A novel molecular method for identification of Oenococcus oeni and its specific detection in wine

International Journal of Food Microbiology

Volumn 142, Issue 1-2, 2010, Pages 251-255

  Marques, Ana P ^a   Zé Zé, Líbia ^b,d   San Romão, Maria Vitória ^a,c   Tenreiro, Rogério ^b  

^a INSTITUTO DE TECNOLOGIA QUÍMICA E BIOLÓGICA   (Portugal)

^b UNIVERSITY OF LISBON   (Portugal)

^c Instituto Nacional de Recursos Biologicos   (Portugal)

^d NATIONAL INSTITUTE OF HEALTH DR RICARDO JORGE   (Portugal)

Author keywords

16S rRNA gene; ARDRA; Molecular identification; Oenococcus oeni

Indexed keywords

ENDONUCLEASE; ENDONUCLEASE FSE1; RNA 16S; UNCLASSIFIED DRUG;

ARTICLE; BACTERIUM DETECTION; BACTERIUM IDENTIFICATION; DNA EXTRACTION; DNA PURIFICATION; GENE AMPLIFICATION; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; OENOCOCCUS OENI; ROOM TEMPERATURE; SEQUENCE ALIGNMENT; WINE;

BACTERIAL PROTEINS; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA PRIMERS; DNA, BACTERIAL; NUCLEIC ACID AMPLIFICATION TECHNIQUES; OENOCOCCUS; RNA, RIBOSOMAL, 16S; SPECIES SPECIFICITY; WINE;

OENOCOCCUS OENI;

EID: 77955653374     PISSN: 01681605     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijfoodmicro.2010.06.006     Document Type: Article

References (28)

