-
2
-
-
0039051533
-
Knotting problems in biology
-
American Mathematical Society, Providence, Rhode Island, USA
-
Delbrück M. Knotting problems in biology. Mathematical Problems in the Biological Sciences (Proceedings of Symposia in Applied Mathematics Vol. 14 (1962), American Mathematical Society, Providence, Rhode Island, USA 55-63
-
(1962)
Mathematical Problems in the Biological Sciences (Proceedings of Symposia in Applied Mathematics
, vol.14
, pp. 55-63
-
-
Delbrück, M.1
-
3
-
-
0023644793
-
Increased production of a knotted form of plasmid pBR322 DNA in Escherichia coli DNA topoisomerase mutants
-
Shishido K., Komiyama N., and Ikawa S. Increased production of a knotted form of plasmid pBR322 DNA in Escherichia coli DNA topoisomerase mutants. J. Mol. Biol. 195 (1987) 215-218
-
(1987)
J. Mol. Biol.
, vol.195
, pp. 215-218
-
-
Shishido, K.1
Komiyama, N.2
Ikawa, S.3
-
4
-
-
0342821330
-
Topological complexity of different populations of pBR322 as visualized by two-dimensional agarose gel electrophoresis
-
Martin-Parras L., Lucas I., Martinez-Robles M.L., Hernandez P., Krimer D.B., Hyrien O., and Schvartzman J.B. Topological complexity of different populations of pBR322 as visualized by two-dimensional agarose gel electrophoresis. Nucleic Acids Res. 26 (1998) 3424-3432
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 3424-3432
-
-
Martin-Parras, L.1
Lucas, I.2
Martinez-Robles, M.L.3
Hernandez, P.4
Krimer, D.B.5
Hyrien, O.6
Schvartzman, J.B.7
-
5
-
-
0033539595
-
Equilibrium distributions of topological states in circular DNA: interplay of supercoiling and knotting
-
Podtelezhnikov A.A., Cozzarelli N.R., and Vologodskii A.V. Equilibrium distributions of topological states in circular DNA: interplay of supercoiling and knotting. Proc. Natl Acad. Sci. USA 96 (1999) 12974-12979
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 12974-12979
-
-
Podtelezhnikov, A.A.1
Cozzarelli, N.R.2
Vologodskii, A.V.3
-
6
-
-
0030014783
-
DNA topoisomerases
-
Wang J.C. DNA topoisomerases. Annu. Rev. Biochem. 65 (1996) 635-692
-
(1996)
Annu. Rev. Biochem.
, vol.65
, pp. 635-692
-
-
Wang, J.C.1
-
7
-
-
0034923502
-
DNA topoisomerases: structure, function, and mechanism
-
Champoux J.J. DNA topoisomerases: structure, function, and mechanism. Annu. Rev. Biochem. 70 (2001) 369-413
-
(2001)
Annu. Rev. Biochem.
, vol.70
, pp. 369-413
-
-
Champoux, J.J.1
-
8
-
-
0000536643
-
DNA topoisomerase-targeting antitumor drugs can be studied in yeast
-
Nitiss J., and Wang J.C. DNA topoisomerase-targeting antitumor drugs can be studied in yeast. Proc. Natl Acad. Sci. USA 85 (1988) 7501-7505
-
(1988)
Proc. Natl Acad. Sci. USA
, vol.85
, pp. 7501-7505
-
-
Nitiss, J.1
Wang, J.C.2
-
10
-
-
0035029153
-
Tumor cell death induced by topoisomerase-targeting drugs
-
Li T.K., and Liu L.F. Tumor cell death induced by topoisomerase-targeting drugs. Annu. Rev. Pharmacol. Toxicol. 41 (2001) 53-77
-
(2001)
Annu. Rev. Pharmacol. Toxicol.
