoshikawa, M.3
Ikeno, M.4
Okazaki, T.5
Takami, Y.6
Nakayama, T.7
Oshimura, M.8
-
22
-
-
58449134534
-
Small silencing RNAs: an expanding universe
-
Ghildiyal M., Zamore P.D. Small silencing RNAs: an expanding universe. Nat. Rev. Genet. 2009, 10:94-108.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 94-108
-
-
Ghildiyal, M.1
Zamore, P.D.2
-
23
-
-
18244385475
-
MicroRNAs regulate brain morphogenesis in zebrafish
-
Giraldez A.J., Cinalli R.M., Glasner M.E., Enright A.J., Thomson J.M., Baskerville S., Hammond S.M., Bartel D.P., Schier A.F. MicroRNAs regulate brain morphogenesis in zebrafish. Science 2005, 308:833-838.
-
(2005)
Science
, vol.308
, pp. 833-838
-
-
Giraldez, A.J.1
Cinalli, R.M.2
Glasner, M.E.3
Enright, A.J.4
Thomson, J.M.5
Baskerville, S.6
Hammond, S.M.7
Bartel, D.P.8
Schier, A.F.9
-
24
-
-
33745336617
-
A germline-specific class of small RNAs binds mammalian Piwi proteins
-
Girard A., Sachidanandam R., Hannon G.J., Carmell M.A. A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature 2006, 442:199-202.
-
(2006)
Nature
, vol.442
, pp. 199-202
-
-
Girard, A.1
Sachidanandam, R.2
Hannon, G.J.3
Carmell, M.A.4
-
25
-
-
33745621037
-
A novel class of small RNAs in mouse spermatogenic cells
-
Grivna S.T., Beyret E., Wang Z., Lin H. A novel class of small RNAs in mouse spermatogenic cells. Genes Dev. 2006, 20:1709-1714.
-
(2006)
Genes Dev.
, vol.20
, pp. 1709-1714
-
-
Grivna, S.T.1
Beyret, E.2
Wang, Z.3
Lin, H.4
-
26
-
-
33947390781
-
A slicer-mediated mechanism for repeat-associated siRNA 5' end formation in Drosophila
-
Gunawardane L.S., Saito K., Nishida K.M., Miyoshi K., Kawamura Y., Nagami T., Siomi H., Siomi M.C. A slicer-mediated mechanism for repeat-associated siRNA 5' end formation in Drosophila. Science 2007, 315:1587-1590.
-
(2007)
Science
, vol.315
, pp. 1587-1590
-
-
Gunawardane, L.S.1
Saito, K.2
Nishida, K.M.3
Miyoshi, K.4
Kawamura, Y.5
Nagami, T.6
Siomi, H.7
Siomi, M.C.8
-
27
-
-
77955644289
-
Mammalian microRNAs predominantly act to decrease target mRNA levels
-
Guo H., Ingolia N.T., Weissman J.S., Bartel D.P. Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 2010, 466:835-840.
-
(2010)
Nature
, vol.466
, pp. 835-840
-
-
Guo, H.1
Ingolia, N.T.2
Weissman, J.S.3
Bartel, D.P.4
-
28
-
-
33744520104
-
Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex
-
Han J., Lee Y., Yeom K.H., Nam J.W., Heo I., Rhee J.K., Sohn S.Y., Cho Y., Zhang B.T., Kim V.N. Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex. Cell 2006, 125:887-901.
-
(2006)
Cell
, vol.125
, pp. 887-901
-
-
Han, J.1
Lee, Y.2
Yeom, K.H.3
Nam, J.W.4
Heo, I.5
Rhee, J.K.6
Sohn, S.Y.7
Cho, Y.8
Zhang, B.T.9
Kim, V.N.10
-
29
-
-
42949146575
-
MicroRNAs and the advent of vertebrate morphological complexity
-
Heimberg A.M., Sempere L.F., Moy V.N., Donoghue P.C., Peterson K.J. MicroRNAs and the advent of vertebrate morphological complexity. Proc. Natl. Acad. Sci. U. S. A. 2008, 105:2946-2950.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 2946-2950
-
-
Heimberg, A.M.1
Sempere, L.F.2
Moy, V.N.3
Donoghue, P.C.4
Peterson, K.J.5
-
30
-
-
72949115517
-
Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA
-
Hendrickson D.G., Hogan D.J., McCullough H.L., Myers J.W., Herschlag D., Ferrell J.E., Brown P.O. Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA. PLoS Biol. 2009, 7:e1000238.
