Genomic diversity of Oenococcus oeni from different winemaking regions of Portugal

International Microbiology

Volumn 14, Issue 3, 2011, Pages 155-162

  Marques, Ana P ^a   Duarte, Ana J ^a   Chambel, Lélia ^b   Teixeira, Maria F ^c   Romãeo, Maria V San ^a,d   Tenreiro, Rogério ^b  

^a INSTITUTO DE TECNOLOGIA QUÍMICA E BIOLÓGICA   (Portugal)

^b UNIVERSITY OF LISBON   (Portugal)

^c Proenol Biotechnological Industry   (Portugal)

^d Ex National Wine Station   (Portugal)

Author keywords

Fingerprinting; Genomic diversity; Lactic acid bacteria (LAB); M13 PCR; Oenococcus oeni; Portuguese winemaking regions

Indexed keywords

EID: 82155171956     PISSN: 11396709     EISSN: 16181905     Source Type: Journal    
DOI: 10.2436/20.1501.01.144     Document Type: Article

References (54)

1. Altschul SF, Madden TL, Shäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
2. Bartowsky EJ, McCarthy JM, Henscheke PA (2003) Differentiation of Australian wine isolates of Oenococcus oeni using random amplified polymorphic DNA (RAPD). Aus J Grape Wine Res 9:122-126
3. Bartowsky EJ (2005) Oenococcus oeni and malolactic fermentation-moving into the molecular arena. Australian J Grape Wine Res 11:174-187
4. Britz TJ, Tracey RP (1990) The combination effect of pH, sulphur dioxide, ethanol and temperature on the growth of Leuconostoc oenos. J Appl Bacteriol 68:23-31
5. Caspritz G, Radler F (1983) Malolactic enzyme of Lactobacillus plantarum. J Biol Chem 258:4907-4910
6. Daniel P, de Weale E, Hallet JN (1993) Optimization of transverse alternating field electrophoresis for strain identification of Leuconostoc oenos. Appl Microbiol Biotech 38:638-641
7. de las Rivas B, Marcobal A, Muñoz R (2004) Allelic diversity and population structure in Oenococcus oeni as determined from sequence analysis of housekeeping genes. Appl Environ Microbiol 70:7210-7219
8. Delaherche A, Bon E, Dupé A, Lucas M, Arveiler B, De Daruvar A, Lonvaud-Funel A (2006) Intraspecific diversity of Oenococcus oeni strains determined by sequence analysis of target genes. Appl Microbiol Biotechnol 73:394-403
9. Dicks LMT, van Vuuren HJJ, Dellaglio F (1990) Taxonomy of Leuconostoc species, particulary Leuconostoc oenos, as revealed by numerical analysis of total soluble cell proteins patterns, DNA base compositions, and DNA-DNA hybridization. Int J Syst Bacteriol 40:83-91
10. Dicks LMT, Dellaglio F, Collins MD (1995) Proposal to reclassify Leuconostoc oenos as Oenococcus oeni [corrig.] gen. nov., comb. nov. Int J Syst Bacteriol 45:395-397
11. Du Plessis EM, Dicks LMT, Pretorius IS, Lambrechts MG, du Toit M (2004) Identification of lactic acid bacteria isolated from South African brandy base wines. Int J Food Microbiol 91:19-29
12. Everitt BS (1993) Cluster analysis, 3rd ed. John Wiley, New York, USA
13. Garvie EI (1967) Leuconostoc oenos sp. nov. J Gen Microbiol 48:431-438
14. Garvie EI (1974) Genus Leuconostoc. In: Buchanan RE, Gibbons NE (eds) Bergey's Manual of Determinative Bacteriology. The Williams & Wilkins Co., Baltimore, MD, USA
15. Gerhardt P, Murray RGE, Costilow RN, Nester EW, Wood WA, Krieg NR, Phillips GB (1981) Manual of methods for general bacteriology. American Society for Microbiology, Washington DC, USA
16. Henick-Kling T (1993) Malolactic fermentation. In: Fleet GH (ed) Wine microbiology and biotechnology. Harwood Academic Press, Chur, Switzerland, pp 289-326
17. Huey B, Hall J (1989) Hypervariable DNA fingerprinting in E. coli minisatellite probe from bacteriophage M13. J Bacteriol 171:2528-2532
18. Hunter PR, Gaston MA (1988) Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J Clin Microbiol 26:2465-2466
19. Kelly WJ, Huang CM, Asmundson RV (1993) Comparison of Leuconostoc oenos strains by pulsed-field gel electrophoresis. Appl Environ Microbiol 59:3969-3972
20. Kunkee RE (1991) Some roles of malic acid in the malolactic fermentation in winemaking. FEMS Microbiol Rev 88:55-72
21. Larisika M, Claus H, König H (2008) Pulsed-field gel electrophoresis for the discrimination of Oenococcus oeni isolates from different winegrowing regions in Germany. Int J Food Microbiol 123:171-176
22. Lechiancole T, Blaiotta G, Messina D, Fusco V, Villani F, Salzano G (2006) Evaluation of intra-specific diversities in Oenococcus oeni through analysis of genomic and expressed DNA. Syst Appl Microbiol 29:375-381
23. Le Jeune C, Lonvaud-Funel A (1997) Sequence of DNA 16S/23S spacer region of Leuconostoc oenos (Oenococcus oeni): application to strain differentiation. Res Microbiol 148:79-86
24. Li Y, Raftis E, Canchaya C, Fitzgerald GF, van Sinderen D, O'toole PW (2006) Polyphasic analysis indicates that Lactobacillus salivarius subsp. salivarius and Lactobacillus salivarius subsp. salicinius do not merit separate subspecies status. Int J Syst Evol Microbiol 56:2397-2403
25. Lonvaud-Funel A, Fremaux C, Biteau N (1989) Identification de L. oenos per l'utilisation de sondes d'ADN. Sci Aliments 8:33-49
26. Lonvaud-Funel A, Fremaux C, Biteau N, Joyeux A (1991) Speciation of lactic acid bacteria from wines by hybridisation with DNA probes. Food Microbiol 8:215-222
27. Lonvaud-Funel A (1999) Lactic acid bacteria in quality improvement and depreciation of wine. Ant van Leeuwenhoek 76:317-331
28. López I, Tenorio C, Zarazaga M, Dizy M, Torres C, Ruiz-Larrea F (2007) Evidence of mixed wild populations of Oenococcus oeni strains during wine spontaneous malolactic fermentations. Eur Food Res Technol 226:215-223
29. Malacrinò P, Zapparoli G, Torriani S, Dellaglio F (2003) Adaptation in Amarone wine of indigenous Oenococcus oeni strains differentiated by pulsed-field gel electrophoresis. Ann Microbiol 53:55-61
30. Marcobal AM, Sela DA, Wolf YI, Makarova KS, Mills DA (2008.) Role of hypermutability in the evolution of the genus Oenococcus. J Bacteriol 190:564-570
31. Marques AP, Zé-Zé L, San-Romão MV, Tenreiro R (2010) A novel molecular method for Oenococcus oeni and its specific detection in wine. Int J Food Microbiol 142:251-255
32. Martinez Murcia AJ, Collins MD (1990) A phylogenetic analysis of the genus Leuconostoc based on reverse transcriptase sequencing of 16S rRNA. FEMS Microbiol Lett 58:78-83
33. Moreno-Arribas MV, Polo C (2008) Occurrence of lactic acid bacteria and biogenic amines in biologically aged wines. Food Microbiol 25:875-881
34. Pardo I, Garcia MJ, Zuniga M, Uruburu F (1988) Evaluation of the API 50CHL system for identification of Leuconostoc oenos. Am J Enol Vitic 39:347-350
35. Peynaud E, Domercq S (1968) Étude de quatre cents souches de coques heterolactiques isolés de vins. Ann Inst Pasteur 19:159-169
36. Pozo-Bayón MA, Pardo I, Ferrer S, Moreno-Arribas MV (2009) Molecular approaches for the identification and characterisation of oenological lactic acid bacteria. Afr J Biotechnol 8:3995-4001
