Seawi - A sea urchin piwi/argonaute family member is a component of MT-RNP complexes

RNA

Volumn 11, Issue 5, 2005, Pages 646-656

  Rodriguez, Alexis J ^a   Seipel, Susan A ^a   Hamill, Danielle R ^b   Romancino, Daniele P ^c   Di Carlo, Marta ^c   Suprenant, Kathy A ^b   Bonder, Edward M ^a  

^a RUTGERS UNIVERSITY   (United States)

^b UNIVERSITY OF KANSAS   (United States)

^c CNR Consiglio Nazionale delle Ricerche   (Italy)

Author keywords

Argonaute; Axis specification; Microtubule; mRNA localization; mRNP; Piwi

Indexed keywords

ARTICLE; CONTROLLED STUDY; GENETIC TRANSCRIPTION; IMMUNOFLUORESCENCE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OOCYTE CORTEX; PRIORITY JOURNAL; RNA BINDING; RNA PURIFICATION; RNA TRANSLATION; SEA URCHIN; STEM CELL;

AMINO ACID SEQUENCE; ANIMALS; CLONING, MOLECULAR; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE LIBRARY; MEMBRANE PROTEINS; MICROTUBULES; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; MULTIPROTEIN COMPLEXES; PROTEIN BINDING; PROTEINS; RIBONUCLEOPROTEINS; RIBOSOMES; RNA, MESSENGER; SEA URCHINS; SEQUENCE ANALYSIS, DNA;

ANIMALIA; ECHINOIDEA; PARACENTROTUS LIVIDUS; STRONGYLOCENTROTUS PURPURATUS;

EID: 17844389337     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1261/rna.7198205     Document Type: Article

References (54)