-
(2009)
PLoS Biol.
, vol.7
-
-
Hendrickson, D.G.1
Hogan, D.J.2
McCullough, H.L.3
Myers, J.W.4
Herschlag, D.5
Ferrell, J.E.6
Brown, P.O.7
-
31
-
-
34047154356
-
A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in Zebrafish
-
Houwing S., Kamminga L.M., Berezikov E., Cronembold D., Girard A., van den Elst H., Filippov D.V., Blaser H., Raz E., Moens C.B., Plasterk R.H., Hannon G.J., Draper B.W., Ketting R.F. A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in Zebrafish. Cell 2007, 129:69-82.
-
(2007)
Cell
, vol.129
, pp. 69-82
-
-
Houwing, S.1
Kamminga, L.M.2
Berezikov, E.3
Cronembold, D.4
Girard, A.5
van den Elst, H.6
Filippov, D.V.7
Blaser, H.8
Raz, E.9
Moens, C.B.10
Plasterk, R.H.11
Hannon, G.J.12
Draper, B.W.13
Ketting, R.F.14
-
32
-
-
34547481559
-
Germ line determinants are not localized early in sea urchin development, but do accumulate in the small micromere lineage
-
Juliano C.E., Voronina E., Stack C., Aldrich M., Cameron A.R., Wessel G.M. Germ line determinants are not localized early in sea urchin development, but do accumulate in the small micromere lineage. Dev. Biol. 2006, 300:406-415.
-
(2006)
Dev. Biol.
, vol.300
, pp. 406-415
-
-
Juliano, C.E.1
Voronina, E.2
Stack, C.3
Aldrich, M.4
Cameron, A.R.5
Wessel, G.M.6
-
33
-
-
72649103901
-
Nanos functions to maintain the fate of the small micromere lineage in the sea urchin embryo
-
Juliano C.E., Yajima M., Wessel G.M. Nanos functions to maintain the fate of the small micromere lineage in the sea urchin embryo. Dev. Biol. 2010, 337:220-232.
-
(2010)
Dev. Biol.
, vol.337
, pp. 220-232
-
-
Juliano, C.E.1
Yajima, M.2
Wessel, G.M.3
-
34
-
-
13844294261
-
Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing
-
Kanellopoulou C., Muljo S.A., Kung A.L., Ganesan S., Drapkin R., Jenuwein T., Livingston D.M., Rajewsky K. Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing. Genes Dev. 2005, 19:489-501.
-
(2005)
Genes Dev.
, vol.19
, pp. 489-501
-
-
Kanellopoulou, C.1
Muljo, S.A.2
Kung, A.L.3
Ganesan, S.4
Drapkin, R.5
Jenuwein, T.6
Livingston, D.M.7
Rajewsky, K.8
-
35
-
-
20944450160
-
Combinatorial microRNA target predictions
-
Krek A., Grun D., Poy M.N., Wolf R., Rosenberg L., Epstein E.J., MacMenamin P., da Piedade I., Gunsalus K.C., Stoffel M., Rajewsky N. Combinatorial microRNA target predictions. Nat. Genet. 2005, 37:495-500.
-
(2005)
Nat. Genet.
, vol.37
, pp. 495-500
-
-
Krek, A.1
Grun, D.2
Poy, M.N.3
Wolf, R.4
Rosenberg, L.5
Epstein, E.J.6
MacMenamin, P.7
da Piedade, I.8
Gunsalus, K.C.9
Stoffel, M.10
Rajewsky, N.11
-
36
-
-
0035955374
-
Identification of novel genes coding for small expressed RNAs
-
Lagos-Quintana M., Rauhut R., Lendeckel W., Tuschl T. Identification of novel genes coding for small expressed RNAs. Science 2001, 294:853-858.
-
(2001)
Science
, vol.294
, pp. 853-858
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Lendeckel, W.3
Tuschl, T.4
-
37
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B., Trapnell C., Pop M., Salzberg S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009, 10:R25.