, vol.41
, pp. 53-77
-
-
Li, T.K.1
Liu, L.F.2
-
11
-
-
9644295787
-
A mutation in Escherichia coli DNA gyrase conferring quinolone resistance results in sensitivity to drugs targeting eukaryotic topoisomerase II
-
Gruger T., Nitiss J.L., Maxwell A., Zechiedrich E.L., Heisig P., Seeber S., et al. A mutation in Escherichia coli DNA gyrase conferring quinolone resistance results in sensitivity to drugs targeting eukaryotic topoisomerase II. Antimicrob. Agents Chemother. 48 (2004) 4495-4504
-
(2004)
Antimicrob. Agents Chemother.
, vol.48
, pp. 4495-4504
-
-
Gruger, T.1
Nitiss, J.L.2
Maxwell, A.3
Zechiedrich, E.L.4
Heisig, P.5
Seeber, S.6
-
12
-
-
0015222656
-
Interaction between DNA and an Escherichia coli protein ω
-
Wang J.C. Interaction between DNA and an Escherichia coli protein ω. J. Mol. Biol. 55 (1971) 523-533
-
(1971)
J. Mol. Biol.
, vol.55
, pp. 523-533
-
-
Wang, J.C.1
-
13
-
-
0028205306
-
Kinetics of chromosome condensation in the presence of topoisomerases - a phantom chain model
-
Sikorav J.L., and Jannink G. Kinetics of chromosome condensation in the presence of topoisomerases - a phantom chain model. Biophys. J. 66 (1994) 827-837
-
(1994)
Biophys. J.
, vol.66
, pp. 827-837
-
-
Sikorav, J.L.1
Jannink, G.2
-
14
-
-
0000543794
-
Action of nicking-closing enzyme on supercoiled and nonsupercoiled closed circular DNA: formation of a Boltzmann distribution of topological isomers
-
Pulleyblank D.E., Shure M., Tang D., Vinograd J., and Vosberg H.P. Action of nicking-closing enzyme on supercoiled and nonsupercoiled closed circular DNA: formation of a Boltzmann distribution of topological isomers. Proc. Natl Acad. Sci. USA 72 (1975) 4280-4284
-
(1975)
Proc. Natl Acad. Sci. USA
, vol.72
, pp. 4280-4284
-
-
Pulleyblank, D.E.1
Shure, M.2
Tang, D.3
Vinograd, J.4
Vosberg, H.P.5
-
15
-
-
0027200062
-
Knotting of a DNA chain during ring-closure
-
Shaw S.Y., and Wang J.C. Knotting of a DNA chain during ring-closure. Science 260 (1993) 533-536
-
(1993)
Science
, vol.260
, pp. 533-536
-
-
Shaw, S.Y.1
Wang, J.C.2
-
16
-
-
0031588905
-
The effect of ionic conditions on the conformations of supercoiled DNA. 2. Equilibrium catenation
-
Rybenkov V.V., Vologodskii A.V., and Cozzarelli N.R. The effect of ionic conditions on the conformations of supercoiled DNA. 2. Equilibrium catenation. J. Mol. Biol. 267 (1997) 312-323
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 312-323
-
-
Rybenkov, V.V.1
Vologodskii, A.V.2
Cozzarelli, N.R.3
-
17
-
-
0030758268
-
Simplification of DNA topology below equilibrium values by type II topoisomerases
-
Rybenkov V.V., Ullsperger C., Vologodskii A.V., and Cozzarelli N.R. Simplification of DNA topology below equilibrium values by type II topoisomerases. Science 227 (1997) 690-693
-
(1997)
Science
, vol.227
, pp. 690-693
-
-
Rybenkov, V.V.1
Ullsperger, C.2
Vologodskii, A.V.3
Cozzarelli, N.R.4
-
19
-
-
0035853134
-
Mechanism of topology simplification by type II DNA topoisomerases
-
Vologodskii A.V., Zhang W., Rybenkov V.V., Podtelezhnikov A.A., Subramanian D., Griffith J.D., and Cozzarelli N.R. Mechanism of topology simplification by type II DNA topoisomerases. Proc. Natl Acad. Sci. USA 98 (2001) 3045-3049
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 3045-3049
-
-
