-
1
-
-
0032529159
-
Smads and early developmental signaling by the TGFβ superfamily
-
Whitman, M. (1998) Smads and early developmental signaling by the TGFbeta superfamily. Genes Dev., 12, 2445-2462. (Pubitemid 28406948)
-
(1998)
Genes and Development
, vol.12
, Issue.16
, pp. 2445-2462
-
-
Whitman, M.1
-
2
-
-
0031685620
-
TGF-beta signal transduction
-
Massagué, J. (1998) TGF-beta signal transduction. Annu. Rev. Biochem., 67, 753-791.
-
(1998)
Annu. Rev. Biochem.
, vol.67
, pp. 753-791
-
-
Massagué, J.1
-
3
-
-
0029892494
-
MADR1, a MAD-related protein that functions in BMP2 signaling pathways
-
DOI 10.1016/S0092-8674(00)81250-7
-
Hoodless, P., Haerry, T., Abdollah, S., Stapleton, M., O'Connor, M., Attisano, L. and Wrana, J. (1996) MADR1, a MAD-related protein that functions in BMP2 signaling pathways. Cell, 85, 489-500. (Pubitemid 26157188)
-
(1996)
Cell
, vol.85
, Issue.4
, pp. 489-500
-
-
Hoodless, P.A.1
Haerry, T.2
Abdollah, S.3
Stapleton, M.4
O'Connor, M.B.5
Attisano, L.6
Wrana, J.L.7
-
4
-
-
0034685657
-
Mouse Smad8 phosphorylation downstream of BMP receptors ALK-2, ALK-3, and ALK-6 induces its association with Smad4 and transcriptional activity
-
DOI 10.1006/bbrc.2000.2704
-
Kawai, S., Faucheu, C., Gallea, S., Spinella-Jaegle, S., Atfi, A., Baron, R. and Roman, S. (2000) Mouse smad8 phosphorylation downstream of BMP receptors ALK-2, ALK-3, and ALK-6 induces its association with Smad4 and transcriptional activity. Biochem. Biophys. Res. Commun., 271, 682-687. (Pubitemid 30444688)
-
(2000)
Biochemical and Biophysical Research Communications
, vol.271
, Issue.3
, pp. 682-687
-
-
Kawai, S.1
Faucheu, C.2
Gallea, S.3
Spinella-Jaegle, S.4
Atfi, A.5
Baron, R.6
Roman, S.R.7
-
5
-
-
0030300115
-
MADR2 is a substrate of the TGFβ receptor and its phosphorylation is required for nuclear accumulation and signaling
-
DOI 10.1016/S0092-8674(00)81817-6
-
Macías-Silva, M., Abdollah, S., Hoodless, P., Pirone, R., Attisano, L. and Wrana, J. (1996) MADR2 is a substrate of the TGFbeta receptor and its phosphorylation is required for nuclear accumulation and signaling. Cell, 87, 1215-1224. (Pubitemid 27010105)
-
(1996)
Cell
, vol.87
, Issue.7
, pp. 1215-1224
-
-
Macias-Silva, M.1
Abdollah, S.2
Hoodless, P.A.3
Pirone, R.4
Attisano, L.5
Wrana, J.L.6
-
6
-
-
0029786212
-
Receptor-associated Mad homologues synergize as effectors of the TGF-β response
-
DOI 10.1038/383168a0
-
Zhang, Y., Feng, X., We, R. and Derynck, R. (1996) Receptor-associated Mad homologues synergize as effectors of the TGF-beta response. Nature, 383, 168-172. (Pubitemid 26303979)
-
(1996)
Nature
, vol.383
, Issue.6596
, pp. 168-172
-
-
Zhang, Y.1
Feng, X.-H.2
Wu, R.-Y.3
Derynck, R.4
-
7
-
-
0030593038
-
DPC4, a candidate tumor suppressor gene at human chromosome 18q21.1
-
Hahn, S.A., Schutte, M., Hoque, A.T., Moskaluk, C.A., da Costa, L.T., Rozenblum, E., Weinstein, C.L., Fischer, A., Yeo, C.J., Hruban, R.H. et al. (1996) DPC4, a candidate tumor suppressor gene at human chromosome 18q21.1. Science, 271, 350-353.