-
(2009)
Genome Biol.
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
38
-
-
34248638447
-
Evolutionary conservation of microRNA regulatory circuits: an examination of microRNA gene complexity and conserved microRNA-target interactions through metazoan phylogeny
-
Lee C.T., Risom T., Strauss W.M. Evolutionary conservation of microRNA regulatory circuits: an examination of microRNA gene complexity and conserved microRNA-target interactions through metazoan phylogeny. DNA Cell Biol. 2007, 26:209-218.
-
(2007)
DNA Cell Biol.
, vol.26
, pp. 209-218
-
-
Lee, C.T.1
Risom, T.2
Strauss, W.M.3
-
39
-
-
0141843656
-
The nuclear RNase III Drosha initiates microRNA processing
-
Lee Y., Ahn C., Han J., Choi H., Kim J., Yim J., Lee J., Provost P., Radmark O., Kim S., Kim V.N. The nuclear RNase III Drosha initiates microRNA processing. Nature 2003, 425:415-419.
-
(2003)
Nature
, vol.425
, pp. 415-419
-
-
Lee, Y.1
Ahn, C.2
Han, J.3
Choi, H.4
Kim, J.5
Yim, J.6
Lee, J.7
Provost, P.8
Radmark, O.9
Kim, S.10
Kim, V.N.11
-
40
-
-
33744758705
-
Synaptotagmin I is involved in the regulation of cortical granule exocytosis in the sea urchin
-
Leguia M., Conner S., Berg L., Wessel G.M. Synaptotagmin I is involved in the regulation of cortical granule exocytosis in the sea urchin. Mol. Reprod. Dev. 2006, 73:895-905.
-
(2006)
Mol. Reprod. Dev.
, vol.73
, pp. 895-905
-
-
Leguia, M.1
Conner, S.2
Berg, L.3
Wessel, G.M.4
-
41
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis B.P., Burge C.B., Bartel D.P. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005, 120:15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
42
-
-
0032914194
-
Nuclear beta-catenin is required to specify vegetal cell fates in the sea urchin embryo
-
Logan C.Y., Miller J.R., Ferkowicz M.J., McClay D.R. Nuclear beta-catenin is required to specify vegetal cell fates in the sea urchin embryo. Development 1999, 126:345-357.
-
(1999)
Development
, vol.126
, pp. 345-357
-
-
Logan, C.Y.1
Miller, J.R.2
Ferkowicz, M.J.3
McClay, D.R.4
-
43
-
-
73249140193
-
Deadenylation of maternal mRNAs mediated by miR-427 in Xenopus laevis embryos
-
Lund E., Liu M., Hartley R.S., Sheets M.D., Dahlberg J.E. Deadenylation of maternal mRNAs mediated by miR-427 in Xenopus laevis embryos. RNA 2009, 15:2351-2363.
-
(2009)
RNA
, vol.15
, pp. 2351-2363
-
-
Lund, E.1
Liu, M.2
Hartley, R.S.3
Sheets, M.D.4
Dahlberg, J.E.5
-
44
-
-
68749113985
-
Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells
-
Mayr C., Bartel D.P. Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells. Cell 2009, 138:673-684.
-
(2009)
Cell
, vol.138
, pp. 673-684
-
-
Mayr, C.1
Bartel, D.P.2
-
45
-
-
77951195672
-
Caspase-dependent conversion of Dicer ribonuclease into a death-promoting deoxyribonuclease
-
Nakagawa A., Shi Y., Kage-Nakadai E., Mitani S., Xue D. Caspase-dependent conversion of Dicer ribonuclease into a death-promoting deoxyribonuclease. Science 2010, 328:327-334.
-
(2010)
Science
, vol.328
, pp. 327-334
-
-
Nakagawa, A.1
Shi, Y.2
Kage-Nakadai, E.3
Mitani, S.4
Xue, D.5
-
46
-
-
34147147595
-
The evolution of animal microRNA function
-
Niwa R., Slack F.J. The evolution of animal microRNA function. Curr. Opin. Genet. Dev. 2007, 17:145-150.
-
(2007)
Curr. Opin. Genet. Dev.
