-
1
-
-
0036085460
-
Cellular roles of DNA topoisomerases: A molecular perspective
-
Wang, J.C. (2002) Cellular roles of DNA topoisomerases: a molecular perspective. Nature Rev., 3, 430-440.
-
(2002)
Nature Rev.
, vol.3
, pp. 430-440
-
-
Wang, J.C.1
-
2
-
-
64649105115
-
DNA topoisomerase II and its growing repertoire of biological functions
-
Nittis, J.L. (2009) DNA topoisomerase II and its growing repertoire of biological functions. Nature Rev. Cancer, 9, 327-337.
-
(2009)
Nature Rev. Cancer
, vol.9
, pp. 327-337
-
-
Nittis, J.L.1
-
3
-
-
63349102030
-
Phylogenomics of DNA topoisomerases: Their origin and putative roles in the emergence of modern organisms
-
Forterre, P. and Gadelle, D. (2009) Phylogenomics of DNA topoisomerases: their origin and putative roles in the emergence of modern organisms. Nucleic Acids Res., 37, 679-692.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 679-692
-
-
Forterre, P.1
Gadelle, D.2
-
4
-
-
2442599792
-
Structure, molecular mechanisms, and evolutionary relationships in DNA topoisomerases
-
Corbett, K.D. and Berger, J.M. (2004) Structure, molecular mechanisms, and evolutionary relationships in DNA topoisomerases. Annu. Rev. Biophys. Biomol. Struct., 33, 95-118.
-
(2004)
Annu. Rev. Biophys. Biomol. Struct.
, vol.33
, pp. 95-118
-
-
Corbett, K.D.1
Berger, J.M.2
-
5
-
-
28844455588
-
Recent advances in understanding structure-function relationships in the type II topoisomerase mechanism
-
Schoeffler, A.J. and Berger, J.M. (2005) Recent advances in understanding structure-function relationships in the type II topoisomerase mechanism. Biochem. Soc. Trans., 33, 1465-1470.
-
(2005)
Biochem. Soc. Trans.
, vol.33
, pp. 1465-1470
-
-
Schoeffler, A.J.1
Berger, J.M.2
-
6
-
-
77953237570
-
The role of ATP in the reactions of type DNA topoisomerases
-
Bates, A.D. and Maxwell, A. (2010) The role of ATP in the reactions of type DNA topoisomerases. Biochem. Soc. Trans., 38, 438-442.
-
(2010)
Biochem. Soc. Trans.
, vol.38
, pp. 438-442
-
-
Bates, A.D.1
Maxwell, A.2
-
7
-
-
0033587704
-
A model for the mechanism of strand passage by DNA gyrase
-
Kampranis, S.C., Bates, A.D. and Maxwell, A. (1999) A model for the mechanism of strand passage by DNA gyrase. Proc. Natl Acad. Sci. USA, 96, 8414-8419.
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 8414-8419
-
-
Kampranis, S.C.1
Bates, A.D.2
Maxwell, A.3
-
8
-
-
2942528667
-
The path of DNA along the dimer interface of topoisomerase II
-
Roca, J. (2004) The path of DNA along the dimer interface of topoisomerase II. J. Biol. Chem., 279, 25783-25788.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 25783-25788
-
-
Roca, J.1
-
9
-
-
47749137356
-
Coupling between ATP binding and DNA cleavage by DNA topoisomerase II. A unifying kinetic and structural mechanism
-
Mueller-Planiz, F. and Hershlag, D. (2008) Coupling between ATP binding and DNA cleavage by DNA topoisomerase II. A unifying kinetic and structural mechanism. J. Biol. Chem., 283, 17463-17476.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 17463-17476
-
-
Mueller-Planiz, F.1
Hershlag, D.2
-
10
-
-
37549023863
-
Structural basis for gate-DNA recognition and bending by type IIA topoisomerases
-
Dong, K.C. and Berger, J.M. (2007) Structural basis for gate-DNA recognition and bending by type IIA topoisomerases. Nature, 450, 1201-1206.
-
(2007)
Nature
, vol.450
, pp. 1201-1206
-
-
Dong, K.C.1
Berger, J.M.2
-
11
-
-
77953229439
-
A novel and unified two-metal mechanism for DNA cleavage by type II and IA topoisomerases
-
Schmidt, B.H., Burgin, A.B., Deweese, J.E., Osheroff, N. and Berger, J.M. (2010) A novel and unified two-metal mechanism for DNA cleavage by type II and IA topoisomerases. Nature, 465, 641-644.
-
(2010)
Nature
, vol.465
, pp. 641-644
-
-
Schmidt, B.H.1
Burgin, A.B.2
Deweese, J.E.3
Osheroff, N.4
Berger, J.M.5
-
12
-
-
67349272340
-
Structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerases
-
Laponogov, I., Sohi, M.K., Veselkov, D.A., Pan, X.S., Sawhney, R., Thompson, A.W., McAuley, K.E., Fisher, L.M. and Sanderson, M.R. (2009) Structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerases. Nat. Struct. Mol. Biol., 16, 667-669.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 667-669
-
-
Laponogov, I.1
Sohi, M.K.2
Veselkov, D.A.3
Pan, X.S.4
Sawhney, R.5
Thompson, A.W.6
McAuley, K.E.7
Fisher, L.M.8
Sanderson, M.R.9
-
13
-
-
77955334540
-
Structural basis of gate-DNA breakage and resealing by type II topoisomerases
-
Laponogov, I., Pan, X.S., Veselkov, D.A., McAuley, K.E., Fisher, L.M. and Sanderson, M.R. (2010) Structural basis of gate-DNA breakage and resealing by type II topoisomerases. PLoS One, 2010 5:e11338.
-
(2010)
PLoS One, 2010
, vol.5
-
-
Laponogov, I.1
Pan, X.S.2
Veselkov, D.A.3
McAuley, K.E.4
Fisher, L.M.5
Sanderson, M.R.6
-
14
-
-
77955917935
-
Type IIA topoisomerase inhibition by a new class of antibacterial agents
-
Bax, B.D., Chan, P.F., Eggleston, D.S., Fosberry, A., Gentry, D.R., Gorrec, F., Giordano, I., Hann, M.M., Hennessy, A., Hibbs, M. et al. (2010) Type IIA topoisomerase inhibition by a new class of antibacterial agents. Nature, 466, 935-940.
-
(2010)
Nature
, vol.466
, pp. 935-940
-
-
Bax, B.D.1
Chan, P.F.2
Eggleston, D.S.3
Fosberry, A.4
Gentry, D.R.5
Gorrec, F.6
Giordano, I.7
Hann, M.M.8
Hennessy, A.9
Hibbs, M.10
-
15
-
-
77956343814
-
Structural basis of quinolone inhibition of type IIA topoisomerases and target-mediated resistance
-
Wohlkonig, A., Chan, P.F., Fosberry, A.P., Homes, P., Huang, J., Kranz, M., Leydon, V.R., Miles, T.J., Pearson, N.D., Perera, R.L. et al. (2010) Structural basis of quinolone inhibition of type IIA topoisomerases and target-mediated resistance. Nat. Struct. Mol. Biol., 17, 1152-1153.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1152-1153
-
-
Wohlkonig, A.1
Chan, P.F.2
Fosberry, A.P.3
Homes, P.4
Huang, J.5
Kranz, M.6
Leydon, V.R.7
Miles, T.J.8
Pearson, N.D.9
Perera, R.L.10
-
16
-
-
34447136857
-
Holoenzyme assembly and ATP-mediated conformational dynamics of topoisomerase VI
-
Corbett, K.D., Benedetti, P. and Berger, J.M. (2007) Holoenzyme assembly and ATP-mediated conformational dynamics of topoisomerase VI. Nat. Struct. Mol. Biol., 14, 611-619.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 611-619
-
-
Corbett, K.D.1
Benedetti, P.2
Berger, J.M.3
-
17
-
-
40049090181
-
Crystal structure of an intact type II DNA topoisomerase: Insight into DNA transfer mechanisms
-
Graille, M., Cladie re, L., Durand, D., Lecointe, F., Gadelle, D., Quevillon-Cheruel, S., Vachette, P., Forterre, P. and van Tilbeurgh, H. (2008) Crystal structure of an intact type II DNA topoisomerase: insight into DNA transfer mechanisms. Structure, 16, 360-370.
-
(2008)
Structure
, vol.16
, pp. 360-370
-
-
Graille, M.1
Cladiere, L.2
Durand, D.3
Lecointe, F.4
Gadelle, D.5
Quevillon-Cheruel, S.6
Vachette, P.7
Forterre, P.8
Van Tilbeurgh, H.9
-
18
-
-
0033229826
-
Structure and function of an archaeal topoisomerase VI subunit with homology to the meiotic recombination factor Spo11
-
Nichols, M.D., DeAngelis, K., Keck, J.L. and Berger, J.M. (1999) Structure and function of an archaeal topoisomerase VI subunit with homology to the meiotic recombination factor Spo11. EMBO J., 18, 6177-6188.
-
(1999)
EMBO J.
, vol.18
, pp. 6177-6188
-
-
Nichols, M.D.1
Deangelis, K.2
Keck, J.L.3
Berger, J.M.4
-
19
-
-
0035902590
-
Topological challenges to DNA replication: Conformations at the fork
-
Postow, L., Crisona, N.J., Peter, B.J., Hardy, C.D. and Cozzarelli, N.R. (2001) Topological challenges to DNA replication: conformations at the fork. Proc. Natl Acad. Sci. USA, 98, 8219-8226.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 8219-8226
-
-
Postow, L.1
Crisona, N.J.2
Peter, B.J.3
Hardy, C.D.4
Cozzarelli, N.R.5
-
20
-
-
2942556663
-
DNA axial rotation and the merge of oppositely supercoiled DNA domains in Escherichia coli: Effects of DNA bends
-
Stupina, V. and Wang, J.C. (2004) DNA axial rotation and the merge of oppositely supercoiled DNA domains in Escherichia coli: Effects of DNA bends. Proc. Natl Acad. Sci. USA, 101, 8608-8613.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 8608-8613
-
-
Stupina, V.1
Wang, J.C.2
-
21
-
-
3142695077
-
Untangling intracellular DNA topology
-
Espeli, O. and Marians, K.J. (2004) Untangling intracellular DNA topology. Mol. Microbiol., 52, 925-931.
-
(2004)
Mol. Microbiol.
, vol.52
, pp. 925-931
-
-
Espeli, O.1
Marians, K.J.2
-
22
-
-
0000576165
-
DNA gyrase: An enzyme that introduces superhelical turns into DNA
-
Gellert, M., Mizuuchi, K., O'Dea, M.H. and Nash, H.A. (1976) DNA gyrase: an enzyme that introduces superhelical turns into DNA. Proc. Natl Acad. Sci. USA, 73, 3872-3878.
-
(1976)
Proc. Natl Acad. Sci. USA
, vol.73
, pp. 3872-3878
-
-
Gellert, M.1
Mizuuchi, K.2
O'Dea, M.H.3
Nash, H.A.4
-
23
-
-
0035890272
-
Topoisomerase II can unlink replicating DNA by precatenane removal
-
Lucas, I., Germe, T., Chevrier-Miller, M. and Hyrien, O. (2001) Topoisomerase II can unlink replicating DNA by precatenane removal. EMBO J., 20, 6509-6519.
-
(2001)
EMBO J.
, vol.20
, pp. 6509-6519
-
-
Lucas, I.1
Germe, T.2
Chevrier-Miller, M.3
Hyrien, O.4
-
24
-
-
33947265929
-
A common topology for bacterial and eukaryotic transcription initiation?
-
Travers, A. and Muskhelishvili, G. (2007) A common topology for bacterial and eukaryotic transcription initiation? EMBO Rep., 8, 147-151.
-
(2007)
EMBO Rep.
, vol.8
, pp. 147-151
-
-
Travers, A.1
Muskhelishvili, G.2
-
25
-
-
0024826968
-
Preferential, cooperative binding of DNA topoisomerase II to scaffold-associated regions
-
Adachi, Y., Kas, E. and Laemmli, U.K. (1989) Preferential, cooperative binding of DNA topoisomerase II to scaffold-associated regions. EMBO J., 8, 3997-4006.