-
(1996)
Science
, vol.271
, pp. 350-353
-
-
Hahn, S.A.1
Schutte, M.2
Hoque, A.T.3
Moskaluk, C.A.4
Da Costa, L.T.5
Rozenblum, E.6
Weinstein, C.L.7
Fischer, A.8
Yeo, C.J.9
Hruban, R.H.10
-
8
-
-
79951512852
-
SMAD4-dependent barrier constrains prostate cancer growth and metastatic progression
-
Ding, Z., Wu, C.J., Chu, G.C., Xiao, Y., Ho, D., Zhang, J., Perry, S.R., Labrot, E.S., Wu, X., Lis, R. et al. SMAD4-dependent barrier constrains prostate cancer growth and metastatic progression. Nature, 470, 269-273.
-
Nature
, vol.470
, pp. 269-273
-
-
Ding, Z.1
Wu, C.J.2
Chu, G.C.3
Xiao, Y.4
Ho, D.5
Zhang, J.6
Perry, S.R.7
Labrot, E.S.8
Wu, X.9
Lis, R.10
-
9
-
-
0032823144
-
Inactivation of both alleles of the DPC4/SMAD4 gene in advanced colorectal cancers: Identification of seven novel somatic mutations in tumors from Japanese patients
-
DOI 10.1016/S1383-5726(99)00003-5, PII S1383572699000035
-
Koyama, M., Ito, M., Nagai, H., Emi, M. and Moriyama, Y. (1999) Inactivation of both alleles of the DPC4/SMAD4 gene in advanced colorectal cancers: identification of seven novel somatic mutations in tumors from Japanese patients. Mutat. Res., 406, 71-77. (Pubitemid 29429669)
-
(1999)
Mutation Research - Mutation Research Genomics
, vol.406
, Issue.2-4
, pp. 71-77
-
-
Koyama, M.1
Ito, M.2
Nagai, H.3
Emi, M.4
Moriyama, Y.5
-
10
-
-
0035234009
-
Characterization of the mutations of the K-ras, p53, p16, and SMAD4 genes in 15 human pancreatic cancer cell lines
-
Sun, C., Yamato, T., Furukawa, T., Ohnishi, Y., Kijima, H. and Horii, A. (2001) Characterization of the mutations of the K-ras, p53, p16, and SMAD4 genes in 15 human pancreatic cancer cell lines. Oncol. Rep., 8, 89-92. (Pubitemid 33758206)
-
(2001)
Oncology Reports
, vol.8
, Issue.1
, pp. 89-92
-
-
Horii, A.1
-
11
-
-
0035865229
-
The amino terminus of Smads permits transcriptional specificity
-
DOI 10.1006/dbio.2000.0111
-
Fortuno, E.r., LeSueur, J. and Graff, J. (2001) The amino terminus of Smads permits transcriptional specificity. Dev. Biol., 230, 110-124. (Pubitemid 32171411)
-
(2001)
Developmental Biology
, vol.230
, Issue.2
, pp. 110-124
-
-
Fortuno III, E.S.1
LeSueur, J.A.2
Graff, J.M.3
-
12
-
-
0032483544
-
Crystal structure of a Smad MH1 domain bound to DNA: Insights on DNA binding in TGF-β signaling
-
DOI 10.1016/S0092-8674(00)81600-1
-
Shi, Y., Wang, Y., Jayaraman, L., Yang, H., Massagué, J. and Pavletich, N. (1998) Crystal structure of a Smad MH1 domain bound to DNA: insights on DNA binding in TGF-beta signaling. Cell, 94, 585-594. (Pubitemid 28427577)
-
(1998)
Cell
, vol.94
, Issue.5
, pp. 585-594
-
-
Shi, Y.1
Wang, Y.-F.2
Jayaraman, L.3
Yang, H.4
Massague, J.5
Pavletich, N.P.6
-
13
-
-
4444250157
-
Structural basis of heteromeric Smad protein assembly in TGF-β signaling
-
DOI 10.1016/j.molcel.2004.07.016, PII S1097276504004381
-
Chacko, B., Qin, B., