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Volumn 1, Issue 2, 2009, Pages 237-246

Experimentally based sea urchin gene regulatory network and the causal explanation of developmental phenomenology

Author keywords

[No Author keywords available]

Indexed keywords

ASTEROIDEA; ECHINOIDEA;

EID: 77955281697     PISSN: 19395094     EISSN: 1939005X     Source Type: Journal    
DOI: 10.1002/wsbm.24     Document Type: Article
Times cited : (23)

References (40)
  • 1
    • 85013830483 scopus 로고    scopus 로고
    • The regulatory genome. Gene Regulatory Networks in Development and Evolution
    • San-Diego: Academic Press
    • Davidson, EH. The regulatory genome. Gene Regulatory Networks in Development and Evolution. San-Diego: Academic Press; 2006.
    • (2006)
    • Davidson, E.H.1
  • 2
    • 34748881464 scopus 로고    scopus 로고
    • The regulatory genome and the computer
    • Istrail S, De-Leon SB, Davidson EH. The regulatory genome and the computer. Dev Biol 2007, 310(2):187-195.
    • (2007) Dev Biol , vol.310 , Issue.2 , pp. 187-195
    • Istrail, S.1    De-Leon, S.B.2    Davidson, E.H.3
  • 3
    • 0035094449 scopus 로고    scopus 로고
    • Cis-regulatory logic in the endo16 gene: switching from a specification to a differentiation mode of control
    • Yuh CH, Bolouri H, Davidson EH. Cis-regulatory logic in the endo16 gene: switching from a specification to a differentiation mode of control. Development 2001, 128(5):617-629.
    • (2001) Development , vol.128 , Issue.5 , pp. 617-629
    • Yuh, C.H.1    Bolouri, H.2    Davidson, E.H.3
  • 4
    • 0032549745 scopus 로고    scopus 로고
    • Genomic cisregulatory logic: experimental and computational analysis of a sea urchin gene
    • Yuh CH, Bolouri H, Davidson EH. Genomic cisregulatory logic: experimental and computational analysis of a sea urchin gene. Science 1998, 279(5358):1896-1902.
    • (1998) Science , vol.279 , Issue.5358 , pp. 1896-1902
    • Yuh, C.H.1    Bolouri, H.2    Davidson, E.H.3
  • 5
    • 42049091628 scopus 로고    scopus 로고
    • A protocol describing the principles of cisregulatory analysis in the sea urchin
    • Smith J. A protocol describing the principles of cisregulatory analysis in the sea urchin. Nat Protoc 2008, 3(4):710-718.
    • (2008) Nat Protoc , vol.3 , Issue.4 , pp. 710-718
    • Smith, J.1
  • 6
    • 58749089450 scopus 로고    scopus 로고
    • A protocol for unraveling gene regulatory networks
    • Materna SC, Oliveri P. A protocol for unraveling gene regulatory networks. Nat Protoc 2008, 3(12):1876-1887.
    • (2008) Nat Protoc , vol.3 , Issue.12 , pp. 1876-1887
    • Materna, S.C.1    Oliveri, P.2
  • 7
    • 43149086112 scopus 로고    scopus 로고
    • Global regulatory logic for specification of an embryonic cell lineage
    • Oliveri P, Tu Q, Davidson EH. Global regulatory logic for specification of an embryonic cell lineage. Proc Natl Acad Sci U S A 2008, 105(16):5955-5962.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , Issue.16 , pp. 5955-5962
    • Oliveri, P.1    Tu, Q.2    Davidson, E.H.3
  • 8
    • 37849021508 scopus 로고    scopus 로고
    • A spatially dynamic cohort of regulatory genes in the endomesodermal gene network of the sea urchin embryo
    • Smith J, Kraemer E, Liu H, Theodoris C, Davidson E. A spatially dynamic cohort of regulatory genes in the endomesodermal gene network of the sea urchin embryo. Dev Biol 2008, 313(2):863-875.