-
(1989)
EMBO J.
, vol.8
, pp. 3997-4006
-
-
Adachi, Y.1
Kas, E.2
Laemmli, U.K.3
-
26
-
-
0040860278
-
In situ localization of DNA topoisomerase II, a major polypeptide component of the Drosophila nuclear matrix fraction
-
Berrios, M., Osheroff, N. and Fisher, P.A. (1985) In situ localization of DNA topoisomerase II, a major polypeptide component of the Drosophila nuclear matrix fraction. Proc. Natl Acad. Sci. USA, 82, 4142-4146.
-
(1985)
Proc. Natl Acad. Sci. USA
, vol.82
, pp. 4142-4146
-
-
Berrios, M.1
Osheroff, N.2
Fisher, P.A.3
-
27
-
-
0023050122
-
Cohabitation of scaffold binding regions with upstream/enhancer elements of three developmentally regulated genes of D. melanogaster
-
Gasser, S.M. and Laemmli, U.K. (1986) Cohabitation of scaffold binding regions with upstream/enhancer elements of three developmentally regulated genes of D. melanogaster. Cell, 46, 521-530.
-
(1986)
Cell
, vol.46
, pp. 521-530
-
-
Gasser, S.M.1
Laemmli, U.K.2
-
28
-
-
33750844590
-
Mitotic chromosome structure and condensation
-
Belmont, A. (2006) Mitotic chromosome structure and condensation Curr. Opin. Cell. Biol., 18, 632-638.
-
(2006)
Curr. Opin. Cell. Biol.
, vol.18
, pp. 632-638
-
-
Belmont, A.1
-
29
-
-
0345060775
-
Building and breaking bridges between sister chromatids
-
Haering, C.H. and Nasmyth, K. (2003) Building and breaking bridges between sister chromatids. Bioessays, 25, 1178-1191.
-
(2003)
Bioessays
, vol.25
, pp. 1178-1191
-
-
Haering, C.H.1
Nasmyth, K.2
-
30
-
-
0037349338
-
The making of the mitotic chromosomes: Modern insights into classical questions
-
Swedlow, J.R. and Hirano, T. (2003) The making of the mitotic chromosomes: modern insights into classical questions. Mol. Cell, 11, 557-569.
-
(2003)
Mol. Cell
, vol.11
, pp. 557-569
-
-
Swedlow, J.R.1
Hirano, T.2
-
31
-
-
13544254815
-
Topoisomerase II: Untangling its contribution at the centromere
-
Porter, C.G. and Farr, C.J. (2004) Topoisomerase II: untangling its contribution at the centromere. Chrom. Res., 12, 569-583.
-
(2004)
Chrom. Res.
, vol.12
, pp. 569-583
-
-
Porter, C.G.1
Farr, C.J.2
-
32
-
-
34250317372
-
Topoisomerase II, scaffold component, promotes chromatin compaction in vitro in a linker-histone H1-dependent manner
-
Hizume, K., Araki, S., Yoshikawa, K. and Takeyasu, K. (2007) Topoisomerase II, scaffold component, promotes chromatin compaction in vitro in a linker-histone H1-dependent manner. Nucleic Acids Res., 35, 2787-2799.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 2787-2799
-
-
Hizume, K.1
Araki, S.2
Yoshikawa, K.3
Takeyasu, K.4
-
33
-
-
33745179903
-
Distribution of gyrase and topoisomerase IV on bacterial nucleoid: Implications for nucleoid organization
-
Hsu, Y.H., Chung, M.W. and Li, T.K. (2006) Distribution of gyrase and topoisomerase IV on bacterial nucleoid: implications for nucleoid organization. Nucleic Acids Res., 34, 3128-3138.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 3128-3138
-
-
Hsu, Y.H.1
Chung, M.W.2
Li, T.K.3
-
34
-
-
0034305363
-
New genes with old modus operandi. The connection between supercoiling and partitioning of DNA in Escherichia coli
-
Dasgupta, S., Maisnier-Patin, S. and Nordstrom, K. (2000) New genes with old modus operandi. The connection between supercoiling and partitioning of DNA in Escherichia coli. EMBO Rep., 1, 323-327.
-
(2000)
EMBO Rep.
, vol.1
, pp. 323-327
-
-
Dasgupta, S.1
Maisnier-Patin, S.2
Nordstrom, K.3
-
35
-
-
0030875771
-
Of Topo and Maxwell's dream
-
Pulleyblank, D.E. (1997) Of Topo and Maxwell's dream. Science, 277, 648-649.
-
(1997)
Science
, vol.277
, pp. 648-649
-
-
Pulleyblank, D.E.1
-
36
-
-
0030758268
-
Simplification of DNA topology below equilibrium values by type II topoisomerases
-
Rybenkov, V.V., Ullsperger, C., Vologodskii, A.V. and Cozzarelli, N.R. (1997) Simplification of DNA topology below equilibrium values by type II topoisomerases. Science, 277, 690-693.
-
(1997)
Science
, vol.277
, pp. 690-693
-
-
Rybenkov, V.V.1
Ullsperger, C.2
Vologodskii, A.V.3
Cozzarelli, N.R.4
-
37
-
-
67249099763
-
Theoretical models of topology simplification by type IIA DNA topoisomerases
-
Vologodskii, A. (2009) Theoretical models of topology simplification by type IIA DNA topoisomerases. Nucleic Acid Res., 37, 3125-3133.
-
(2009)
Nucleic Acid Res.
, vol.37
, pp. 3125-3133
-
-
Vologodskii, A.1
-
38
-
-
63349102536
-
The why and how DNA unlinking
-
Liu, Z., Deibler, R.W., Chan, H.S. and Zechiedrich, L. (2009) The why and how DNA unlinking. Nucleic Acid Res., 37, 661-671.
-
(2009)
Nucleic Acid Res.