, vol.17
, pp. 145-150
-
-
Niwa, R.1
Slack, F.J.2
-
47
-
-
77954506062
-
Dicer is required for the normal development of sea urchin, Hemicentrotus pulcherrimus
-
Okamitsu Y., Yamamoto T., Fujii T., Ochiai H., Sakamoto N. Dicer is required for the normal development of sea urchin, Hemicentrotus pulcherrimus. Zoolog. Sci. 2010, 27:477-486.
-
(2010)
Zoolog. Sci.
, vol.27
, pp. 477-486
-
-
Okamitsu, Y.1
Yamamoto, T.2
Fujii, T.3
Ochiai, H.4
Sakamoto, N.5
-
48
-
-
0036607107
-
A regulatory gene network that directs micromere specification in the sea urchin embryo
-
Oliveri P., Carrick D.M., Davidson E.H. A regulatory gene network that directs micromere specification in the sea urchin embryo. Dev. Biol. 2002, 246:209-228.
-
(2002)
Dev. Biol.
, vol.246
, pp. 209-228
-
-
Oliveri, P.1
Carrick, D.M.2
Davidson, E.H.3
-
49
-
-
3142630279
-
Gene regulatory network controlling embryonic specification in the sea urchin
-
Oliveri P., Davidson E.H. Gene regulatory network controlling embryonic specification in the sea urchin. Curr. Opin. Genet. Dev. 2004, 14:351-360.
-
(2004)
Curr. Opin. Genet. Dev.
, vol.14
, pp. 351-360
-
-
Oliveri, P.1
Davidson, E.H.2
-
50
-
-
0038022709
-
Activation of pmar1 controls specification of micromeres in the sea urchin embryo
-
Oliveri P., Davidson E.H., McClay D.R. Activation of pmar1 controls specification of micromeres in the sea urchin embryo. Dev. Biol. 2003, 258:32-43.
-
(2003)
Dev. Biol.
, vol.258
, pp. 32-43
-
-
Oliveri, P.1
Davidson, E.H.2
McClay, D.R.3
-
51
-
-
78751474118
-
Non-coding RNAs as regulators of embryogenesis
-
Pauli A., Rinn J.L., Schier A.F. Non-coding RNAs as regulators of embryogenesis. Nat. Rev. Genet. 2011, 12:136-149.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 136-149
-
-
Pauli, A.1
Rinn, J.L.2
Schier, A.F.3
-
52
-
-
70349652191
-
The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs
-
Persson H., Kvist A., Vallon-Christersson J., Medstrand P., Borg A., Rovira C. The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs. Nat. Cell Biol. 2009, 11:1268-1271.
-
(2009)
Nat. Cell Biol.
, vol.11
, pp. 1268-1271
-
-
Persson, H.1
Kvist, A.2
Vallon-Christersson, J.3
Medstrand, P.4
Borg, A.5
Rovira, C.6
-
53
-
-
79959853681
-
A gene regulatory network controlling the embryonic specification of endoderm
-
Peter I.S., Davidson E.H. A gene regulatory network controlling the embryonic specification of endoderm. Nature 2011, 474:635-639.
-
(2011)
Nature
, vol.474
, pp. 635-639
-
-
Peter, I.S.1
Davidson, E.H.2
-
54
-
-
70349320089
-
MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion
-
Peterson K.J., Dietrich M.R., McPeek M.A. MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion. Bioessays 2009, 31:736-747.
-
(2009)
Bioessays
, vol.31
, pp. 736-747
-
-
Peterson, K.J.1
Dietrich, M.R.2
McPeek, M.A.3
-
55
-
-
33745248430
-
MicroRNA target predictions in animals
-
Rajewsky N. microRNA target predictions in animals. Nat. Genet. 2006, 38(Suppl):S8-13.
-
(2006)
Nat. Genet.
, vol.38
, Issue.SUPPL.
-
-
Rajewsky, N.1
-
56
-
-
79955619856
-
MicroRNAs and the Operon paper
-
Rajewsky N. MicroRNAs and the Operon paper. J. Mol. Biol. 2011, 409:70-75.
-
(2011)
J. Mol. Biol.
, vol.409
, pp. 70-75
-
-
Rajewsky, N.1
-
57
-
-
33748467781
-
Cis-regulatory processing of Notch signaling input to the sea urchin glial cells missing gene during mesoderm specification
-
Ransick A., Davidson E.H. cis-regulatory processing of Notch signaling input to the sea urchin glial cells missing gene during mesoderm specification. Dev. Biol. 2006, 297:587-602.