1. Angerer, L.M. and Angerer, R.C. 2000. Animal-vegetal axis patterning mechanisms in the early sea urchin embryo. Dev. Biol. 218: 1-12.
2. Aplin, A.E. and Juliano, R.L. 2001. Regulation of nucleocytoplasmic trafficking by cell adhesion receptors and the cytoskeleton. J. Cell Biol. 155: 187-191.
3. Barbarese, E., Koppel, D.E., Deutscher, M.P., Smith, C.L., Ainger, K., Morgan, F., and Carson, J.H. 1995. Protein translation components are colocalized in granules in oligodendrocytes. J. Cell Sci. 108: 2781-2790.
4. Bonder, E.M., Fishkind, D.J., Cotran, N.M., and Begg, D.A. 1989. The cortical actin-membrane cytoskeleton of unfertilized sea urchin eggs: Analysis of the spatial organization and relationship of filamentous actin, nonfilamentous actin, and egg spectrin. Dev. Biol. 134: 327-341.
5. Brandhorst, B.P. and Klein, W.H. 2002. Molecular patterning along the sea urchin animal-vegetal axis. Int. Rev. Cytol. 213: 183-232.
6. Carmell, M.A., Xuan, Z., Zhang, M.Q., and Hannon, G.J. 2002. The Argonaute family: Tentacles that reach into RNAi, developmental control, and tumorigenesis. Genes & Dev. 16: 2733-2742.
7. Carrera, P., Johnstone, O., Nakamura, A., Casanova, J., Jackle, H., and Lasko, P., 2000. VASA mediates translation through interaction with a Drosophila yIF2 homolog. Mol. Cell 5: 181-187.
8. Cerutti, L., Mian, N., and Bateman, A. 2000. Domains in gene silencing and cell differentiation proteins: The novel PAZ domain and redefinition of the Piwi domain. Trends Biochem. Sci. 25: 481-482.
9. Chen, C.Z., Li, L., Lodish, H.F., and Bartel, D.P. 2004. MicroRNAs modulate hematopoietic lineage differentiation. Science 303: 83-86.
10. Cox, D.N., Chao, A., Baker, J., Chang, L., Qiao, D., and Lin, H. 1998. A novel class of evolutionarily conserved genes defined by piwi are essential for stem cell self-renewal. Genes & Dev. 12: 3715-3727.
11. Davidson, E.H. 1986. Gene Activity in Early Development, 4th ed. Academic Press, Inc., Orlando.
12. Davidson, E.H., Rast, J.P., Oliveri, P., Ransick, A., Calestani, C., Yuh, C.H., Minokawa, T., Amore, G., Hinman, V., Arenas-Mena, C., et al. 2002. A genomic regulatory network for development. Science 295: 1669-1678.
13. Fagard, M., Boutet, S., Morel, J.B., Bellini, C., and Vaucheret, H. 2000. AGO1, QDE-2, and RDE-1 are related proteins required for posttranscriptional gene silencing in plants, quelling in fungi, and RNA interference in animals. Proc. Natl. Acad. Sci. 97: 11650-11654.
14. Faire, K. and Bonder, E.M. 1993. Sea urchin egg 100-kDa dynamin-related protein: Identification of and localization to intracellular vesicles. Dev. Biol. 159: 581-594.
15. Gibbins, J.R., Tilney, L.G., and Porter, K.R. 1969. Microtubules in the formation and development of the primary mesenchyme in Arbacia punctulata. I. The distribution of microtubules. J. Cell Biol. 41: 201-226.
16. Hamill, D.R., and Suprenant, K.A. 1997. Characterization of the sea urchin major vault protein: A possible role for vault ribonucleoprotein particles in nucleocytoplasmic transport. Dev. Biol. 190: 117-128.
17. Hamill, D., Davis, J., Drawbridge, J., and Suprenant, K.A. 1994. Polyribosome targeting to microtubules: Enrichment of specific mRNAs in a reconstituted microtubule preparation from sea urchin embryos. J. Cell Biol. 127: 973-984.
18. Hammond, S.M., Boettcher, S., Caudy, A.A., Kobayashi, R., and Hannon, G.J. 2001. Argonaute2, a link between genetic and biochemical analyses of RNAi. Science 293: 1146-1150.
19. Harris, A.N. and Macdonald, P.M. 2001. Aubergine encodes a Drosophila polar granule component required for pole cell formation and related to eIF2C. Development 128: 2823-2832.
20. Hille, M.B. and Danilchik, M.V. 1986. The protein synthetic machinery: Ribosomes and cell-free systems. Methods Cell Biol. 27: 175-188.
21. Hirokawa, N., Takemura, R., and Hisanaga, S. 1985. Cytoskeletal architecture of isolated mitotic spindle with special reference to microtubule-associated proteins and cytoplasmic dynein. J. Cell Biol. 101: 1858-1870.
22. Kennerdell, J.R., Yamaguchi, S., and Carthew, R.W. 2002. RNAi is activated during Drosophila oocyte maturation in a manner dependent on aubergine and spindle-E. Genes & Dev. 16: 1884-1889.
23. Knowles, R.B., Sabry, J.H., Martone, M.E., Deerinck, T.J., Ellisman, M.H., Bassell, G.J., and Kosik, K.S. 1996. Translocation of RNA granules in living neurons. J. Neurosci. 16: 7812-7820.
24. Kuramochi-Miyagawa, S., Kimura, T., Yomogida, K., Kuroiwa, A., Tadokoro, Y., Fujita, Y., Sato, M., Matsuda, Y., and Nakano, T. 2001. Two mouse piwi-related genes: miwi and mili. Mech. Dev. 108: 121-133.
25. Lingel, A., Simon, B., Izaurralde, E., and Sattler, M. 2003. Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain. Nature 426: 465-469.
26. _. 2004. Nucleic acid 3′-end recognition by the Argonaute2 PAZ domain. Nat. Struct. Mol. Biol. 426: 576-577.
27. Lipshitz, H.D. and Smibert, C.A. 2000. Mechanisms of RNA localization and translational regulation. Curr. Opin. Genet. Dev. 10: 476-488.
28. Logan, C.Y., Miller, J.R., Ferkowicz, M.J., and McClay, D.R. 1999. Nuclear beta-catenin is required to specify vegetal cell fates in the sea urchin embryo. Development 126: 345-357.
29. Ma, J.B., Ye, K., and Patel, D.J. 2004. Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain. Nature 429: 318-322.
30. Miller, J.R. and McClay, D.R. 1997. Changes in the pattern of adherens junction-associated beta-catenin accompany morphogenesis in the sea urchin embryo. Dev. Biol. 192: 310-322.
31. Montana, G., Bonura, A., Romancino, D.P., Sbisa, E., and DiCarlo, M. 1997. A 54 kDa protein specifically associates the 3′ untranslated region of three maternal mRNAs with the cytoskeleton of the animal part of the Paracentrotus lividus egg. Eur. J. Biochem. 247: 183-198.
32. Montana, G., Sbisa, E., Romancino, D.P., Bonura, A., and DiCarlo, M. 1998. Folding and binding activity of the 3'UTRs of Paracentrotus lividus bep messengers. FEBS Lett. 425: 157-160.
33. Moss, E.G. 2001. RNA interference: It's a small world. Curr. Biol. 11: R772-R775.
34. Nelson, P.T., Hatzigeorgiou, A.G., and Mourelatos, Z. 2004. miRNP: mRNA association in polysomes in human neuronal cell line. RNA 10: 387-394.
35. Parker, J.S., Roe, S.M., and Barford, D. 2004. Crystal structure of a PIWI protein suggests mechanisms for siRNA recognition and slicer activity. EMBO J. 23: 4727-4737.
36. Peterson, K.J., Cameron, R.A., and Davidson, E.H. 1997. Set-aside cells in maximal indirect development: Evolutionary and developmental significance. Bioessays 19: 623-631.
37. Pokrywka, N.J. and Stephenson, E.C. 1995. Microtubules are a general component of mRNA localization systems in Drosophila oocytes. Dev. Biol. 167: 363-370.
38. Rand, T.A., Ginalski, K., Grishin, N.V., and Wang, X. 2004. Biochemical identification of Argonaute 2 as the sole protein required for RNA-induced silencing complex activity. Proc. Natl. Acad. Sci. 101: 14385-14389.
39. Romancino, D.P. and Di Carlo, M. 1999. Asymmetrical localization and segregation of Paracentrotus lividus Bep4 maternal protein. Mech. Dev. 87: 3-9.
40. Romancino, D.P., Montana, G., and Di Carlo, M. 1998. Involvement of the cytoskeleton in localization of Paracentrotus lividus maternal BEP mRNAs and proteins. Exp. Cell Res. 238: 101-109.
41. Romancino, D.P., Montana, G., Dalmazio, S., and Di Carlo, M. 2001. Bep4 protein is involved in patterning along the animal-vegetal axis in the Paracentrotus lividus embryo. Dev. Biol. 234: 107-119.
42. Runnstrom, J. 1929. Uber selbstfifferenzierung and induction bei dem seeigelkeim. With. Roux Arch. 117: 123-145.
43. Sardet, C., Prodon, F., Dumollard, R., Chang, P., and Chenevert, J. 2002. Structure and function of the egg cortex from oogenesis through fertilization. Dev. Biol. 241: 1-23.
44. Sharma, A.K., Nelson, M.C., Brandt, J.E., Wessman, M., Mahmud, N., Weller, K.P., and Hoffman, R. 2001. Human CD34(+) stem cells express the hiwi gene, a human homologue of the Drosophila gene piwi. Blood 97: 426-434.
45. Sirotkin, V., Seipel, S., Krendel, M., and Bonder, E.M. 2000. Characterization of sea urchin unconventional myosins and analysis of their patterns of expression during early embryogenesis. Mol. Reprod. Dev. 57: 111-126.
46. Song, J.J., Smith, S.K., Hannon, G.J., and Joshua-Tor, L. 2004. Crystal structure of Argonaute and its implications for RISC slicer activity. Science. 305: 1434-1437.
47. Suprenant, K.A. and Marsh, J.C. 1987. Temperature and pH govern the self-assembly of microtubules from unfertilized sea-urchin egg extracts. J. Cell Sci. 87: 71-84.
48. Suprenant, K.A., Tempero, L.B., and Hammer, L.E. 1989. Association of ribosomes with in vitro assembled microtubules. Cell Motil. Cytoskeleton 14: 401-415.
49. Tabara, H., Sarkissian, M., Kelly, W.G., Fleenor, J., Grishok, A., Timmons, L., Fire, A., and Mello, C.C. 1999. The rde-1 gene, RNA interference, and transposon silencing in C. elegans. Cell 99: 123-132.
50. Vonica, A., Weng, W., Gumbiner, B.M., and Venuti, J.M. 2000. TCF is the nuclear effector of the beta-catenin signal that patterns the sea urchin animal-vegetal axis. Dev. Biol. 217: 230-243.
51. Voronina, E., Lopez, M.E., Song, J., Gustafson, E., Oliveri, P., Ransick, A., McClay, D.R., and Wessel, G.M. 2004. Germ cell formation in the sea urchin. Mol. Biol. Cell (Suppl.) 15: 135a.
52. Wilson, E.B. 1925. The cell in development and heredity, 3d ed. Macmillan, New York.
53. Wilson, J.E., Connell, J.E., and Macdonald, P.M. 1996. aubergine enhances oskar translation in the Drosophila ovary. Development 122: 1631-1639.
54. Yan, K.S., Yan, S., Farooq, A., Han, A., Zeng, L., and Zhou, M.M. 2003. Structure and conserved RNA binding of the PAZ domain. Nature 426: 468-474.