, vol.37
, pp. 661-671
-
-
Liu, Z.1
Deibler, R.W.2
Chan, H.S.3
Zechiedrich, L.4
-
39
-
-
0035853134
-
Mechanism of topology simplification by type II DNA topoisomerase
-
Vologodskii, A.V., Zhang, W., Rybenkov, V., Podtelezhnikov, A.A., Subramanian, D., Griffith, J.D. and Cozzarelli, N.R. (2001) Mechanism of topology simplification by type II DNA topoisomerase. Proc. Natl Acad. Sci. USA, 98, 3045-3049.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 3045-3049
-
-
Vologodskii, A.V.1
Zhang, W.2
Rybenkov, V.3
Podtelezhnikov, A.A.4
Subramanian, D.5
Griffith, J.D.6
Cozzarelli, N.R.7
-
40
-
-
1542501878
-
Asymmetric removal of supercoils suggests how topoisomerase II simplifies DNA topology
-
Trigueros, S., Salceda, J., Bermudez, I., Fernandez, X. and Roca, J. (2004) Asymmetric removal of supercoils suggests how topoisomerase II simplifies DNA topology. J. Mol. Biol., 335, 723-731.
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 723-731
-
-
Trigueros, S.1
Salceda, J.2
Bermudez, I.3
Fernandez, X.4
Roca, J.5
-
41
-
-
0033613387
-
A kinetic proofreading mechanism for disentanglement of DNA by topoisomerases
-
Yan, J., Magnasco, M.O. and Marko, J.F. (1999) A kinetic proofreading mechanism for disentanglement of DNA by topoisomerases. Nature, 401, 932-935.
-
(1999)
Nature
, vol.401
, pp. 932-935
-
-
Yan, J.1
Magnasco, M.O.2
Marko, J.F.3
-
42
-
-
33746253988
-
Topological information embodied in local juxtaposition geometry provides a statistical mechanical basis for unknotting by type-2 DNA topoisomerases
-
Liu, Z., Mann, J.K., Zechiedrich, E.L. and Chan, H.S. (2006) Topological information embodied in local juxtaposition geometry provides a statistical mechanical basis for unknotting by type-2 DNA topoisomerases. J. Mol. Biol., 361, 268-285.
-
(2006)
J. Mol. Biol.
, vol.361
, pp. 268-285
-
-
Liu, Z.1
Mann, J.K.2
Zechiedrich, E.L.3
Chan, H.S.4
-
43
-
-
3242754359
-
DNA disentangling by type-2 topoisomerases
-
Buck, G.R. and Zechiedrich, E.L. (2004) DNA Disentangling by Type-2 Topoisomerases. J. Mol. Biol., 340, 933-939.
-
(2004)
J. Mol. Biol.
, vol.340
, pp. 933-939
-
-
Buck, G.R.1
Zechiedrich, E.L.2
-
44
-
-
33645279594
-
Electrostatics of DNA-DNA juxtapositions: Consequences for type II topoisomerase function
-
Randall, G.L., Pettitt, B.M., Buck, G.R. and Zechiedriech, E.L. (2006) Electrostatics of DNA-DNA juxtapositions: consequences for type II topoisomerase function. J. Phys. Condens. Matter, 18, S173-S185.
-
(2006)
J. Phys. Condens. Matter
, vol.18
-
-
Randall, G.L.1
Pettitt, B.M.2
Buck, G.R.3
Zechiedriech, E.L.4
-
45
-
-
58549101862
-
How do type II topoisomerases use ATP hydrolysis to simplify DNA topology beyond equilibrium? Investigating the relaxation reaction of non supercoiling type II topoisomerases
-
Stuchinskaya, T., Mitchenall, L.A., Schoeffler, A.J., Corbett, K.D., Berger, J.M., Bates, A.D. and Maxwell, A. (2009) How do type II topoisomerases use ATP hydrolysis to simplify DNA topology beyond equilibrium? Investigating the relaxation reaction of non supercoiling type II topoisomerases. J. Mol. Biol., 385, 1397-1408.
-
(2009)
J. Mol. Biol.
, vol.385
, pp. 1397-1408
-
-
Stuchinskaya, T.1
Mitchenall, L.A.2
Schoeffler, A.J.3
Corbett, K.D.4
Berger, J.M.5
Bates, A.D.6
Maxwell, A.7
-
46
-
-
0031043014
-
Chirality of DNA trefoils: Implications in intramolecular synapsis of distant DNA segments
-
Shaw, S. and Wang, J.C. (1997) Chirality of DNA trefoils: implications in intramolecular synapsis of distant DNA segments. Proc. Natl Acad. Sci. USA, 94, 1692-1697.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 1692-1697
-
-
Shaw, S.1
Wang, J.C.2
-
47
-
-
0034669232
-
Preferential relaxation of positively supercoiled DNA by E. coli topoisomerase IV in single-molecule and ensemble measurements
-
Crisona, N.J., Strick, T.R., Bensimon, D., Croquette, V. and Cozzarelli, N.R. (2000) Preferential relaxation of positively supercoiled DNA by E. coli topoisomerase IV in single-molecule and ensemble measurements. Gene Dev., 14, 2881-2892.
-
(2000)
Gene Dev.
, vol.14
, pp. 2881-2892
-
-
Crisona, N.J.1
Strick, T.R.2
Bensimon, D.3
Croquette, V.4
Cozzarelli, N.R.5
-
48
-
-
34247185768
-
Multiple modes of Escherichia coli DNA gyrase activity revealed by force and torque
-
Nollmann, N., Stone, M.D., Bryant, Z., Gore, J., Crisona, N.J., Hong, S.C., Mitelheiser, S., Maxwell, A., Bustamante, C. and Cozzarelli, N.R. (2007) Multiple modes of Escherichia coli DNA gyrase activity revealed by force and torque. Nat. Struct. Mol. Biol., 14, 264-271.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 264-271
-
-
Nollmann, N.1
Stone, M.D.2
Bryant, Z.3
Gore, J.4
Crisona, N.J.5
Hong, S.C.6
Mitelheiser, S.7
Maxwell, A.8
Bustamante, C.9
Cozzarelli, N.R.10
-
49
-
-
28244433817
-
Human topoisomerase IIa rapidly relaxes positively supercoiled DNA. Implications for enzyme action ahead of replication forks
-
McClendon, A.K., Rodriguez, A.C. and Osheroff, N. (2005) Human topoisomerase IIa rapidly relaxes positively supercoiled DNA. Implications for enzyme action ahead of replication forks. J. Biol. Chem., 280, 39337-39345.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 39337-39345
-
-
McClendon, A.K.1
Rodriguez, A.C.2
Osheroff, N.3
-
50
-
-
22544467771
-
The structural basis for substrate specificity in DNA topoisomerase IV
-
Corbett, K.D., Schoeffler, A.J., Thomsen, N.D. and Berger, J.B. (2005) The structural basis for substrate specificity in DNA topoisomerase IV. J. Mol. Biol., 351, 545-561.
