16S-23S rDNA intergenic sequences indicate that Leuconostoc oenos is phylogenetically homogeneous

Microbiology

Volumn 142, Issue 8, 1996, Pages 2105-2114

  Zavaleta, Amparo I ^a   Martínez Murcia, Antonio J ^a   Rodríguez Valera, Francisco ^a  

^a UNIVERSITY OF ALICANTE   (Spain)

Author keywords

16S 23S ribosomal spacer sequence; Leuconostoc oenos; rrn operons; Weissella

Indexed keywords

ALANINE TRANSFER RNA; BACTERIAL DNA; RIBOSOME DNA; RNA 16S; SPACER DNA;

ARTICLE; BACTERIAL GENETICS; DNA DNA HYBRIDIZATION; DNA SEQUENCE; LEUCONOSTOC; NONHUMAN; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEQUENCE HOMOLOGY;

BACTERIA (MICROORGANISMS); LEUCONOSTOC; OENOCOCCUS OENI; WEISSELLA;

EID: 0029828347     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/13500872-142-8-2105     Document Type: Article

References (59)

1. Bacot, C. M. & Reeves, R. H. (1991). Novel tRNA gene organization in the 16S-23S intergenic spacer of the Streptococcus pneumoniae rRNA gene cluster. J Bacteriol 173, 4234-4236.
2. Barry, T., Colleran, G., Glennon, M. M., Dunican, L. K. & Gannon, F. (1991). The 16S/23S ribosomal spacer region as a target for DNA probes to identify eubacteria. PCR Methods Appl 1, 51-56.
3. Beelman, R. B., Gavin, A., III & Keen, R. M. (1977). A new strain of Leuconostoc oenos for induced malo-lactic fermentation in eastern wines. Am J Enol Vitic 28, 159-165.
4. Brosius, J., Palmer, J. L., Kennedy, H. P. & Noller, H. F. (1978). Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci USA 75, 4801-4805.
5. Brosius, J., Dull, T. J. & Noller, H. F. (1980). Complete nucleotide sequence of a 23S ribosomal RNA gene from Escberichia coli. Proc Natl Acad Sci USA 77, 201-204.
6. Cartwright, C. P., Stock, F., Beekmann, S. E., Williams, E. C. & Gill, V. J. (1995). PCR amplification of rRNA intergenic spacer region as a method for epidemiologic typing of Clostridium difficile. J Clin Microbiol 33, 184-187.
7. Chiaruttini, C. & Milet, M. (1993). Gene organization, primary structure and RNA processing analysis of a ribosomal RNA operon in Lactococcus lactis. J Mol Biol 230, 57-76.
8. Collins, M. D., Samelis, J., Metaxopoulos, J. & Wallbanks, S. (1993). Taxonomic studies on some leuconostoc-like organisms from fermented sausages: description of a new genus Weissella for the Leuconostoc paramesenteroides group of species. J Appl Bacteriol 75, 595-603.
9. Dicks, L. M. T., van Vuuren, H. J. J. & Dellaglio, F. (1990). Taxonomy of Leuconostoc species, particularly Leuconostoc oenos, as revealed by numerical analysis of total soluble cell protein patterns, DNA base compositions and DNA-DNA hybridizations. Int J Syst Bacteriol 40, 83-91.
10. Dicks, L. M. T., Dellaglio, F. & Collins, M. D. (1995a). Proposal to reclassify Leuconostoc oenos as Oenococcus oeni [corrig.] gen. nov., comb. nov. Int J Syst Bacteriol 45, 395-397.
11. Dicks, L. M. T., Loubser, P. A. & Augustyn, O. P. H. (1995b). Identification of Leuconostoc oenos from South African fortified wines by numerical analysis of total soluble cell protein patterns and DNA-DNA hybridizations. J Appl Bacteriol 79, 43-48.
12. Dolzani, L., Tonin, E., Lagatolla, C. & Monti-Bragadin, C. (1994). Typing of Staphylococcus aureus by amplification of the 16S-23S rRNA intergenic spacer sequences. FEMS Microbiol Lett 119, 167-174.
13. Farrow, J. A. E., Facklan, R. R. & Collins, M. D. (1989). Nucleic acid homologies of some vancomycin-resistant leuconostocs and description of Leuconostoc citreum sp. nov. and Leuconostoc pseudomesenteroides sp. nov. Int J Syst Bacteriol 39, 279-283.
14. Feingold, J., Bellofatto, V., Shapiro, L. & Amemiya, K. (1985). Organization and nucleotide sequence analysis of an rRNA and tRNA gene cluster from Caulobacter crescentus. J Bacteriol 163, 155-166.
15. Fleet, G. H., Lafon-Laforcade, S. & Ribéreau-Gayon, P. (1984). Evolution of yeasts and lactic acid bacteria during fermentation and storage of Bordeaux wines. Appl Environ Microbiol 48, 1034-1038.