-
(2006)
Dev. Biol.
, vol.297
, pp. 587-602
-
-
Ransick, A.1
Davidson, E.H.2
-
58
-
-
34547624884
-
A missing link in the sea urchin embryo gene regulatory network: hesC and the double-negative specification of micromeres
-
Revilla-i-Domingo R., Oliveri P., Davidson E.H. A missing link in the sea urchin embryo gene regulatory network: hesC and the double-negative specification of micromeres. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:12383-12388.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 12383-12388
-
-
Revilla-i-Domingo, R.1
Oliveri, P.2
Davidson, E.H.3
-
59
-
-
17844389337
-
Seawi-a sea urchin piwi/argonaute family member is a component of MT-RNP complexes
-
Rodriguez A.J., Seipel S.A., Hamill D.R., Romancino D.P., M D.I.C., Suprenant K.A., Bonder E.M. Seawi-a sea urchin piwi/argonaute family member is a component of MT-RNP complexes. RNA 2005, 11:646-656.
-
(2005)
RNA
, vol.11
, pp. 646-656
-
-
Rodriguez, A.J.1
Seipel, S.A.2
Hamill, D.R.3
Romancino, D.P.4
M, D.I.C.5
Suprenant, K.A.6
Bonder, E.M.7
-
60
-
-
78049387387
-
Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo
-
Rouget C., Papin C., Boureux A., Meunier A.C., Franco B., Robine N., Lai E.C., Pelisson A., Simonelig M. Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo. Nature 2010, 467:1128-1132.
-
(2010)
Nature
, vol.467
, pp. 1128-1132
-
-
Rouget, C.1
Papin, C.2
Boureux, A.3
Meunier, A.C.4
Franco, B.5
Robine, N.6
Lai, E.C.7
Pelisson, A.8
Simonelig, M.9
-
61
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Rozen S., Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 2000, 132:365-386.
-
(2000)
Methods Mol. Biol.
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
62
-
-
33747369856
-
Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome
-
Saito K., Nishida K.M., Mori T., Kawamura Y., Miyoshi K., Nagami T., Siomi H., Siomi M.C. Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome. Genes Dev. 2006, 20:2214-2222.
-
(2006)
Genes Dev.
, vol.20
, pp. 2214-2222
-
-
Saito, K.1
Nishida, K.M.2
Mori, T.3
Kawamura, Y.4
Miyoshi, K.5
Nagami, T.6
Siomi, H.7
Siomi, M.C.8
-
63
-
-
33751011601
-
The transcriptome of the sea urchin embryo
-
Samanta M.P., Tongprasit W., Istrail S., Cameron R.A., Tu Q., Davidson E.H., Stolc V. The transcriptome of the sea urchin embryo. Science 2006, 314:960-962.
-
(2006)
Science
, vol.314
, pp. 960-962
-
-
Samanta, M.P.1
Tongprasit, W.2
Istrail, S.3
Cameron, R.A.4
Tu, Q.5
Davidson, E.H.6
Stolc, V.7
-
64
-
-
49949117302
-
Widespread changes in protein synthesis induced by microRNAs
-
Selbach M., Schwanhausser B., Thierfelder N., Fang Z., Khanin R., Rajewsky N. Widespread changes in protein synthesis induced by microRNAs. Nature 2008, 455:58-63.
-
(2008)
Nature
, vol.455
, pp. 58-63
-
-
Selbach, M.1
Schwanhausser, B.2
Thierfelder, N.3
Fang, Z.4
Khanin, R.5
Rajewsky, N.6
-
65
-
-
33845608152
-
The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint
-
Sempere L.F., Cole C.N., McPeek M.A., Peterson K.J. The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint. J. Exp. Zool. B Mol. Dev. Evol. 2006, 306:575-588.
-
(2006)
J. Exp. Zool. B Mol. Dev. Evol.
, vol.306
, pp. 575-588
-
-
Sempere, L.F.1
Cole, C.N.2
McPeek, M.A.3
Peterson, K.J.4
-
66
-
-
0032934519
-
LvNotch signaling mediates secondary mesenchyme specification in the sea urchin embryo
-
Sherwood D.R., McClay D.R. LvNotch signaling mediates secondary mesenchyme specification in the sea urchin embryo. Development 1999, 126:1703-1713.
-
(1999)
Development
, vol.126
, pp. 1703-1713
-
-
Sherwood, D.R.1
McClay, D.R.2
-
67
-
-
28944439309
-
Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution
-
Stark A., Brennecke J., Bushati N., Russell R.B., Cohen S.M. Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution. Cell 2005, 123:1133-1146.
-
(2005)
Cell
, vol.123
, pp. 1133-1146
-
-
Stark, A.1
Brennecke, J.2
Bushati, N.3
Russell, R.B.4
Cohen, S.M.5
-
68
-
-
38149026919
-
A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands
-
Stark A., Bushati N., Jan C.H., Kheradpour P., Hodges E., Brennecke J., Bartel D.P., Cohen S.M., Kellis M. A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands. Genes Dev. 2008, 22:8-13.
-
(2008)
Genes Dev.
, vol.22
, pp. 8-13
-
-
Stark, A.1
Bushati, N.2
Jan, C.H.3
Kheradpour, P.4
Hodges, E.5
Brennecke, J.6
Bartel, D.P.7
Cohen, S.M.8
Kellis, M.9
-
69
-
-
70349631870
-
Large-scale sorting of C. elegans embryos reveals the dynamics of small RNA expression
-
Stoeckius M., Maaskola J., Colombo T., Rahn H.P., Friedlander M.R., Li N., Chen W., Piano F., Rajewsky N. Large-scale sorting of C. elegans embryos reveals the dynamics of small RNA expression. Nat. Methods 2009, 6:745-751.
-
(2009)
Nat. Methods
, vol.6
, pp. 745-751
-
-
Stoeckius, M.1
Maaskola, J.2
Colombo, T.3
Rahn, H.P.4
Friedlander, M.R.5
Li, N.6
Chen, W.7
Piano, F.8
Rajewsky, N.9
-
70
-
-
0036333533
-
LvDelta is a mesoderm-inducing signal in the sea urchin embryo and can endow blastomeres with organizer-like properties
-
Sweet H.C., Gehring M., Ettensohn C.A. LvDelta is a mesoderm-inducing signal in the sea urchin embryo and can endow blastomeres with organizer-like properties. Development 2002, 129:1945-1955.
-
(2002)
Development
, vol.129
, pp. 1945-1955
-
-
Sweet, H.C.1
Gehring, M.2
Ettensohn, C.A.3
-
71
-
-
0033377612
-
The role of micromere signaling in Notch activation and mesoderm specification during sea urchin embryogenesis
-
Sweet H.C., Hodor P.G., Ettensohn C.A. The role of micromere signaling in Notch activation and mesoderm specification during sea urchin embryogenesis. Development 1999, 126:5255-5265.
-
(1999)
Development
, vol.126
, pp. 5255-5265
-
-
Sweet, H.C.1
Hodor, P.G.2
Ettensohn, C.A.3
-
72
-
-
38149022486
-
Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci
-
Tyler D.M., Okamura K., Chung W.J., Hagen J.W., Berezikov E., Hannon G.J., Lai E.C. Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci. Genes Dev. 2008, 22:26-36.
-
(2008)
Genes Dev.
, vol.22
, pp. 26-36
-
-
Tyler, D.M.1
Okamura, K.2
Chung, W.J.3
Hagen, J.W.4
Berezikov, E.5
Hannon, G.J.6
Lai, E.C.7
-
73
-
-
33746502166
-
A distinct small RNA pathway silences selfish genetic elements in the germline
-
Vagin V.V., Sigova A., Li C., Seitz H., Gvozdev V., Zamore P.D. A distinct small RNA pathway silences selfish genetic elements in the germline. Science 2006, 313:320-324.
-
(2006)
Science
, vol.313
, pp. 320-324
-
-
Vagin, V.V.1
Sigova, A.2
Li, C.3
Seitz, H.4
Gvozdev, V.5
Zamore, P.D.6
-
74
-
-
33745599586
-
Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
-
Watanabe T., Takeda A., Tsukiyama T., Mise K., Okuno T., Sasaki H., Minami N., Imai H. Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes. Genes Dev. 2006, 20:1732-1743.