-
(2005)
J. Mol. Biol.
, vol.351
, pp. 545-561
-
-
Corbett, K.D.1
Schoeffler, A.J.2
Thomsen, N.D.3
Berger, J.B.4
-
51
-
-
0029955899
-
Conversion of DNA gyrase into a conventional type II topoisomerase
-
Kampranis, S.C. and Maxwell, A. (1996) Conversion of DNA gyrase into a conventional type II topoisomerase. Proc. Natl Acad. Sci. USA, 93, 14416-14421.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 14416-14421
-
-
Kampranis, S.C.1
Maxwell, A.2
-
52
-
-
22544447404
-
A Superhelical Spiral in the Escherichia coli DNA Gyrase A C-terminal Domain Imparts Unidirectional Supercoiling Bias
-
Ruthenburg, A.J., Graybosch, D.M., Huetsch, J.C. and Verdine, G.L. (2005) A Superhelical Spiral in the Escherichia coli DNA Gyrase A C-terminal Domain Imparts Unidirectional Supercoiling Bias. Proc. Natl Acad. Sci. USA, 280, 26177-26184.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.280
, pp. 26177-26184
-
-
Ruthenburg, A.J.1
Graybosch, D.M.2
Huetsch, J.C.3
Verdine, G.L.4
-
53
-
-
79956291011
-
Differences between positively and negatively supercoiled DNA that topoisomerases may distinguish
-
Fogg, J.M., Catanese, D.J., Randall, G.L., Swick, M.C. and Zechiedrich, L.E. (2009) Differences between positively and negatively supercoiled DNA that topoisomerases may distinguish. In Mathematics of DNA Structure, Function and Interactions. The IMA Volumes in Mathematics and its Applications, 2009, 150, 73-121.
-
(2009)
Mathematics of DNA Structure, Function and Interactions. The IMA Volumes in Mathematics and Its Applications
, vol.2009
, Issue.150
, pp. 73-121
-
-
Fogg, J.M.1
Catanese, D.J.2
Randall, G.L.3
Swick, M.C.4
Zechiedrich, L.E.5
-
54
-
-
0043194014
-
Single-molecule study of DNA unlinking by eukaryotic and prokaryotic type-II topoisomerases
-
Charvin, G., Bensimon, D. and Croquette, V. (2003) Single-molecule study of DNA unlinking by eukaryotic and prokaryotic type-II topoisomerases. Proc. Natl Acad. Sci. USA, 100, 9820-9825.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 9820-9825
-
-
Charvin, G.1
Bensimon, D.2
Croquette, V.3
-
55
-
-
0041306000
-
Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerases
-
Stone, M.D., Bryant, Z., Crisona, N.J., Smith, S.B., Vologodskii, A., Bustamente, C. and Cozzarelli, N.R. (2003) Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerases. Proc. Natl Acad. Sci. USA, 100, 8654-8659.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 8654-8659
-
-
Stone, M.D.1
Bryant, Z.2
Crisona, N.J.3
Smith, S.B.4
Vologodskii, A.5
Bustamente, C.6
Cozzarelli, N.R.7
-
56
-
-
20544452797
-
Tracking topoisomerase activity at the single-molecule level
-
Charvin, G., Strick, T.R., Bensimon, D. and Croquette, V. (2005) Tracking topoisomerase activity at the single-molecule level. Annu. Rev. Biophys. Biomol. Struct., 34, 201-219.
-
(2005)
Annu. Rev. Biophys. Biomol. Struct.
, vol.34
, pp. 201-219
-
-
Charvin, G.1
Strick, T.R.2
Bensimon, D.3
Croquette, V.4
-
57
-
-
33745812359
-
Alteration of Escherichia coli topoisomerase IV conformation upon enzyme binding to positively supercoiled DNA
-
Crisona, N.J. and Cozzarelli, N.R. (2006) Alteration of Escherichia coli topoisomerase IV conformation upon enzyme binding to positively supercoiled DNA. J. Biol. Chem., 281, 18927-18932.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 18927-18932
-
-
Crisona, N.J.1
Cozzarelli, N.R.2
-
58
-
-
66349135629
-
Mechanisms of chiral discrimination by topoisomerase IV
-
Neuman, K.C., Charvin, G., Bensimon, D. and Croquette, V. (2009) Mechanisms of chiral discrimination by topoisomerase IV. Proc. Natl Acad. Sci. USA, 106, 6986-6991.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 6986-6991
-
-
Neuman, K.C.1
Charvin, G.2
Bensimon, D.3
Croquette, V.4
-
59
-
-
0026178922
-
Catalytic function of topoisomerase II
-
Osheroff, N., Zechiedrich, E.L. and Gale, K. (1990) Catalytic function of topoisomerase II. Bioessays, 13, 269-275.
-
(1990)
Bioessays
, vol.13
, pp. 269-275
-
-
Osheroff, N.1
Zechiedrich, E.L.2
Gale, K.3
-
60
-
-
0027221961
-
On the simultaneous binding of eukaryotic DNA topoisomerase II to a pair of double-stranded DNA helices
-
Roca, J., Berger, J.M. and Wang, J.C. (1993) On the simultaneous binding of eukaryotic DNA topoisomerase II to a pair of double-stranded DNA helices. J. Biol. Chem., 268, 14250-14255.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 14250-14255
-
-
Roca, J.1
Berger, J.M.2
Wang, J.C.3
-
61
-
-
0025945390
-
Groove-Backbone Interaction in B-DNA. Implication for DNA condensation and recombination
-
Timsit, Y. and Moras, D. (1991) Groove-Backbone Interaction in B-DNA. Implication for DNA condensation and recombination. J. Mol. Biol., 221, 919-940.