37. Reguant C, Bordons A (2003) Typification of Oenococcus oeni strains by multiplex RAPD-PCR and study of population dynamics during malolactic fermentation. J Appl Microbiol 95:344-353
38. Reguant C, Carreté R, Ferrer N, Bordons A (2005) Molecular analysis of Oenococcus oeni population dynamics and the effect of aeration and temperature during alcoholic fermentation on malolactic fermentation. Int J Food Sci Technol 40:451-459
39. Renouf V, Vayssieres LC, Claisse O, Lonvaud-Funel A (2009) Genotypic and phenotypic evidence for two groups of Oenococcus oeni strains and their prevalence during winemaking. Appl Microbiol Biotecnhol 83:85-97
40. Rodriguez SB, Amberg E, Thornton RJ, McLellan MR (1990) Malolactic fermentation in Chardonnay, growth and sensory effects of commercial strains of Leuconostoc oenos. J Appl Bacteriol 68:139-144
41. Ruíz P, Izquierdo PM, Seseña S, Palop ML (2008) Intraspecific genetic diversity of lactic acid bacteria from malolactic fermentation of Cencibel wines as derived from combined analysis of RAPD-PCR and PFGE patterns. Food Microbiol 25:942-948
42. Sato H, Yanagida F, Shinohara T, Suzuki M, Suzuki K, Yokotsuka K (2001) Instraspecific diversity of Oenococcus oeni isolated during red wine-making in Japan. FEMS Microbiol Lett 202:109-114
43. Stackebrandt E, Frederiksen W, Garrity GM, Grimont PAD, Kämpfer P, Maiden MCJ, Nesme X, Rosselló-Mora R, Swings J, Trüper HG, Vauterin L, Ward AC, Whitman WB (2002) Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52:1043-1047
44. Suerbaum S, Smith JM, Bapumia K, Morelli G, Smith NH, Kunstmann E, Dyrek I, Achtman M (1998) Free recombination within Helicobacter pylori. Proc Natl Acad Sci USA 95:12619-12624
45. Tenreiro R, Santos MA, Paveia H, Vieira G (1994) Inter-strain relationships among wine leuconostocs and their divergence from other Leuconostoc species, as revealed by low frequency restriction fragment analysis of genomic DNA. J Appl Bacteriol 77:271-280
46. Ulrike E, Rogall T, Blocker H, Emde M, Bottger EC (1989) Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acid Res 17:7843-7853
47. Vauterin L, Vauterin P (1992) Computer aided objective comparison of electrophoretic patterns for grouping and identification of microorganisms. Eur Microbiol 1:37-41
48. Viti C, Giovannetti L, Granchi L, Ventura S (1996) Species attribution and strain typing of Oenococcus oeni (formerly Leuconostoc oenos) with restriction endonuclease fingerprints. Res Microbiol 147:651-660
49. Whitaker RJ (2006) Allopatic origins of microbial species. Phil Trans R Soc B 331:1975-1984
50. Zapparoli G, Regaunt C, Bordons A, Torriani S, Dellaglio F (2000) Genomic DNA fingerprinting of Oenococcus oeni strains by pulsedfield gel electrophoresis and randomly amplified polymorphic DNAPCR. Curr Microbiol 40:351-355
51. Zar JH (1996) Biostatistical analysis. Prentice Hall Inc., New Jersey, USA
52. Zavaleta AI, Martínez-Murcia AJ, Rodríguez-Valera F (1996) 16S-23S rDNA intergenic sequences indicate that Leuconostoc oenos is phylogenetically homogeneous. Microbiology 142:2105-2114
53. Zavaleta AI, Martínez-Murcia AJ, Rodrìguez-Valera F (1997) Intraspecific genetic diversity of Oenococcus oeni as derived from DNA fingerprinting and sequence analyses. Appl Environ Microbiol 63:1261-1267
54. Zé-Zé L, Chelo IM, Tenreiro R (2008) Genome organization in Oenococcus oeni strains studied by comparison of physical and genetic maps. Int Microbiol 11:237-244