Vologodskii, A.V.1
Zhang, W.2
Rybenkov, V.V.3
Podtelezhnikov, A.A.4
Subramanian, D.5
Griffith, J.D.6
Cozzarelli, N.R.7
-
20
-
-
0023904316
-
Action at a distance along a DNA
-
Wang J.C., and Giaever G.N. Action at a distance along a DNA. Science 240 (1988) 300-304
-
(1988)
Science
, vol.240
, pp. 300-304
-
-
Wang, J.C.1
Giaever, G.N.2
-
21
-
-
0033613387
-
A kinetic proofreading mechanism for disentanglement of DNA by topoisomerases
-
Yan J., Magnasco M.O., and Marko J.F. A kinetic proofreading mechanism for disentanglement of DNA by topoisomerases. Nature 401 (1999) 932-935
-
(1999)
Nature
, vol.401
, pp. 932-935
-
-
Yan, J.1
Magnasco, M.O.2
Marko, J.F.3
-
22
-
-
0035278084
-
Kinetic proofreading can explain the suppression of supercoiling of circular DNA molecules by type-II topoisomerases
-
Yan J., Magnasco M.O., and Marko J.F. Kinetic proofreading can explain the suppression of supercoiling of circular DNA molecules by type-II topoisomerases. Phys. Rev. E 63 (2001) 031909
-
(2001)
Phys. Rev. E
, vol.63
, pp. 031909
-
-
Yan, J.1
Magnasco, M.O.2
Marko, J.F.3
-
23
-
-
1542501878
-
Asymmetric removal of supercoils suggests how topoisomerase II simplifies DNA topology
-
Trigueros S., Salceda J., Bermudez I., Fernández X., and Roca J. Asymmetric removal of supercoils suggests how topoisomerase II simplifies DNA topology. J. Mol. Biol. 335 (2004) 723-731
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 723-731
-
-
Trigueros, S.1
Salceda, J.2
Bermudez, I.3
Fernández, X.4
Roca, J.5
-
24
-
-
28844493513
-
Coupling ATP hydrolysis to DNA strand passage in type IIA DNA topoisomerases
-
Maxwell A., Costenaro L., Mitelheiser S., and Bates A.D. Coupling ATP hydrolysis to DNA strand passage in type IIA DNA topoisomerases. Biochem. Soc. Trans. 33 (2005) 1460-1464
-
(2005)
Biochem. Soc. Trans.
, vol.33
, pp. 1460-1464
-
-
Maxwell, A.1
Costenaro, L.2
Mitelheiser, S.3
Bates, A.D.4
-
25
-
-
3242754359
-
DNA disentangling by type-2 topoisomerases
-
Buck G.R., and Zechiedrich E.L. DNA disentangling by type-2 topoisomerases. J. Mol. Biol. 340 (2004) 933-939
-
(2004)
J. Mol. Biol.
, vol.340
, pp. 933-939
-
-
Buck, G.R.1
Zechiedrich, E.L.2
-
26
-
-
0025647116
-
Eukaryotic topoisomerases recognize nucleic acid topology by preferentially interacting with DNA crossovers
-
Zechiedrich E.L., and Osheroff N. Eukaryotic topoisomerases recognize nucleic acid topology by preferentially interacting with DNA crossovers. EMBO J. 9 (1990) 4555-4562
-
(1990)
EMBO J.
, vol.9
, pp. 4555-4562
-
-
Zechiedrich, E.L.1
Osheroff, N.2
-
27
-
-
22544467771
-
The structural basis for substrate specificity in DNA topoisomerase IV
-
Corbett K.D., Schoeffler A.J., Thomsen N.D., and Berger J.M. The structural basis for substrate specificity in DNA topoisomerase IV. J. Mol. Biol. 351 (2005) 545-561
-
(2005)
J. Mol. Biol.
, vol.351
, pp. 545-561
-
-
Corbett, K.D.1
Schoeffler, A.J.2
Thomsen, N.D.3
Berger, J.M.4
-
28
-
-
28844455588
-
Recent advances in understanding structure-function relationships in the type II topoisomerase mechanism
-
Schoeffler A.J., and Berger J.M. Recent advances in understanding structure-function relationships in the type II topoisomerase mechanism. Biochem. Soc. Trans. 33 (2005) 1465-1470
-
(2005)
Biochem. Soc. Trans.