-
(1991)
J. Mol. Biol.
, vol.221
, pp. 919-940
-
-
Timsit, Y.1
Moras, D.2
-
62
-
-
0028232140
-
DNA self-fitting: The double helix directs the geometry of its supramolecular assembly
-
Timsit, Y. and Moras, D. (1994) DNA self-fitting: the double helix directs the geometry of its supramolecular assembly. EMBO J., 13, 2737-2746.
-
(1994)
EMBO J.
, vol.13
, pp. 2737-2746
-
-
Timsit, Y.1
Moras, D.2
-
63
-
-
0030425434
-
Cruciform structures and functions
-
Timsit, Y. and Moras, D. (1996) Cruciform structures and functions. Q. Rev. Biophys., 29, 279-307.
-
(1996)
Q. Rev. Biophys.
, vol.29
, pp. 279-307
-
-
Timsit, Y.1
Moras, D.2
-
64
-
-
0025647116
-
Eukaryotic topoisomerases recognize nucleic acid topology by preferentially interacting with DNA crossovers
-
Zechiedrich, E.L. and Osheroff, N. (1990) Eukaryotic topoisomerases recognize nucleic acid topology by preferentially interacting with DNA crossovers. EMBO J., 9, 4555-4562.
-
(1990)
EMBO J.
, vol.9
, pp. 4555-4562
-
-
Zechiedrich, E.L.1
Osheroff, N.2
-
65
-
-
0026020910
-
Drosophila topoisomerase II-DNA interactions are affected by DNA structure
-
Howard, M.T., Lee, M.P., Hsieh, T.-S. and Griffith, J.D. (1991) Drosophila topoisomerase II-DNA interactions are affected by DNA structure. J. Mol. Biol., 217, 53-62.
-
(1991)
J. Mol. Biol.
, vol.217
, pp. 53-62
-
-
Howard, M.T.1
Lee, M.P.2
Hsieh, T.-S.3
Griffith, J.D.4
-
66
-
-
0026503668
-
A role for the passage helix in the cleavage reaction of eukaryotic topoisomerase II. A two-site model for enzyme mediated DNA cleavage
-
Corbett, A.H., Zechiedrich, E.L. and Osheroff, N. (1992) A role for the passage helix in the cleavage reaction of eukaryotic topoisomerase II. A two-site model for enzyme mediated DNA cleavage. J. Biol. Chem., 267, 683-686.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 683-686
-
-
Corbett, A.H.1
Zechiedrich, E.L.2
Osheroff, N.3
-
67
-
-
0033557141
-
Human DNA topoisomerase IIb binds and cleaves four-way junction DNA in vitro
-
West, K. and Austin, C.A. (1999) Human DNA topoisomerase IIb binds and cleaves four-way junction DNA in vitro. Nucleic Acids Res., 27, 984-992.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 984-992
-
-
West, K.1
Austin, C.A.2
-
68
-
-
0028242701
-
Site-specific cleavage of a DNA hairpin by topoisomerase II. DNA secondary structure as a determinant of enzyme recognition/cleavage
-
Froelich-Ammon, S.J., Gale, K. and Osheroff, N. (1994) Site-specific cleavage of a DNA hairpin by topoisomerase II. DNA secondary structure as a determinant of enzyme recognition/cleavage. J. Biol. Chem., 269, 7719-7725.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 7719-7725
-
-
Froelich-Ammon, S.J.1
Gale, K.2
Osheroff, N.3
-
69
-
-
56049098748
-
Hairpin structures formed by alpha satellite DNA of human centromeres are cleaved by human topoisomerase IIa
-
Jonstrup, A.T., Thomsen, T., Wang, Y., Knudsen, B., Koch, J. and Andersen, A.H. (2008) Hairpin structures formed by alpha satellite DNA of human centromeres are cleaved by human topoisomerase IIa. Nucleic Acids Res., 36, 6165-6174.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6165-6174
-
-
Jonstrup, A.T.1
Thomsen, T.2
Wang, Y.3
Knudsen, B.4
Koch, J.5
Andersen, A.H.6
-
70
-
-
34247346622
-
Does topoisomerase II recognize and cleave hairpins, cruciforms and crossovers of DNA?
-
Rene, B., Fermandjian, S. and Mauffret, O. Does topoisomerase II recognize and cleave hairpins, cruciforms and crossovers of DNA?. (2007). Biochimie, 89, 508-515.
-
(2007)
Biochimie
, vol.89
, pp. 508-515
-
-
Rene, B.1
Fermandjian, S.2
Mauffret, O.3
-
71
-
-
0032545153
-
Symmetry and chirality in topoisomerase II-DNA crossover recognition
-
Timsit, Y., Duplantier, B., Jannink, G. and Sikorav, J.L. (1998) Symmetry and chirality in topoisomerase II-DNA crossover recognition. J. Mol. Biol., 284, 1289-1299.
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 1289-1299
-
-
Timsit, Y.1
Duplantier, B.2
Jannink, G.3
Sikorav, J.L.4
-
72
-
-
63349108302
-
Topoisomerase II: A fitted mechanism for the chromatin landscape
-
Roca, J. (2009) Topoisomerase II: a fitted mechanism for the chromatin landscape. Nucleic Acids Res., 37, 721-730.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 721-730
-
-
Roca, J.1
-
73
-
-
0036076678
-
The inherent properties of DNA four-way junctions: Comparing the crystal structures of Holliday junctions
-
Eichman, B.F., Ortiz-Lombardia, M., Aymami, J., Coll, M. and Ho, P.S. (2002) The inherent properties of DNA four-way junctions: comparing the crystal structures of Holliday junctions. J. Mol. Biol., 320, 1037-1051.
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 1037-1051
-
-
Eichman, B.F.1
Ortiz-Lombardia, M.2
Aymami, J.3
Coll, M.4
Ho, P.S.5
-
74
-
-
0034754891
-
Convergent evolution of MutS and Topoisomerase II for clamping DNA crossovers and stacked Holliday junctions
-
Timsit, Y. (2001) Convergent evolution of MutS and Topoisomerase II for clamping DNA crossovers and stacked Holliday junctions. J. Biomol. Struct. Dyn., 19, 215-218.
