Intraspecific genetic diversity of Oenococcus oeni as derived from DNA fingerprinting and sequence analyses

Applied and Environmental Microbiology

Volumn 63, Issue 4, 1997, Pages 1261-1267

  Zavaleta, Amparo I ^a   Martínez Murcia, Antonio J ^a   Rodríguez Valera, Francisco ^a  

^a UNIVERSITY OF ALICANTE   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DNA FINGERPRINTING; DNA SEQUENCE; FERMENTATION; GENETIC VARIABILITY; LEUCONOSTOC; NONHUMAN; OENOCOCCUS OENI; PLASMID; RANDOM AMPLIFIED POLYMORPHIC DNA; RIBOTYPING; WINE;

LEUCONOSTOC; OENOCOCCUS OENI;

EID: 0343907175     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.63.4.1261-1267.1997     Document Type: Article

References (42)

1. Beelman, R. B., A. Gavim III, and R. M. Keen. 1977. A new strain of Leuconostoc oenos for induced malolactic fermentation in eastern wines. Am. J. Enol. Vitic. 28:159-165.
2. Dicks, L. M. T., F. Dellaglio, and M. D. Collins. 1995. Proposal to reclassify Leuconostoc oenos as Oenococcus oeni [corrig.] gen. nov., comb. nov. Int. J. Syst. Bacteriol. 45:395-397.
3. Dicks, L. M. T., P. A. Loubser, and O. P. H. Augustyn. 1995. Identification of Leuconostoc oenos from South African fortified wines by numerical analysis of total soluble cell protein patterns and DNA-DNA hybridizations. J. Appl. Bacteriol. 79:43-48.
4. Dicks, L. M. T., H. J. J. van Vuuren, and F. Dellaglio. 1990. Taxonomy of Leuconostoc species, particularly Leuconostoc oenos, as revealed by numerical analysis of total soluble cell protein patterns, DNA base compositions, and DNA-DNA hybridizations. Int. J. Syst. Bacteriol. 40:83-91.
5. Farrow, J. A. E., R. R. Facklan, and M. D. Collins. 1989. Nucleic acid homologies of some vancomycin-resistant leuconostocs and description of Leuconostoc citreum sp. nov. and Leuconostoc pseudomesenteroides sp. nov. Int. J. Syst. Bacteriol. 39:279-283.
6. Fremaux, C., M. Aigle, and A. Lonvaud-Funel. 1993. Sequence analysis of Leuconostoc oenos DNA: organization of pLo13, a cryptic plasmid. Plasmid 30:212-223.
7. García-Martínez, J., A. J. Martínez-Murcia, F. Rodríguez-Valera, and A. Zorraquino. 1996. Molecular evidence supporting the existence of two major groups in uropathogenic Escherichia coli. FEMS Immunol. Med. Microbiol. 14:231-244.
8. Garvie, E. I. 1967. Leuconostoc oenos sp. nov. J. Gen. Microbiol. 48:431-438.
9. Garvie, E. I. 1969. Lactic dehydrogenases of strains of the genus Leuconostoc J. Gen. Microbiol. 58:85-94.
10. Garvie, E. I. 1976. Hybridization between the deoxyribonucleic acids of some strains of heterofermentative lactic acid bacteria. Int. J. Syst. Bacteriol. 26: 116-122.
11. Garvie, E. I. 1981. Sub-divisions within the genus Leuconostoc as shown by RNA/DNA hybridization. J. Gen. Microbiol. 127:209-212.
12. Garvie, E. I. 1986. Gram-positive cocci: genus Leuconostoc, p. 1071-1075. In P. H. A. Sneath, N. S. Mair, M. E. Sharpe, and J. G. Holt (ed.), Bergey's manual of systematic bacteriology, vol. 2. The Williams & Wilkins Co., Baltimore, Md.
13. Garvie, E. I., and J. A. E. Farrow. 1980. The differentiation of Leuconostoc oenos from non-acidophilic species of Leuconostoc, and the identification of five strains from the American Type Culture Collection. Am. J. Enol. Vitic. 31:154-157.
14. Hall, L. M. C. 1994. Are point mutations or DNA rearrangements responsible for the restriction fragment length polymorphisms that are used to type bacteria? Microbiology 14:197-204.
15. Hontebeyrie, M., and F. Gasser. 1977. Deoxyribonucleic acid homologies in the genus Leuconostoc. Int. J. Syst. Bacteriol. 27:9-14.
16. Janse B. J. H., B. D. Wingfield, I. S. Pretorius, and H. J. J. van Vuuren. 1987. Plasmids in Leuconostoc oenos. Plasmid 17:173-175.
17. Karaolis, D. K. R., R. Lan, and P. R. Reeves. 1995. The sixth and seventh cholera pandemics are due to independent clones separately derived from environmental, nontoxigenic, non-O1 Vibrio cholerae. J. Bacteriol. 177:3191-3198.
18. Kunkee, R. E. 1991. Some roles of malic acid in the malolactic fermentation in wine making. FEMS Microbiol. Rev. 88:55-72.
19. Lawrence, L. M., and A. Gilmour. 1995. Characterization of Listeria monocytogenes isolated from poultry products and from the poultry-processing environment by random amplification of polymorphic DNA and multilocus enzyme electrophoresis. Appl. Environ. Microbiol. 61:2139-2144.