-
(2006)
Genes Dev.
, vol.20
, pp. 1732-1743
-
-
Watanabe, T.1
Takeda, A.2
Tsukiyama, T.3
Mise, K.4
Okuno, T.5
Sasaki, H.6
Minami, N.7
Imai, H.8
-
75
-
-
0022353920
-
Sequential expression of germ-layer specific molecules in the sea urchin embryo
-
Wessel G.M., McClay D.R. Sequential expression of germ-layer specific molecules in the sea urchin embryo. Dev. Biol. 1985, 111:451-463.
-
(1985)
Dev. Biol.
, vol.111
, pp. 451-463
-
-
Wessel, G.M.1
McClay, D.R.2
-
76
-
-
58549086017
-
The deep evolution of metazoan microRNAs
-
Wheeler B.M., Heimberg A.M., Moy V.N., Sperling E.A., Holstein T.W., Heber S., Peterson K.J. The deep evolution of metazoan microRNAs. Evol. Dev. 2009, 11:50-68.
-
(2009)
Evol. Dev.
, vol.11
, pp. 50-68
-
-
Wheeler, B.M.1
Heimberg, A.M.2
Moy, V.N.3
Sperling, E.A.4
Holstein, T.W.5
Heber, S.6
Peterson, K.J.7
-
77
-
-
22044458072
-
MicroRNA expression in zebrafish embryonic development
-
Wienholds E., Kloosterman W.P., Miska E., Alvarez-Saavedra E., Berezikov E., de Bruijn E., Horvitz H.R., Kauppinen S., Plasterk R.H. MicroRNA expression in zebrafish embryonic development. Science 2005, 309:310-311.
-
(2005)
Science
, vol.309
, pp. 310-311
-
-
Wienholds, E.1
Kloosterman, W.P.2
Miska, E.3
Alvarez-Saavedra, E.4
Berezikov, E.5
de Bruijn, E.6
Horvitz, H.R.7
Kauppinen, S.8
Plasterk, R.H.9
-
78
-
-
26944495173
-
MicroRNA function in animal development
-
Wienholds E., Plasterk R.H. MicroRNA function in animal development. FEBS Lett. 2005, 579:5911-5922.
-
(2005)
FEBS Lett.
, vol.579
, pp. 5911-5922
-
-
Wienholds, E.1
Plasterk, R.H.2
-
79
-
-
4043087613
-
Nuclear beta-catenin-dependent Wnt8 signaling in vegetal cells of the early sea urchin embryo regulates gastrulation and differentiation of endoderm and mesodermal cell lineages
-
Wikramanayake A.H., Peterson R., Chen J., Huang L., Bince J.M., McClay D.R., Klein W.H. Nuclear beta-catenin-dependent Wnt8 signaling in vegetal cells of the early sea urchin embryo regulates gastrulation and differentiation of endoderm and mesodermal cell lineages. Genesis 2004, 39:194-205.
-
(2004)
Genesis
, vol.39
, pp. 194-205
-
-
Wikramanayake, A.H.1
Peterson, R.2
Chen, J.3
Huang, L.4
Bince, J.M.5
McClay, D.R.6
Klein, W.H.7
-
80
-
-
15244358503
-
Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
-
Xie X., Lu J., Kulbokas E.J., Golub T.R., Mootha V., Lindblad-Toh K., Lander E.S., Kellis M. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 2005, 434:338-345.
-
(2005)
Nature
, vol.434
, pp. 338-345
-
-
Xie, X.1
Lu, J.2
Kulbokas, E.J.3
Golub, T.R.4
Mootha, V.5
Lindblad-Toh, K.6
Lander, E.S.7
Kellis, M.8
-
81
-
-
0036845374
-
Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP
-
Zhang H., Kolb F.A., Brondani V., Billy E., Filipowicz W. Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP. EMBO J. 2002, 21:5875-5885.
-
(2002)
EMBO J.
, vol.21
, pp. 5875-5885
-
-
Zhang, H.1
Kolb, F.A.2
Brondani, V.3
Billy, E.4
Filipowicz, W.5
|