-
(2001)
J. Biomol. Struct. Dyn.
, vol.19
, pp. 215-218
-
-
Timsit, Y.1
-
75
-
-
0034637111
-
The complete atomic structure of the large ribosomal subunit at 2.4 A resolution
-
Ban, N., Nissen, P., Hansen, J., Moore, P.B. and Steitz, A. (2000) The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. Science, 289, 905-920.
-
(2000)
Science
, vol.289
, pp. 905-920
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Moore, P.B.4
Steitz, A.5
-
76
-
-
0034699518
-
Structure of the 30S ribosomal subunit
-
Wimberly, B.T., Brodersen, D.E., Clemons, W., Morgan- Warren, R.J., Carter, A.P., Vonrhein, C., Hartschk, T. and Ramakrishnan, V. (2000) Structure of the 30S ribosomal subunit. Nature, 407, 327-339.
-
(2000)
Nature
, vol.407
, pp. 327-339
-
-
Wimberly, B.T.1
Brodersen, D.E.2
Clemons, W.3
Morgan- Warren, R.J.4
Carter, A.P.5
Vonrhein, C.6
Hartschk, T.7
Ramakrishnan, V.8
-
77
-
-
0035977093
-
High resolution structure of the large ribosomal subunit from a mesophilic eubacterium
-
Harms, J., Schluenzen, F., Zarivach, R., Basham, A., Gat, S., Agmon, I., Bartels, H., Franceschi, F. and Yonath, A. (2001) High resolution structure of the large ribosomal subunit from a mesophilic eubacterium. Cell, 107, 679-688.
-
(2001)
Cell
, vol.107
, pp. 679-688
-
-
Harms, J.1
Schluenzen, F.2
Zarivach, R.3
Basham, A.4
Gat, S.5
Agmon, I.6
Bartels, H.7
Franceschi, F.8
Yonath, A.9
-
78
-
-
0035942248
-
RNA tertiary interactions in the large ribosomal subunit: The A-minor motif
-
Nissen, P., Ippolito, J.A., Ban, N., Moore, P. and Steitz, T. (2001) RNA tertiary interactions in the large ribosomal subunit: the A-minor motif. Proc. Natl Acad. Sci. USA, 98, 4899-4903.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 4899-4903
-
-
Nissen, P.1
Ippolito, J.A.2
Ban, N.3
Moore, P.4
Steitz, T.5
-
79
-
-
77955080316
-
Differential stability of chiral DNA crossovers mediated by divalent cations
-
Varnai, P. and Timsit, Y. (2010) Differential stability of chiral DNA crossovers mediated by divalent cations. Nucleic Acid Res., 38, 4163-4172.
-
(2010)
Nucleic Acid Res.
, vol.38
, pp. 4163-4172
-
-
Varnai, P.1
Timsit, Y.2
-
80
-
-
0035010211
-
Geometric nomenclature and classification of RNA base pairs
-
Leontis, N.B. and Westhof, E. (2001) Geometric nomenclature and classification of RNA base pairs. RNA, 7, 499-512.
-
(2001)
RNA
, vol.7
, pp. 499-512
-
-
Leontis, N.B.1
Westhof, E.2
-
81
-
-
33744807172
-
The buidling blocks and motifs of RNA architecture
-
Leontis, N.B., Lescoute, A. and Westhof, E. (2006) The buidling blocks and motifs of RNA architecture. Curr. Opin. Struct. Biol., 16, 279-287.
-
(2006)
Curr. Opin. Struct. Biol.
, vol.16
, pp. 279-287
-
-
Leontis, N.B.1
Lescoute, A.2
Westhof, E.3
-
82
-
-
0033549817
-
Tertiary motifs in RNA structure and folding
-
Batey, R.T., Rambo, R.P. and Doudna, J.A. (1999) Tertiary motifs in RNA structure and folding. Angew. Chem. Int. Ed., 38, 2326-2343.
-
(1999)
Angew. Chem. Int. Ed.
, vol.38
, pp. 2326-2343
-
-
Batey, R.T.1
Rambo, R.P.2
Doudna, J.A.3
-
83
-
-
0026685165
-
DNA associations: Packing calculation in A-,B- and Z-DNA structures
-
Srinivasan, A.R. and Olson, W.K. (1992) DNA associations: packing calculation in A-, B- and Z-DNA structures. Biophys. Chem., 43, 279-310.
-
(1992)
Biophys. Chem.
, vol.43
, pp. 279-310
-
-
Srinivasan, A.R.1
Olson, W.K.2
-
84
-
-
0026657082
-
Crystallization of DNA
-
Timsit, Y. and Moras, D. (1992) Crystallization of DNA. Meth. Enzym., 211, 409429.
-
(1992)
Meth. Enzym.
, vol.211
, pp. 409429
-
-
Timsit, Y.1
Moras, D.2
-
85
-
-
0034727663
-
Is counterion delocalization responsible for collapse in RNA folding
-
Murthy, V.L. and Rose, G.D. (2000) Is counterion delocalization responsible for collapse in RNA folding. Biochemistry, 39, 14365-14370.
-
(2000)
Biochemistry
, vol.39
, pp. 14365-14370
-
-
Murthy, V.L.1
Rose, G.D.2
-
86
-
-
79952175748
-
Cytosine, the double helix and DNA self-assembly
-
Timsit, Y. and Varnai, P. (2011) Cytosine, the double helix and DNA self-assembly. J. Mol. Recognit., 24, 137-138.
-
(2011)
J. Mol. Recognit.
, vol.24
, pp. 137-138
-
-
Timsit, Y.1
Varnai, P.2
-
87
-
-
0031588009
-
Sequence-dependent crossed helix packing in the crystal structure of a B-DNA decamer yields a detailed model for the Holliday junction
-
Wood, A.A., Nunn, C.M., Trent, J.O. and Neidle, S. (1997) Sequence-dependent crossed helix packing in the crystal structure of a B-DNA decamer yields a detailed model for the Holliday junction. J. Mol. Biol., 269, 827-841.