, vol.33
, pp. 1465-1470
-
-
Schoeffler, A.J.1
Berger, J.M.2
-
29
-
-
30944441520
-
Topoisomerase II-DNA complexes trapped by ICRF-193 perturb chromatin structure
-
Germe T., and Hyrien O. Topoisomerase II-DNA complexes trapped by ICRF-193 perturb chromatin structure. EMBO Rep. 6 (2005) 729-735
-
(2005)
EMBO Rep.
, vol.6
, pp. 729-735
-
-
Germe, T.1
Hyrien, O.2
-
30
-
-
33646186254
-
Inferring global topology from local juxtaposition geometry: interlinking polymer rings and ramifications for topoisomerase action
-
Liu Z., Zechiedrich E.L., and Chan H.S. Inferring global topology from local juxtaposition geometry: interlinking polymer rings and ramifications for topoisomerase action. Biophys. J. 90 (2006) 2344-2355
-
(2006)
Biophys. J.
, vol.90
, pp. 2344-2355
-
-
Liu, Z.1
Zechiedrich, E.L.2
Chan, H.S.3
-
31
-
-
0028858007
-
Roles of topoisomerase IV and DNA gyrase in DNA unlinking during replication in Escherichia coli
-
Zechiedrich E.L., and Cozzarelli N.R. Roles of topoisomerase IV and DNA gyrase in DNA unlinking during replication in Escherichia coli. Genes Dev. 9 (1995) 2859-2869
-
(1995)
Genes Dev.
, vol.9
, pp. 2859-2869
-
-
Zechiedrich, E.L.1
Cozzarelli, N.R.2
-
32
-
-
0030771373
-
Topoisomerase IV, not gyrase, decatenates products of site-specific recombination in Escherichia coli
-
Zechiedrich E.L., Khodursky A.B., and Cozzarelli N.R. Topoisomerase IV, not gyrase, decatenates products of site-specific recombination in Escherichia coli. Genes Dev. 11 (1997) 2580-2592
-
(1997)
Genes Dev.
, vol.11
, pp. 2580-2592
-
-
Zechiedrich, E.L.1
Khodursky, A.B.2
Cozzarelli, N.R.3
-
33
-
-
33645279594
-
Electrostatics of DNA-DNA juxtapositions: consequences for type II topoisomerase function
-
Randall G.L., Pettitt B.M., Buck G.R., and Zechiedrich E.L. Electrostatics of DNA-DNA juxtapositions: consequences for type II topoisomerase function. J. Phys., Condens. Matter 18 (2006) S173-S185
-
(2006)
J. Phys., Condens. Matter
, vol.18
-
-
Randall, G.L.1
Pettitt, B.M.2
Buck, G.R.3
Zechiedrich, E.L.4
-
34
-
-
0035868644
-
Topoisomerase IV, alone, unknots DNA in E. coli
-
Deibler R.W., Rahmati S., and Zechiedrich E.L. Topoisomerase IV, alone, unknots DNA in E. coli. Genes Dev. 15 (2001) 748-761
-
(2001)
Genes Dev.
, vol.15
, pp. 748-761
-
-
Deibler, R.W.1
Rahmati, S.2
Zechiedrich, E.L.3
-
35
-
-
0003101252
-
Statistical treatment of polymer solutions at infinite dilution
-
Orr W.J.C. Statistical treatment of polymer solutions at infinite dilution. Trans. Faraday Soc. 43 (1947) 12-27
-
(1947)
Trans. Faraday Soc.