    • (2008) Dev Biol , vol.313 , Issue.2 , pp. 863-875
    • Smith, J.1    Kraemer, E.2    Liu, H.3    Theodoris, C.4    Davidson, E.5
  • 10
    • 58149490721 scopus 로고    scopus 로고
    • Gene regulatory network subcircuit controlling a dynamic spatial pattern of signaling in the sea urchin embryo
    • Smith J, Davidson EH. Gene regulatory network subcircuit controlling a dynamic spatial pattern of signaling in the sea urchin embryo. Proc Natl Acad Sci U S A 2008, 105(51):20089-20094.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , Issue.51 , pp. 20089-20094
    • Smith, J.1    Davidson, E.H.2
  • 11
    • 38449100969 scopus 로고    scopus 로고
    • A gene regulatory network subcircuit drives a dynamic pattern of gene expression
    • Smith J, Theodoris C, Davidson EH. A gene regulatory network subcircuit drives a dynamic pattern of gene expression. Science 2007, 318(5851):794-797.
    • (2007) Science , vol.318 , Issue.5851 , pp. 794-797
    • Smith, J.1    Theodoris, C.2    Davidson, E.H.3
  • 12
    • 34547634659 scopus 로고    scopus 로고
    • High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution
    • Howard-Ashby M, Materna SC, Brown CT, Tu Q, Oliveri P, et al. High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution. Dev Biol 2006, 300(1):27-34.
    • (2006) Dev Biol , vol.300 , Issue.1 , pp. 27-34
    • Howard-Ashby, M.1    Materna, S.C.2    Brown, C.T.3    Tu, Q.4    Oliveri, P.5
  • 14
    • 33751512628 scopus 로고    scopus 로고
    • Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development
    • Howard-Ashby M, Materna SC, Brown CT, Chen L, Cameron RA, et al. Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development. Dev Biol 2006, 300(1):74-89.
    • (2006) Dev Biol , vol.300 , Issue.1 , pp. 74-89
    • Howard-Ashby, M.1    Materna, S.C.2    Brown, C.T.3    Chen, L.4    Cameron, R.A.5
  • 15
    • 33751550431 scopus 로고    scopus 로고
    • Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus
    • Howard-Ashby M, Materna SC, Brown CT, Chen L, Cameron RA, et al. Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus. Dev Biol 2006, 300(1):90-107.
    • (2006) Dev Biol , vol.300 , Issue.1 , pp. 90-107
    • Howard-Ashby, M.1    Materna, S.C.2    Brown, C.T.3    Chen, L.4    Cameron, R.A.5
  • 16
    • 33751520928 scopus 로고    scopus 로고
    • The C2H2 zinc finger genes of Strongylocentrotus purpuratus and their expression in embryonic development
    • Materna SC, Howard-Ashby M, Gray RF, Davidson EH. The C2H2 zinc finger genes of Strongylocentrotus purpuratus and their expression in embryonic development. Dev Biol 2006, 300(1):108-120.
    • (2006) Dev Biol , vol.300 , Issue.1 , pp. 108-120
    • Materna, S.C.1    Howard-Ashby, M.2    Gray, R.F.3    Davidson, E.H.4
  • 17
    • 33751507966 scopus 로고    scopus 로고
    • Sea urchin Forkhead gene family: phylogeny and embryonic expression
    • Tu Q, Brown CT, Davidson EH, Oliveri P. Sea urchin Forkhead gene family: phylogeny and embryonic expression. Dev Biol 2006, 300(1):49-62.
    • (2006) Dev Biol , vol.300 , Issue.1 , pp. 49-62
    • Tu, Q.1    Brown, C.T.2    Davidson, E.H.3    Oliveri, P.4
  • 18
    • 33646189382 scopus 로고    scopus 로고
    • cis-Regulatory control of cyclophilin, a member of the ETS-DRI skeletogenic gene battery in the sea urchin embryo
    • Amore G, Davidson EH. cis-Regulatory control of cyclophilin, a member of the ETS-DRI skeletogenic gene battery in the sea urchin embryo. Dev Biol 2006, 293(2):555-564.