16. Garvie, E. I. (1967). Leuconostoc oenos sp. nov. J Gen Microbiol 48, 431-438.
17. Garvie, E. I. (1969). Lactic dehydrogenases of strains of the genus Leuconostoc. J Gen Microbiol 58, 85-94.
18. Garvie, E. I. (1976). Hybridization between the deoxyribonucleic acids of some strains of heterofermentative lactic acid bacteria. Int J Syst Bacteriol 26, 116-122.
19. Garvie, E. I. (1981). Sub-divisions within the genus Leuconostoc as shown by RNA/DNA hybridization. J Gen Microbiol 127, 209-212.
20. Garvie, E. I. (1986). Genus Leuconostoc. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1071-1075. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
21. Garvie, E. I. & Farrow, J. A. E. (1980). The differentiation of Leuconostoc oenos from non-acidophilic species of Leuconostoc, and the identification of five strains from the American Type Culture Collection. Am J Enol Vitic 31, 154-157.
22. van der Giessen, J. W. B., Haring, R. M. & Van der Zeijst, B. A. M. (1994). Comparison of the 23S ribosomal RNA genes and the spacer region between the 16S and 23S rRNA genes of the closely related Mycobacterium avium and Mycobacterium paratuberculosis and the fast-growing Mycobacterium phlei. Microbiology 140, 1103-1108.
23. Gürtler, V. & Barrie, H. D. (1995). Typing of Staphylococcus aureus strains by PCR-amplification of variable-length 16S-23S rDNA spacer regions: characterization of spacer sequences. Microbiology 141, 1255-1265.
24. Hall, L. M. C. (1994). Are point mutations or DNA rearrangements responsible for the restriction fragment length polymorphisms that are used to type bacteria? Microbiology 140, 197-204.
25. Harvey, S., Hill, C. W., Squires, C. & Squires, C. L. (1988). Loss of the spacer loop sequence from the rrnB operons in the Escherichia coli K-12 subline that bears the relA1 mutation. J Bacteriol 170, 1235-1238.
26. Hofman, J. D., Lau, R. H. & Doolittle, W. F. (1979). The number, physical organization and transcription of ribosomal RNA cistrons in an archaebacterium: Halobacterium halobium. Nucleic Acids Res 7, 1321-1333.
27. Hontebeyrie, M. & Gasser, F. (1977). Deoxyribonucleic acid homologies in the genus Leuconostoc. Int J Syst Bacteriol 27, 9-14.
28. Jensen, M. A., Webster, J. A. & Straus, N. (1993). Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms. Appl Environ Microbiol 59, 945-952.
29. Kostman, J. R., Edlind, T. D., LiPuma, J. J. & Stull, T. L. (1992). Molecular epidemiology of Pseudomonas cepacea determined by polymerase chain reaction ribotyping. J din Microbiol 30, 2048-2087.
30. Krawiec, S. & Riley, M. (1990). Organization of the bacterial chromosome. Microbiol Rev 54, 502-539.
31. Kunkee, R. E. (1991). Some roles of malic acid in the malolactic fermentation in wine making. FEMS Microbiol Rev 88, 55-72.
32. Leblond-Bourget, N., Philippe, H., Mangin, I. & Decaris, B. (1996). 16S rRNA and 16S to 23S internal transcribed spacer sequence analyses reveal inter- and intraspecific Bifidobacterium phylogeny. Int J Syst Bacteriol 46, 102-111.
33. Loughney, K., Lund, E. & Dahlberg, J. E. (1982). tRNA genes are found between 16S and 23S rRNA genes in Bacillus subtilis. Nucleic Acids Res 10, 1607-1624.
34. Martínez-Murcia, A. J. & Collins, M. D. (1990). A phylogenetic analysis of the genus Leuconostoc based on reverse transcriptase sequencing of 16S rRNA. FEMS Microbiol Lett 70, 73-84.
35. Martínez-Murcia, A. J. & Collins, M. D. (1991). A phylogenetic analysis of an atypical leuconostoc: description of Leuconostoc fallax sp. nov. FEMS Microbiol Lett 82, 55-60.
36. Martínez-Murcia, A. J., Harland, N. M. & Collins, M. D. (1993). Phylogenetic analysis of some leuconostocs and related organisms as determined from large-subunit rRNA gene sequences: assessment of congruence of small- and large-subunit rRNA derived trees. J Appl Bacteriol 74, 532-541.