, vol.43
, pp. 12-27
-
-
Orr, W.J.C.1
-
36
-
-
84949218718
-
Self avoiding walks on lattices
-
Domb C. Self avoiding walks on lattices. Adv. Chem. Phys. 15 (1969) 229-259
-
(1969)
Adv. Chem. Phys.
, vol.15
, pp. 229-259
-
-
Domb, C.1
-
37
-
-
0016696599
-
Studies on protein folding, unfolding and fluctuations by computer simulation. 1. The effect of specific amino acid sequence represented by specific inter-unit interactions
-
Taketomi H., Ueda Y., and Gō N. Studies on protein folding, unfolding and fluctuations by computer simulation. 1. The effect of specific amino acid sequence represented by specific inter-unit interactions. Int. J. Pept. Protein Res. 7 (1975) 445-459
-
(1975)
Int. J. Pept. Protein Res.
, vol.7
, pp. 445-459
-
-
Taketomi, H.1
Ueda, Y.2
Go, N.3
-
38
-
-
36549094651
-
Intrachain loops in polymers: effects of excluded volume
-
[Errata: 96, 3361 (1992); 107, 10353 (1997)]
-
Chan H.S., and Dill K.A. Intrachain loops in polymers: effects of excluded volume. J. Chem. Phys. 90 (1989) 492-509 [Errata: 96, 3361 (1992); 107, 10353 (1997)]
-
(1989)
J. Chem. Phys.
, vol.90
, pp. 492-509
-
-
Chan, H.S.1
Dill, K.A.2
-
39
-
-
0025150383
-
Origins of structure in globular proteins
-
Chan H.S., and Dill K.A. Origins of structure in globular proteins. Proc. Natl Acad. Sci. USA 87 (1990) 6388-6392
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 6388-6392
-
-
Chan, H.S.1
Dill, K.A.2
-
41
-
-
0026723063
-
Protein folding funnels: a kinetic approach to the sequence-structure relationship
-
Leopold P.E., Montal M., and Onuchic J.N. Protein folding funnels: a kinetic approach to the sequence-structure relationship. Proc. Natl Acad. Sci. USA 89 (1992) 8721-8725
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 8721-8725
-
-
Leopold, P.E.1
Montal, M.2
Onuchic, J.N.3
-
42
-
-
0027318781
-
Kinetics and thermodynamics of folding in model proteins
-
Camacho C.J., and Thirumalai D. Kinetics and thermodynamics of folding in model proteins. Proc. Natl Acad. Sci. USA 90 (1993) 6369-6372
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 6369-6372
-
-
Camacho, C.J.1
Thirumalai, D.2
-
43
-
-
0028149160
-
Exploring conformational space with a simple lattice model for protein structure
-
Hinds D.A., and Levitt M. Exploring conformational space with a simple lattice model for protein structure. J. Mol. Biol. 243 (1994) 668-682
-
(1994)
J. Mol. Biol.
, vol.243
, pp. 668-682
-
-
Hinds, D.A.1
Levitt, M.2
-
44
-
-
0028947257
-
Funnels, pathways and the energy landscape of protein folding: a synthesis
-
Bryngelson J.D., Onuchic J.N., Socci N.D., and Wolynes P.G. Funnels, pathways and the energy landscape of protein folding: a synthesis. Proteins: Struct. Funct. Genet. 21 (1995) 167-195
-
(1995)
Proteins: Struct. Funct. Genet.
, vol.21
, pp. 167-195
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Socci, N.D.3
Wolynes, P.G.4
-
45
-
-
0029025927
-
Lattice model for rapidly folding protein-like heteropolymers
-
Shrivastava I., Vishveshwara S., Cieplak M., Maritan A., and Banavar J.R. Lattice model for rapidly folding protein-like heteropolymers. Proc. Natl Acad. Sci. USA 92 (1995) 9206-9209
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 9206-9209
-
-
Shrivastava, I.1
Vishveshwara, S.2
Cieplak, M.3
Maritan, A.4
Banavar, J.R.5
-
46
-
-
0037297693
-
Deep trefoil knot implicated in RNA binding found in an archaebacterial protein
-
Zarembinski T.I., Kim Y., Peterson K., Christendat D., Dharamsi A., Arrowsmith C.H., et al. Deep trefoil knot implicated in RNA binding found in an archaebacterial protein. Proteins: Struct. Funct. Genet. 50 (2003) 177-183
-
(2003)
Proteins: Struct. Funct. Genet.