    • (2006) Dev Biol , vol.293 , Issue.2 , pp. 555-564
    • Amore, G.1    Davidson, E.H.2
  • 19
    • 33751514939 scopus 로고    scopus 로고
    • Repression of mesodermal fate by foxa, a key endoderm regulator of the sea urchin embryo
    • Oliveri P, Walton KD, Davidson EH, McClay DR. Repression of mesodermal fate by foxa, a key endoderm regulator of the sea urchin embryo. Development 2006, 133(21):4173-4181.
    • (2006) Development , vol.133 , Issue.21 , pp. 4173-4181
    • Oliveri, P.1    Walton, K.D.2    Davidson, E.H.3    McClay, D.R.4
  • 20
    • 1942521329 scopus 로고    scopus 로고
    • An otx cis-regulatory module: a key node in the sea urchin endomesoderm gene regulatory network
    • Yuh CH, Dorman ER, Howard ML, Davidson EH. An otx cis-regulatory module: a key node in the sea urchin endomesoderm gene regulatory network. Dev Biol 2004, 269(2):536-551.
    • (2004) Dev Biol , vol.269 , Issue.2 , pp. 536-551
    • Yuh, C.H.1    Dorman, E.R.2    Howard, M.L.3    Davidson, E.H.4
  • 21
    • 37649014659 scopus 로고    scopus 로고
    • Evolutionary plasticity of developmental gene regulatory network architecture
    • Hinman VF, Davidson EH. Evolutionary plasticity of developmental gene regulatory network architecture. ProcNatl Acad SciUS A 2007, 104(49):19404-19409.
    • (2007) ProcNatl Acad SciUS A , vol.104 , Issue.49 , pp. 19404-19409
    • Hinman, V.F.1    Davidson, E.H.2
  • 22
    • 36549025847 scopus 로고    scopus 로고
    • Caught in the evolutionary act: precise cis-regulatory basis of difference in the organization of gene networks of sea stars and sea urchins
    • Hinman VF, Nguyen A, Davidson EH. Caught in the evolutionary act: precise cis-regulatory basis of difference in the organization of gene networks of sea stars and sea urchins. Dev Biol 2007, 312(2):584-595.
    • (2007) Dev Biol , vol.312 , Issue.2 , pp. 584-595
    • Hinman, V.F.1    Nguyen, A.2    Davidson, E.H.3
  • 23
    • 0344824373 scopus 로고    scopus 로고
    • Developmental gene regulatory network architecture across 500 million years of echinoderm evolution
    • Hinman VF, Nguyen AT, Cameron RA, Davidson EH. Developmental gene regulatory network architecture across 500 million years of echinoderm evolution. Proc Natl Acad Sci U S A 2003, 100(23):13356-13361.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , Issue.23 , pp. 13356-13361
    • Hinman, V.F.1    Nguyen, A.T.2    Cameron, R.A.3    Davidson, E.H.4
  • 24
    • 53449089514 scopus 로고    scopus 로고
    • The vertebrate segmentation clock: the tip of the iceberg
    • Ozbudak EM, Pourquie O. The vertebrate segmentation clock: the tip of the iceberg. Curr Opin Genet Dev 2008, 18(4):317-323.
    • (2008) Curr Opin Genet Dev , vol.18 , Issue.4 , pp. 317-323
    • Ozbudak, E.M.1    Pourquie, O.2
  • 25
    • 33845444174 scopus 로고    scopus 로고
    • A complex oscillating network of signaling genes underlies the mouse segmentation clock
    • Dequeant ML, Glynn E, Gaudenz K, Wahl M, Chen J, et al. A complex oscillating network of signaling genes underlies the mouse segmentation clock. Science 2006, 314(5805):1595-1598.