37. Matar, G. M., Swaminathan, B., Hunter, S. B., Slater, L. N. & Welch, D. F. (1993). Polymerase chain reaction-based restriction fragment length polymorphism analysis of a fragment of the ribosomal operon from Rochalimaea species for subtyping. J. Clin Microbiol 31, 1730-1734.
38. Mevarech, M., Hirschtwizer, S., Goldman, S., Yakobsson, E., Eisenberg, H. & Dennis, P. P. (1989). Isolation and characterization of the rRNA gene clusters of Halobacterium marismortui. J Bacteriol 171, 3479-3485.
39. Navarro, E., Simonet, P., Normand, P. & Bardin, R. (1992). Characterization of natural populations of Nitrobacter spp. using PCR/RFLP analysis of the ribosomal intergenic spacer. Arch Microbiol 157, 107-115.
40. Neefs, J. M., Van de Peer, Y., Hendriks, L. & DeWachter, R. (1990). Compilation of small ribosomal subunit RNA sequences. Nucleic Acids Res 18 (suppl.), 2237-2318.
41. Peynaud, E. & Domercq, S. (1968). Etude de quatre cents souches de conques heterolactiques isolés de vins. Ann Inst Pasteur 19, 159-169.
42. Regnery, R. L., Spruill, C. L. & Plakaytis, B. D. (1991). Genotypic identification of rickettsiae and estimation of intraspecies sequence divergence for portions of two rickettsial genes. J Bacteriol 173, 1576-1589.
43. Rossi, J., Costamagna, L. & Cleventi, F. (1978). La flora malolactica in alcuni vini dell'Italia centrole. Ann Fac Agrar Univ Stud Perugia 33, 187-196.
44. Sambrook, J., Fritsch, E. F. & Maniatis, M. (1989). Molecular Cloning: a Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
45. Sanger, F., Nicklen, S. & Coulsen, A. R. (1977). DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74, 5463-5467.
46. Sawada, M., Muto, A., Iwauni, M., Yamao, F. & Osawa, S. (1984). Organization of ribosomal RNA genes in Mycoplasma capricolum. Mol Gen Genet 196, 311-316.
47. Schillinger, U., Holzapfel, W. & Kandler, O. (1989). Nucleic acid hybridization studies on Leuconostoc and heterofermentative lactobacilli and description of Leuconostoc amelibiosum sp. nov. Syst Appl Microbiol 12, 48-55.
48. Sechl, L. A. & Daneo-Moore, L. (1993). Characterization of intergenic spacers in two rrn operons of Enterococcus birae ATCC 9790. J Bacteriol 175, 3212-3219.
49. Sela, S., Clark-Curtis, J. E. & Bercovier, H. (1989). Characterization and taxonomic implications of the rRNA genes of Mycobacterium leprae. J Bacteriol 17, 70-73.
50. Shaw, B. G. & Harding, C. D. (1989). Leuconostoc gelidum sp. nov. and Leuconostoc carnosum sp. nov. from chill-stored meats. Int J Syst Bacteriol 39, 217-223.
51. Southern, E. M. (1975). Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98, 503-517.
52. Susuki, Y., Yoshinaga, K., Ono, Y., Nagata, A. & Yamada, T. (1987). Organization of rRNA genes in Mycobacterium bovis BCG. J Bacteriol 169, 839-843.
53. Tenreiro, R., Santos, M. A., Paveia, H. & Vieira, G. (1994). Interstrain relationships among wine leuconostocs and their divergence from other Leuconostoc species, as revealed by low frequency restriction fragment analysis of genomic DNA. J Appl Bacteriol 77, 271-280.
54. Tracey, R. P. & Britz, T. J. (1987). A numerical taxonomy study of Leuconostoc oenos strains from wine. J Appl Bacteriol 63, 523-532.
55. Tracey, R. P. & Britz, T. J. (1989). Cellular fatty acid composition of Leuconostoc oenos. J Appl Bacteriol 66, 445-456.
56. Uemori, T., Asada, K., Kato, I. & Harasawa, R. (1992). Amplification of the 16S-23S spacer region in rRNA operons of Mycoplasmas by the polymerase chain reaction. Syst Appl Microbiol 15, 181-186.
57. Vilgalys, R. & Hester, M. (1990). Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172, 4238-4246.
58. de Wit, M. Y. L. & Klatser, P. R. (1994). Mycobacterium leprae isolates from different sources have identical sequences of the spacer region between the 16S and 23S ribosomal RNA genes. Microbiology 140, 1983-1987.
59. Yang, D. & Woese, C. R. (1989). Phylogenetic structure of the 'Leuconostocs': an interesting case of a rapidly evolving organism. Syst Appl Microbiol 12, 145-149.