, vol.50
, pp. 177-183
-
-
Zarembinski, T.I.1
Kim, Y.2
Peterson, K.3
Christendat, D.4
Dharamsi, A.5
Arrowsmith, C.H.6
-
47
-
-
1242338901
-
Loops, linkages, rings, catenanes, cages, and crowders: entropy-based strategies for stabilizing proteins
-
Zhou H.-X. Loops, linkages, rings, catenanes, cages, and crowders: entropy-based strategies for stabilizing proteins. Acc. Chem. Res. 37 (2004) 123-130
-
(2004)
Acc. Chem. Res.
, vol.37
, pp. 123-130
-
-
Zhou, H.-X.1
-
48
-
-
13844255609
-
Folding studies on a knotted protein
-
Mallam A.L., and Jackson S.E. Folding studies on a knotted protein. J. Mol. Biol. 346 (2005) 1409-1421
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 1409-1421
-
-
Mallam, A.L.1
Jackson, S.E.2
-
49
-
-
27844461604
-
A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome
-
Wagner J.R., Brunzelle J.S., Forest K.T., and Vierstra R.D. A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome. Nature 438 (2005) 325-331
-
(2005)
Nature
, vol.438
, pp. 325-331
-
-
Wagner, J.R.1
Brunzelle, J.S.2
Forest, K.T.3
Vierstra, R.D.4
-
50
-
-
36149033407
-
Knots in self-avoiding walks
-
Sumners D.W., and Whittington S.G. Knots in self-avoiding walks. J. Phys. A 21 (1988) 1689-1694
-
(1988)
J. Phys. A
, vol.21
, pp. 1689-1694
-
-
Sumners, D.W.1
Whittington, S.G.2
-
52
-
-
21344497453
-
The writhe of a self-avoiding walk
-
Orlandini E., Tesi M.C., Whittington S.G., Sumners D.W., and van Rensburg E.J.J. The writhe of a self-avoiding walk. J. Phys. A 27 (1994) L333-L338
-
(1994)
J. Phys. A
, vol.27
-
-
Orlandini, E.1
Tesi, M.C.2
Whittington, S.G.3
Sumners, D.W.4
van Rensburg, E.J.J.5
-
53
-
-
0035929527
-
On the dominance of trivial knots among SAPs on a cubic lattice
-
Yao A., Matsuda H., Tsukahara H., Shimamura M.K., and Deguchi T. On the dominance of trivial knots among SAPs on a cubic lattice. J. Phys. A 34 (2001) 7563-7577
-
(2001)
J. Phys. A
, vol.34
, pp. 7563-7577
-
-
Yao, A.1
Matsuda, H.2
Tsukahara, H.3
Shimamura, M.K.4
Deguchi, T.5
-
55
-
-
84888851216
-
The probability of knotting after a local strand passage in SAPs
-
1004-62-177 (http://www.ams.org/amsmtgs/2114_abstracts/1004-62-177.pdf)
-
Szafron M.L., and Soteros C.E. The probability of knotting after a local strand passage in SAPs. Abstr. Pap. Presented Am. Math. Soc. 26 (2005). http://www.ams.org/amsmtgs/2114_abstracts/1004-62-177.pdf 1004-62-177 (http://www.ams.org/amsmtgs/2114_abstracts/1004-62-177.pdf)
-
(2005)
Abstr. Pap. Presented Am. Math. Soc.
