A regulatory gene network that directs micromere specification in the sea urchin embryo

Developmental Biology

Volumn 246, Issue 1, 2002, Pages 209-228

  Oliveri, Paola ^a,b   Carrick, Deanna M ^a   Davidson, Eric H ^a  

^a CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^b Arbor Vita Corporation   (United States)

Author keywords

Delta; Gene regulatory network; Homeodomain; Pmar1; Sea urchin embryo; Tbrain

Indexed keywords

BETA CATENIN; HOMEODOMAIN PROTEIN; NOTCH RECEPTOR; PROTEIN PMAR1; UNCLASSIFIED DRUG;

ARTICLE; EMBRYO DEVELOPMENT; ENDODERM; GENE ACTIVATION; GENE CONTROL; GENE EXPRESSION; GENE INTERACTION; GENE LOCATION; GENETIC TRANSCRIPTION; MESENCHYME; MESODERM; NONHUMAN; PRIORITY JOURNAL; PROTEIN DEGRADATION; SEA URCHIN; SIGNAL TRANSDUCTION; TRANSCRIPTION REGULATION;

ECHINOIDEA; STRONGYLOCENTROTUS; STRONGYLOCENTROTUS PURPURATUS;

EID: 0036607107     PISSN: 00121606     EISSN: None     Source Type: Journal    
DOI: 10.1006/dbio.2002.0627     Document Type: Article

References (85)