    • (2006) Science , vol.314 , Issue.5805 , pp. 1595-1598
    • Dequeant, M.L.1    Glynn, E.2    Gaudenz, K.3    Wahl, M.4    Chen, J.5
  • 26
    • 34250203551 scopus 로고    scopus 로고
    • Negotiation of the T lineage fate decision by transcription-factor interplay and microenvironmental signals
    • Rothenberg EV. Negotiation of the T lineage fate decision by transcription-factor interplay and microenvironmental signals. Immunity 2007, 26(6):690-702.
    • (2007) Immunity , vol.26 , Issue.6 , pp. 690-702
    • Rothenberg, E.V.1
  • 27
    • 41649105534 scopus 로고    scopus 로고
    • Wnt/Notch signalling and information processing during development
    • Hayward P, Kalmar T, AriasAM.Wnt/Notch signalling and information processing during development. Development 2008, 135(3):411-424.
    • (2008) Development , vol.135 , Issue.3 , pp. 411-424
    • Hayward, P.1    Kalmar, T.2    Arias, A.M.3
  • 28
    • 29044443236 scopus 로고    scopus 로고
    • cis-Regulatory inputs of the wnt8 gene in the sea urchin endomesoderm network
    • Minokawa T, Wikramanayake AH, Davidson EH. cis-Regulatory inputs of the wnt8 gene in the sea urchin endomesoderm network. Dev Biol 2005, 288(2):545-558.
    • (2005) Dev Biol , vol.288 , Issue.2 , pp. 545-558
    • Minokawa, T.1    Wikramanayake, A.H.2    Davidson, E.H.3
  • 29
    • 3142626011 scopus 로고    scopus 로고
    • Differential stability of betacatenin along the animal-vegetal axis of the sea urchin embryo mediated by dishevelled
    • Weitzel HE, Illies MR, Byrum CA, Xu R, Wikramanayake AH, et al. Differential stability of betacatenin along the animal-vegetal axis of the sea urchin embryo mediated by dishevelled. Development 2004, 131(12):2947-2956.
    • (2004) Development , vol.131 , Issue.12 , pp. 2947-2956
    • Weitzel, H.E.1    Illies, M.R.2    Byrum, C.A.3    Xu, R.4    Wikramanayake, A.H.5
  • 30
    • 0032914194 scopus 로고    scopus 로고
    • Nuclear beta-catenin is required to specify vegetal cell fates in the sea urchin embryo
    • Logan CY, Miller JR, Ferkowicz MJ, McClay DR. Nuclear beta-catenin is required to specify vegetal cell fates in the sea urchin embryo. Development 1999, 126(2):345-357.
    • (1999) Development , vol.126 , Issue.2 , pp. 345-357
    • Logan, C.Y.1    Miller, J.R.2    Ferkowicz, M.J.3    McClay, D.R.4
  • 32
    • 0038022709 scopus 로고    scopus 로고
    • Activation of pmar1 controls specification of micromeres in the sea urchin embryo
    • Oliveri P, Davidson EH, McClay DR. Activation of pmar1 controls specification of micromeres in the sea urchin embryo. Dev Biol 2003, 258(1):32-43.
    • (2003) Dev Biol , vol.258 , Issue.1 , pp. 32-43
    • Oliveri, P.1    Davidson, E.H.2    McClay, D.R.3
  • 33
    • 58149120776 scopus 로고    scopus 로고
    • Modeling the dynamics of gene regulatory networks for animal development
    • Ben-Tabou de-Leon S, Davidson EH. Modeling the dynamics of gene regulatory networks for animal development. Dev Biol 2009, 325(2):317-328.
    • (2009) Dev Biol , vol.325 , Issue.2 , pp. 317-328
    • Ben-Tabou de-Leon, S.1    Davidson, E.H.2
  • 34
    • 33748467781 scopus 로고    scopus 로고
    • cis-regulatory processing of Notch signaling input to the sea urchin glial cells missing gene duringmesoderm specification
    • Ransick A, Davidson EH. cis-regulatory processing of Notch signaling input to the sea urchin glial cells missing gene duringmesoderm specification. Dev Biol 2006, 297(2):587-602.