-
(1997)
J. Mol. Biol.
, vol.269
, pp. 827-841
-
-
Wood, A.A.1
Nunn, C.M.2
Trent, J.O.3
Neidle, S.4
-
88
-
-
79956013643
-
Atomistic simulations reveal bubbles, kinks and wrinkles in supercoiled DNA
-
Mitchell, J.S., Laughton, C.A. and Harris, S.A. (2011) Atomistic simulations reveal bubbles, kinks and wrinkles in supercoiled DNA. Nucleic Acids Res., 39, 3928-3938.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 3928-3938
-
-
Mitchell, J.S.1
Laughton, C.A.2
Harris, S.A.3
-
89
-
-
0032930190
-
Left-handed DNA crossovers. Implications for DNA-DNA recognition and structural alterations
-
Timsit, Y., Shatzky-Schwartz, M. and Shakked, Z. (1999) Left-handed DNA crossovers. Implications for DNA-DNA recognition and structural alterations. J. Biomol. Struct. Dyn., 16, 775-785.
-
(1999)
J. Biomol. Struct. Dyn.
, vol.16
, pp. 775-785
-
-
Timsit, Y.1
Shatzky-Schwartz, M.2
Shakked, Z.3
-
90
-
-
0034698001
-
A-form conformational motifs in ligand-bound DNA structures
-
Lu, X.-J., Shakked, Z. and Olson, W. (2000) A-form conformational motifs in ligand-bound DNA structures. J. Mol. Biol., 300, 819-840.
-
(2000)
J. Mol. Biol.
, vol.300
, pp. 819-840
-
-
Lu, X.-J.1
Shakked, Z.2
Olson, W.3
-
91
-
-
0029044469
-
Crystal structure of an RNA dodecamer containing the Escherichia coli Shine-Dalgarno sequence
-
Schindelin, H., Zhang, M., Bald, R., Furste, J.-P., Erdmann, V.A. and Heinemann, U. (1995) Crystal structure of an RNA dodecamer containing the Escherichia coli Shine-Dalgarno sequence. J. Mol. Biol., 249, 595-603.
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 595-603
-
-
Schindelin, H.1
Zhang, M.2
Bald, R.3
Furste, J.-P.4
Erdmann, V.A.5
Heinemann, U.6
-
92
-
-
0028902990
-
Structure of an RNA double helix including uracil-uracil base pairs in an internal loop
-
Baeyens, K., De Bondt, H.L. and Holbrook, S.R. (1996) Structure of an RNA double helix including uracil-uracil base pairs in an internal loop. Nat. Struct. Biol., 2, 56-62.
-
(1996)
Nat. Struct. Biol.
, vol.2
, pp. 56-62
-
-
Baeyens, K.1
De Bondt, H.L.2
Holbrook, S.R.3
-
93
-
-
0036071391
-
GU receptors of double helices mediate tRNA movement in the ribosome
-
Gagnon, M. and Steinberg, S. (2002) GU receptors of double helices mediate tRNA movement in the ribosome. RNA, 8, 873-877.
-
(2002)
RNA
, vol.8
, pp. 873-877
-
-
Gagnon, M.1
Steinberg, S.2
-
94
-
-
33846026769
-
Close packing of helices 3 and 12 of 16S rRNA is required for the normal ribosome function
-
Gagnon, M.G., Mukhopadhyay, A. and Steinberg, S.V. (2006) Close packing of helices 3 and 12 of 16S rRNA is required for the normal ribosome function. J. Biol. Chem., 281, 39349-39357.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 39349-39357
-
-
Gagnon, M.G.1
Mukhopadhyay, A.2
Steinberg, S.V.3
-
95
-
-
0033527667
-
DNA structure and polymerase fidelity
-
Timsit, Y. (1999) DNA structure and polymerase fidelity. J. Mol. Biol., 293, 835-853.
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 835-853
-
-
Timsit, Y.1
-
96
-
-
3042681300
-
Information content and complexity in the higher organisation of DNA
-
Minsky, A. (2004) Information content and complexity in the higher organisation of DNA. Annu. Rev. Biophys. Biomol. Struct., 33, 317-342.
-
(2004)
Annu. Rev. Biophys. Biomol. Struct.
, vol.33
, pp. 317-342
-
-
Minsky, A.1
-
99
-
-
0034628902
-
A cruciform structural transition provides a molecular switch for chromosome structure and dynamics
-
Shlyakhtenko, L.S., Hsieh, P., Grigoriev, M., Potaman, V.N., Sinden, R. and Lyubchenko, Y.L. (2000) A cruciform structural transition provides a molecular switch for chromosome structure and dynamics. J. Mol. Biol., 296, 1169-1173.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 1169-1173
-
-
Shlyakhtenko, L.S.1
Hsieh, P.2
Grigoriev, M.3
Potaman, V.N.4
Sinden, R.5
Lyubchenko, Y.L.6
-
100
-
-
0037131219
-
Sticky DNA: Effect of the polypurine polypyrimidine sequence
-
Vetcher, A.A., Napierala, M. and Wells, R.D. (2002) Sticky DNA: effect of the polypurine. polypyrimidine sequence. J. Biol. Chem., 277, 39228-39234.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 39228-39234
-
-
Vetcher, A.A.1
Napierala, M.2
Wells, R.D.3
-
101
-
-
77949511946
-
Helical chirality: A link between local interactions and global topology in DNA
-
Timsit, Y. and Varnai, P. (2010) Helical chirality: a link between local interactions and global topology in DNA. PLos ONE, 5, e9326.
-
(2010)
PLos ONE
, vol.5
-
-
Timsit, Y.1
Varnai, P.2
-
102
-
-
0030817948
-
Winding of the DNA helix by divalent metal ions
-
Xu, Y.-C. and Bremer, H. (1997) Winding of the DNA helix by divalent metal ions. Nucleic Acids Res., 25, 4067-4071.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4067-4071
-
-
Xu, Y.-C.1
Bremer, H.2
-
103
-
-
0035910283
-
Varying levels of positive and negative supercoiling differently affect the efficiency with which topoisomerase II catenates and decatenates DNA
-
Roca, J. (2001) Varying levels of positive and negative supercoiling differently affect the efficiency with which topoisomerase II catenates and decatenates DNA. J. Mol. Biol., 305, 441-450.
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 441-450
-
-
Roca, J.1
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