1. Direct submission. Submitted (21-MAR-2000) Celera Genomics
2. Animal-vegetal patterning mechanisms in the early sea urchin embryo
3. Sea urchin goosecoid function links fate specification along the animal-vegetal and oral-aboral embryonic axes
4. Expression of the Hox gene complex in the indirect development of a sea urchin
5. Green fluorescent protein tn the sea urchin: New experimental approaches to transcriptional regulatory analysis in embryos and larvae
6. Genome sequence of the nematode C. elegans: A platform for investigating biology
7. Lineage and fate of each blastomere of the eight-cell sea urchin embryo
8. Macromere cell fates during sea urchin development
9. Expression of Chx10 and Chx10-1 in the developing chicken retina
10. Transient appearance of Strongylocentrotus purpuratus Otx in micromere nuclei: Cytoplasmic retention of SpOtx possibly mediated through an α-actinin interaction
11. Ske-T, a T-box, gene expressed in the skeletogenic mesenchyme lineage of the sea urchin embryo
12. Lineage-specific gene expression and the regulative capacities of the sea urchin embryo: A proposed mechanism
13. How embryos work: A comparative view of diverse modes of cell fate specification
14. Specification of cell fate in the sea urchin embryo: Summary and some proposed mechanisms
15. A large, provisional gene regulatory network for endomesodermal specification in the sea urchin embryo
16. Homeobox-containing gene transiently expressed in a spatially restricted pattern in the early sea urchin embryo
17. Spatially restricted expression of PIOtp, a Paracentrotus lividus Orthopedia-related homeobox gene, is correlated with oral ectodermal patterning and skeletal morphogenesis in late-cleavage sea urchin embryos
18. Fertilization, cleavage and early development
19. Limited complexity of the RNA in micromeres of sixteen-cell sea urchin embryos
20. Cell interactions and mesodermal cell fates in the sea urchin embryo
21. A region of mouse chromosome 16 is syntenic to the DiGeorge, velocardiofacial syndrome minimal critical region
22. Evolution of homeobox genes: Q50 Paired-like genes found in the Paired class
23. Regulatory elements from the related spec genes of Strongylocentrotus purpuratus yield different spatial patterns with a lacZ reporter gene
24. The DiGeorge syndrome minimal critical region contains a goosecoid-like (GSCL) homeobox gene that is expressed early in human development
25. Skeletal morphogenesis in the sea urchin embryo: Regulation of primary mesenchyme gene expression and skeletal rod growth by ectoderm-derived cues
26. RINX(VSX1), a novel homeobox gene expressed in the inner nuclear layer of the adult retina
27. Cephalic expression and molecular characterization of Xenopus En-2
28. The mechanics of sea urchin development, studied by operative methods
29. Anf: A novel class of vertebrate homeobox genes expressed at the anterior end of the main embryonic axis
30. SpSoxB1, a maternally encoded transcription factor asymmetrically distributed among early sea urchin blastomeres
31. The accumulation and translation of a spicule matrix protein mRNA during sea urchin embryo development
32. Major temporal and spatial patterns of gene expression during differentiation of the sea urchin embryo
33. Developmental expression of synthetic cis-regulatory systems composed of spatial control elements from two different genes
34. HpEts, an ets-related transcription factor implicated in primary mesenchyme cell differentiation in the sea urchin embryo
35. HpEts implicated in primary mesenchyme cell differentiation of the sea urchin (Hemicentrotus pulcherrimus) embryo
36. Activation of sea urchin actin genes during embryogenesis. Measurement of transcript accumulation from five different genes in Strongylocentrotus purpuratus
37. A molecular titration assay to measure transcript prevalence levels
38. SM37, a new skeletogenic gene of the sea urchin embryo isolated by regulatory target site screening
39. Expression cloning of siamois, a Xenopus homeobox gene expressed in dorsal-vegetal cells of blastulae and able to induce a complete secondary axis
40. Segregating expression domains of two goosecoid genes during the transition from gastrulation to neurulation in chick embryos
41. Requirement of SpOtx in cell fate decisions in the sea urchin embryo and possible role as a mediator of beta-catenin signaling
42. Developmental expression of a novel murine homeobox gene (Chx10): Evidence for roles in determination of the neuroretina and inner nuclear layer
43. Nuclear β-catenin is required to specify vegetal cell fates in the sea urchin embryo
44. Drosophila Goosecoid requires a conserved heptapeptide for repression of paired-class homeoprotein activators
45. Cis-regulatory control of the SM50 gene, an early marker of skeletogenic lineage specification in the sea urchin embryo
46. Altering cell fates in sea urchin embryos by overexpressing SpOtx, an orthodenticle-related protein
47. Pattern formation during gastrulation in the sea urchin embryo
48. A micromere induction signal is activated by β-catenin and acts through Notch to initiate specification of secondary mesenchyme cells in the sea urchin embryo
49. Polyubiquitin RNA characteristics and conditional induction in sea urchin embryos
50. Amphioxus goosecoid and the evolution of the head organizer and prechordal plate
51. Endo16, a lineage-specific protein of the sea urchin embryo, is first expressed just prior to gastrulation
52. Spicule formation by isolated micromeres of the sea urchin embryo
53. Cloning of zebrafish vsx1: Expression of a paired-like homeobox gene during CNS development
54. Multiplex display polymerase chain reaction amplifies and resolves related sequences sharing a single moderately conserved domain
55. The engrailed locus of Drosophila: Structural analysis of an embryonic transcript
56. A complete second gut induced by transplanted micromeres in the sea urchin embryo
57. Whole mount in situ hybridization shows Endo16 to be a marker for the vegetal plate territory in sea urchin embryos
58. Micromeres are required for normal vegetal plate specification in sea urchin embryos
59. New early zygotic regulators of endomesoderm specification in sea urchin embryos discovered by differential array hybridization
60. Recovery of developmentally defined gene sets from high-density cDNA macroarrays
61. Expression of an embryonic spicule matrix gene in calcified tissues of adult sea urchins
62. Inhomogeneous distribution of egg RNA sequences in the early embryo
63. Mix.1, a homeobox mRNA inducible by mesoderm inducers, is expressed mostly in the presumptive endodermal cells of Xenopus embryos
64. A fate map of the vegetal plate of the sea urchin (Lytechinus variegatus) mesenchyme blastula
65. Isolation and characterization of a novel human pair-like homeodomain-containing transcription factor gene, VSX1, expressed in ocular tissues
66. Identification and localization of a sea urchin Notch homologue: Insights into vegetal plate regionalization and Notch receptor regulation
67. LvNotch signaling mediates secondary mesenchyme specification in the sea urchin embryo
68. LvNotch signaling plays a dual role in regulating the position of the ectoderm-endoderm boundary in the sea urchin embryo
69. A starfish homolog of mouse T-brain-1 is expressed in the archenteron of Asterina pectinifera embryos: Possible involvement of two T-box genes in starfish gastrulation
70. Orthopedia, a novel homeobox-containing gene expressed in the developing CNS of both mouse and Drosophila
71. A conserved region of engrailed, shared among all en-, gsc-, NK1-, NK2- and msh-class homeoproteins, mediates active transcriptional repression in vivo
72. LvDelta is a mesoderm-inducing signal in the sea urchin embryo and can endow blastomeres with organizer-like properties
73. The role of micromere signaling in Notch activation and mesoderm specification during sea urchin embryogenesis
74. The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
75. Expression of spicule matrix proteins in the sea urchin embryo during normal and experimentally altered spiculogenesis
76. SpZ-1, a negative regulator required for spatial control of the territory-specific CyIIIa gene in the sea urchin embryo
77. Matrix and mineral in the sea urchin larval skeleton
78. Molecular heterochronies and heterotopies in early echinoid development
79. A novel homeobox gene expressed in the anterior neural plate of the Xenopus embryo
80. Large-scale analysis of mRNAs expressed by primary mesenchyme cells of the sea urchin embryo