    • (2006) Dev Biol , vol.297 , Issue.2 , pp. 587-602
    • Ransick, A.1    Davidson, E.H.2
  • 35
    • 0142026145 scopus 로고    scopus 로고
    • Expression and function of a starfish Otx ortholog, AmOtx: a conserved role for Otx proteins in endoderm development that predates divergence of the eleutherozoa
    • Hinman VF, Nguyen AT, Davidson EH. Expression and function of a starfish Otx ortholog, AmOtx: a conserved role for Otx proteins in endoderm development that predates divergence of the eleutherozoa. Mech Dev 2003, 120(10):1165-1176.
    • (2003) Mech Dev , vol.120 , Issue.10 , pp. 1165-1176
    • Hinman, V.F.1    Nguyen, A.T.2    Davidson, E.H.3
  • 36
    • 43149126104 scopus 로고    scopus 로고
    • Transfer of a large gene regulatory apparatus to a new developmental address in echinoid evolution
    • Gao F, Davidson EH. Transfer of a large gene regulatory apparatus to a new developmental address in echinoid evolution. Proc Natl Acad Sci U S A 2008, 105(16):6091-6096.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , Issue.16 , pp. 6091-6096
    • Gao, F.1    Davidson, E.H.2
  • 37
    • 0037821924 scopus 로고    scopus 로고
    • Alx1, a member of the Cart1/Alx3/Alx4 subfamily of Pairedclass homeodomain proteins, is an essential component of the gene network controlling skeletogenic fate specification in the sea urchin embryo
    • Ettensohn CA, Illies MR, Oliveri P, De Jong DL. Alx1, a member of the Cart1/Alx3/Alx4 subfamily of Pairedclass homeodomain proteins, is an essential component of the gene network controlling skeletogenic fate specification in the sea urchin embryo. Development 2003, 130(13):2917-2928.
    • (2003) Development , vol.130 , Issue.13 , pp. 2917-2928
    • Ettensohn, C.A.1    Illies, M.R.2    Oliveri, P.3    De Jong, D.L.4
  • 38
    • 0029785546 scopus 로고    scopus 로고
    • Elucidation of homeoprotein Cart-1 function during in vitro chondrogenesis of C3H10T1/2 micromass cultures
    • Atkinson BL, Ryan ME, Benedict JJ, Huffer WE, Gutierrez-Hartmann A. Elucidation of homeoprotein Cart-1 function during in vitro chondrogenesis of C3H10T1/2 micromass cultures. Ann N Y Acad Sci 1996, 785:206-208.
    • (1996) Ann N Y Acad Sci , vol.785 , pp. 206-208
    • Atkinson, B.L.1    Ryan, M.E.2    Benedict, J.J.3    Huffer, W.E.4    Gutierrez-Hartmann, A.5
  • 39
    • 0034342461 scopus 로고    scopus 로고
    • A sea cucumber homolog of the mouse T-Brain-1 is expressed in the invaginated cells of the early gastrula in Holothuria leucospilota
    • Maruyama YK. A sea cucumber homolog of the mouse T-Brain-1 is expressed in the invaginated cells of the early gastrula in Holothuria leucospilota. Zoolog Sci 2000, 17(3):383-387.
    • (2000) Zoolog Sci , vol.17 , Issue.3 , pp. 383-387
    • Maruyama, Y.K.1
  • 40
    • 0032788030 scopus 로고    scopus 로고
    • Origins of immunity: transcription factors and homologues of effector genes of the vertebrate immune system expressed in sea urchin coelomocytes
    • Pancer Z, Rast JP, Davidson EH. Origins of immunity: transcription factors and homologues of effector genes of the vertebrate immune system expressed in sea urchin coelomocytes. Immunogenetics 1999, 49(9):773-786.
    • (1999) Immunogenetics , vol.49 , Issue.9 , pp. 773-786
    • Pancer, Z.1    Rast, J.P.2    Davidson, E.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.