, vol.26
-
-
Szafron, M.L.1
Soteros, C.E.2
-
56
-
-
84888843195
-
Random state transitions of knots: a first step towards modeling unknotting by type II topoisomerases
-
in press (http://math.berkeley.edu/~mariel/ Vazquez_topoII05.pdf)
-
Hua X., Nguyen D., Raghavan B., Arsuaga J., and Vazquez M. Random state transitions of knots: a first step towards modeling unknotting by type II topoisomerases. Topology and its Applications (2005). http://math.berkeley.edu/~mariel/Vazquez_topoII05.pdf in press (http://math.berkeley.edu/~mariel/ Vazquez_topoII05.pdf)
-
(2005)
Topology and its Applications
-
-
Hua, X.1
Nguyen, D.2
Raghavan, B.3
Arsuaga, J.4
Vazquez, M.5
-
58
-
-
84968473981
-
A new polynomial invariant of knots and links
-
Freyd P., Yetter D., Hoste J., Lickorish W.B.R., Millett K., and Ocneanu A. A new polynomial invariant of knots and links. Bull. Am. Math. Soc. 12 (1985) 239-246
-
(1985)
Bull. Am. Math. Soc.
, vol.12
, pp. 239-246
-
-
Freyd, P.1
Yetter, D.2
Hoste, J.3
Lickorish, W.B.R.4
Millett, K.5
Ocneanu, A.6
-
59
-
-
84888825389
-
-
Jenkins, R.J. (1989). Knot Theory, Simple Weaves, and an Algorithm for Computing the HOMFLY Polynomial. Master's thesis in Mathematics (Carnegie Mellon University, Pittsburgh, Pennsylvania, USA).
-
-
-
-
60
-
-
33744993213
-
-
Cambridge University Press, Cambridge, UK
-
Cromwell P. Knots and Links (2004), Cambridge University Press, Cambridge, UK 66-70
-
(2004)
Knots and Links
, pp. 66-70
-
-
Cromwell, P.1
-
61
-
-
0003740339
-
-
Publish or Perish Inc., Berkeley, California, USA
-
Rolfsen D. Knots and Links (1976), Publish or Perish Inc., Berkeley, California, USA
-
(1976)
Knots and Links
-
-
Rolfsen, D.1
-
62
-
-
36849112363
-
Statistics of a random coil chain in the presence of a point (two-dimensional case) or line (three-dimensional case) obstacle
-
Saito N., and Chen Y. Statistics of a random coil chain in the presence of a point (two-dimensional case) or line (three-dimensional case) obstacle. J. Chem. Phys. 59 (1973) 3701-3709
-
(1973)
J. Chem. Phys.
, vol.59
, pp. 3701-3709
-
-
Saito, N.1
Chen, Y.2
-
63
-
-
0000996728
-
Monte Carlo study of freely jointed ring polymers. II. The writhing number
-
Chen Y. Monte Carlo study of freely jointed ring polymers. II. The writhing number. J. Chem. Phys. 75 (1981) 2447-2453
-
(1981)
J. Chem. Phys.
, vol.75
, pp. 2447-2453
-
-
Chen, Y.1
-
64
-
-
0004598743
-
Self-entanglement in ring polymers
-
Koniaris K., and Muthukumar M. Self-entanglement in ring polymers. J. Chem. Phys. 95 (1991) 2873-2881
-
(1991)