1. Blasco L., Ferrer S., Pardo I. Development of specific fluorescent oligonucleotide probes for in situ identification of lactic acid bacteria. FEMS Microbiology Letters 2003, 225:115-123.
2. Bousbouras G.E., Kunkee R.E. Effect of pH on malolactic fermentation in wine. American Journal of Enology and Viticulture 1971, 22:121-126.
3. Claisse O., Renouf V., Lonvaud-Funel A. Differentiation of wine lactic acid bacteria species based on RFLP analysis of a partial sequence of rpoB gene. Journal of Microbiological Methods 2007, 69:387-390.
4. Costello P.J., Morrison R.H., Lee R.H., Fleet G.H. Numbers and species of lactic acid bacteria in wines during vinification. Food Technology in Australia 1983, 35:14-18.
5. Davis C.R., Wibowo D., Fleet G.H., Lee T.H. Properties of wine lactic acid bacteria: their potential enological significance. American Journal of Enology and Viticulture 1988, 39:137-142.
6. de Revel G., Martin N., Pripis-Nicolau L., Lonvaud-Funel A., Bertrand A. Contribution to the knowledge of malolactic fermentation influence on wine aroma. Journal of Agricultural and Food Chemistry 1999, 47:4003-4008.
7. Endo A., Okada S. Oenococcus kitaharae sp. nov., a non-acidophilic and non-malolactic-fermenting oenococcus isolated from a composting distilled shochu residue. International Journal of Systematic and Evolutionary Microbiology 2006, 56:2345-2348.
8. Hall T.A. BioEdit: a user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acid Symposium Series 1999, 41:95-98.
9. Jara C., Mateo E., Guillamón J.M., Torija M.J., Mas A. Analysis of several methods for the extraction of high quality DNA from acetic acid bacteria in wine and vinegar for characterization by PCR-based methods. International Journal of Food Microbiology 2008, 128:336-341.
10. Lafon-Lafourcade S., Carre E., Ribereau-Gayon P. Occurrence of lactic acid bacteria during the different stages of vinification and conservation of wines. Applied and Environmental Microbiology 1983, 46:874-880.
11. Lonvaud M., Lonvaud-Funel A., Ribereau-Gayon P. Le mecanisme de la fermentation malolactique des vins. Connaissance de la Vigne et du Vin 1977, 11:73-91.
12. Lonvaud-Funel A. Lactic acid bacteria in the quality improvement and depreciation of wine. Antonie van Leeuwenhoek 1999, 76:317-331.
13. Lonvaud-Funel A., Joyeux A., Ledoux O. Specific enumeration of lactic acid bacteria in fermenting grape must and wine by hybridization with non isotopic DNA probes. Journal of Applied Bacteriology 1991, 71:501-508.
14. Lopez I., Ruiz-Larrea F., Cocolin L., Orr E., Phister T., Marshall M., VanderGheynst J., Mills D.A. Design and evaluation of PCR primers for analysis of bacterial populations in wine by denaturing gradient gel electrophoresis. Applied and Environmental Microbiology 2003, 69:6801-6807.
15. Pinzani P., Bonciani L., Pazzagli M., Orlando C., Guerrini S., Granchi L. Rapid detection of Oenococcus oeni in wine by real-time quantitative PCR. Letters in Applied Microbiology 2004, 38:118-124.
16. Renouf V., Claisse O., Lonvaud-Funel A. rpoB gene: a target for identification of LAB cocci by PCR-DGGE and melting curves analyses in real time PCR. Journal of Microbiological Methods 2006, 67:162-170.
17. Renouf V., Claisse O., Miot-Sertier C., Lonvaud-Funel A. Lactic acid bacteria evolution during winemaking: use of rpoB gene as a target for PCR-DGGE analysis. Food Microbiology 2006, 23:136-145.
18. Ribereau-Gayon P., Dubourdieu D., Donèche B., Lonvaud A. The microbiology of wine and vinifications. Handbook of Enology 2006, vol. 1:497. John Wiley & Sons Ltd, Chichester. 2nd ed.
19. Ribereau-Gayon P., Glories Y., Maujean A., Dubourdieu D. The chemistry of wine, stabilization and treatments. Handbook of Enology 2006, vol. 2:441. John Wiley & Sons Ltd, Chichester. 2nd ed.
20. Sato H., Yanagida F., Shinohara T., Yokosutka K. Restriction fragment length polymorphism analysis of 16S rRNA genes in lactic acid bacteria isolated from red wines. Journal of Bioscience and Bioengineering 2000, 3:335-337.
21. Sato H., Yanagida F., Shinohara T., Suzuki M., Suzuki K., Yokotsuka K. Intraspecific diversity Oenococcus oeni isolated during red wine-making in Japan. FEMS Microbiology Letters 2001, 202:109-114.
22. Spano G., Lonvaud-Funel A., Claisse O., Massa S. In vivo PCR-DGGE analysis of Lactobacillus plantarum and Oenococcus oeni populations in red wine. Current Microbiology 2007, 54:9-13.
23. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Research 1994, 22:4673-4680.
24. Ulrike E., Rogall T., Blocker H., Emde M., Bottger E.C. Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Research 1989, 17:7843-7853.
25. Zapparoli G., Torriani S., Pesente P., Dellaglio F. Design and evaluation of malolactic enzyme gene targeted primers for rapid identification and detection of Oenococcus oeni in wine. Letters in Applied Microbiology 1998, 27:243-246.
26. Zé-Zé L., Tenreiro R., Brito L., Santos M.A., Paveia H. Physical map of the genome of Oenococcus oeni PSU-1 and localization of genetic markers. Microbiology 1998, 144:1145-1156.
27. Zé-Zé L., Tenreiro R., Paveia H. The Oenococcus oeni genome: physical and genetic mapping of strain GM and comparison with the genome of a 'divergent' strain, PSU-1. Microbiology 2000, 146:3195-3204.
28. Zé-Zé L., Chelo I.M., Tenreiro R. Genome organization in Oenococcus oeni strains studied by comparison of physical and genetic maps. International Microbiology 2008, 11:237-244.