20. Martinez-Murcia, A. J., and M. D. Collins. 1990. A phylogenetic analysis of the genus Leuconostoc based on reverse transcriptase sequencing of 16S rRNA. FEMS Microhiol. Lett. 70:73-84.
21. Martinez-Murcia, A. J., and M. D. Collins. 1991. A phylogenetic analysis of an atypical leuconostoc: description of Leuconostoc fallax sp. nov. FEMS Microbiol. Lett. 82:55-60.
22. Martinez-Murcia, A. J., N. M. Harland, and M. D. Collins. 1993. Phylogenetic analysis of some leuconostocs and related organisms as determined from large-subunit rRNA gene sequences: assessment of congruence of small- and large-subunit rRNA derived trees. J. Appl. Bacteriol. 74:532-541.
23. Martinez-Murcia, A. J., and F. Rodríguez-Valera. 1994. Random amplified polymorphic DNA of a group of halophilic archaeal isolates. Syst. Appl. Microbiol. 17:395-401.
24. Martinez-Murcia, A. J., and F. Rodríguez-Valera. 1994. The use of arbitrarily primed PCR (AP-PCR) to develop taxa specific DNA probes of known sequence. FEMS Microbiol. Lett. 124:265-270.
25. Martinez-Murcia, A. J., I. F. Boan, and F. Rodríguez-Valera. 1995. Evaluation of the authenticity of haloarchaeal strains by random-amplified polymorphic DNA. Lett. Appl. Microbiol. 21:106-108.
26. Ménard, C., and C. Mouton. 1995. Clonal diversity of the taxon Porphyromonas gingivalis assessed by random amplified polymorphic DNA fingerprinting. Infect. Immun. 63:2522-2531.
27. Pearson, W. R., and D. J. Lipman. 1988. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85:2444-2448.
28. Sambrook, J., E. F. Fritsch, and M. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
29. Sanger, F., S. Nicklen, and A. R. Coulsen. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74:5463-5467.
30. Schillinger, U., W. Holzapfel, and O. Kandler. 1989. Nucleic acid hybridization studies on Leuconostoc and heterofermentative lactobacilli and description of Leuconostoc amelibiosum sp. nov. Syst. Appl. Microbiol. 12:48-55.
31. Selander, R. K., J. Li, E. F. Boyd, F. Wang, and K. Nelson. 1994. DNA sequence analysis of the genetic structure of population of Salmonella enterica and Escherichia coli, p. 17-49. In F. G. Priest, A. Ramos-Cormenzana, and B. J. Tindall (ed.), Bacterial diversity and systematics. Plenum Press, New York, N.Y.
32. Shaw, B. G., and C. D. Harding. 1989. Leuconostoc gelidum sp. nov. and Leuconostoc carnosum sp. nov. from chill-stored meats. Int. J. Syst. Bacteriol. 39:217-223.
33. Southern, E. M. 1975. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol. 98:503-517.
34. Tenreiro, R., M. A. Santos, H. Paveia, and G. Vieira. 1994. Inter-strain relationships among wine leuconostocs and their divergence from other Leuconostoc species, as revealed by low frequency restriction fragment analysis of genomic DNA. J. Appl. Bacteriol. 77:271-280.
35. Tracey, R. P., and T. J. Britz. 1987. A numerical taxonomy study of Leuconostoc oenos strains from wine. J. Appl. Bacteriol. 63:523-532.
36. Tracey, R. P., and T. J. Britz. 1989. Cellular fatty acid composition of Leuconostoc oenos. J. Appl. Bacteriol. 66:445-456.
37. Van Belkum, A. 1994. DNA fingerprinting of medically important microorganisms by use of PCR. Clin. Microbiol. Rev. 7:174-184.
38. Vandenesch, F., J. Perrier-Gros-Claude, M. Bes, C. Fuhrmann, V. Delorme, C. Mouren, and J. Etienne. 1995. Staphylococcus pasteuri-specific oligonucleotide probes derived from random amplified DNA fragment. FEMS Microbiol. Lett. 132:147-152.
39. Welsh, J., and M. MacLeland. 1990. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18:7213-7218.
40. Williams, J. G. K., A. R. Kubelik, and K. J. Livak. 1990. DNA polymorphisms amplified by arbitrary primers arc useful as genetic markers. Nucleic Acids Res. 18:6531-6535.
41. Yang, D., and C. R. Woese. 1989. Phylogenetic structure of the "leuconostocs": an interesting case of a rapidly evolving organism. Syst. Appl. Microbiol. 12:145-149.
42. Zavaleta, A. I., A. J. Martínez-Murcia, and F. Rodríguez-Valera. 1996. 16S-23S rDNA intergenic sequences indicate that Leuconostoc oenos is phylogenetically homogeneous. Microbiology 142:2105-2114.