J. Chem. Phys.
, vol.95
, pp. 2873-2881
-
-
Koniaris, K.1
Muthukumar, M.2
-
65
-
-
4243653687
-
Crossings and writhe of flexible and ideal knots
-
Huang J.Y., and Lai P.Y. Crossings and writhe of flexible and ideal knots. Phys. Rev. E 63 (2001) 021506
-
(2001)
Phys. Rev. E
, vol.63
, pp. 021506
-
-
Huang, J.Y.1
Lai, P.Y.2
-
66
-
-
41349095628
-
Dynamics of polymer knots at equilibrium
-
Lai P.Y. Dynamics of polymer knots at equilibrium. Phys. Rev. E 66 (2002) 021805
-
(2002)
Phys. Rev. E
, vol.66
, pp. 021805
-
-
Lai, P.Y.1
-
67
-
-
0038286173
-
Scaling behavior of random knots
-
Dobay A., Dubochet J., Millett K., Sottas P.E., and Stasiak A. Scaling behavior of random knots. Proc. Natl Acad. Sci. USA 100 (2003) 5611-5615
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 5611-5615
-
-
Dobay, A.1
Dubochet, J.2
Millett, K.3
Sottas, P.E.4
Stasiak, A.5
-
68
-
-
42749100050
-
Role of flexibility in entanglement
-
Buck G., and Rawdon E.J. Role of flexibility in entanglement. Phys. Rev. E 70 (2004) 011803
-
(2004)
Phys. Rev. E
, vol.70
, pp. 011803
-
-
Buck, G.1
Rawdon, E.J.2
-
69
-
-
13244285443
-
Simulations of action of DNA topoisomerases to investigate boundaries and shapes of spaces of knots
-
Flammini A., Maritan A., and Stasiak A. Simulations of action of DNA topoisomerases to investigate boundaries and shapes of spaces of knots. Biophys. J. 87 (2004) 2968-2975
-
(2004)
Biophys. J.
, vol.87
, pp. 2968-2975
-
-
Flammini, A.1
Maritan, A.2
Stasiak, A.3
-
70
-
-
17044411321
-
How knotting regulates the reversible intrachain reaction
-
Sheng Y.J., Wu C.N., Lai P.Y., and Tsao H.K. How knotting regulates the reversible intrachain reaction. Macromolecules 38 (2005) 2959-2965
-
(2005)
Macromolecules
, vol.38
, pp. 2959-2965
-
-
Sheng, Y.J.1
Wu, C.N.2
Lai, P.Y.3
Tsao, H.K.4
-
72
-
-
0000294335
-
Monte Carlo generation of self-avoiding walks with fixed endpoints and fixed length
-
Madras N., Orlitsky A., and Shepp L.A. Monte Carlo generation of self-avoiding walks with fixed endpoints and fixed length. J. Stat. Phys. 58 (1990) 159-183
-
(1990)
J. Stat. Phys.
, vol.58
, pp. 159-183
-
-
Madras, N.1
Orlitsky, A.2
Shepp, L.A.3
-
73
-
-
0000935544
-
Random paths and random surfaces on a digital computer
-
Berg B., and Foerster D. Random paths and random surfaces on a digital computer. Phys. Letters, Sect. B 106 (1981) 323-326
-
(1981)
Phys. Letters, Sect. B
, vol.106
, pp. 323-326
-
-
Berg, B.1
Foerster, D.2
-
75
-
-
0642361805
-
Topological invariants of knots and links
-
Alexander J.W. Topological invariants of knots and links. Trans. Am. Math. Soc. 30 (1928) 275-306
-
(1928)
Trans. Am. Math. Soc.
, vol.30
, pp. 275-306
-
-
Alexander, J.W.1
-
76
-
-
0012017901
-
Program for analyzing knots represented by polygonal paths
-
Harris B.A., and Harvey S.C. Program for analyzing knots represented by polygonal paths. J. Comput. Chem. 20 (1999) 813-818
-
(1999)
J. Comput. Chem.
, vol.20
, pp. 813-818
-
-
Harris, B.A.1
Harvey, S.C.2
-
78
-
-
0000761422
-
Minimal knotted polygons on the cubic lattice
-
Diao Y. Minimal knotted polygons on the cubic lattice. J. Knot Theory Ramif. 2 (1993) 413-425
-
(1993)
J. Knot Theory Ramif.
, vol.2
, pp. 413-425
-
-
Diao, Y.1
-
80
-
-
36449008575
-
Energy landscapes and the collapse dynamics of homopolymers
-
Chan H.S., and Dill K.A. Energy landscapes and the collapse dynamics of homopolymers. J. Chem. Phys. 99 (1993) 2116-2127
-
(1993)
J. Chem. Phys.
, vol.99
, pp. 2116-2127
-
-
Chan, H.S.1
Dill, K.A.2
|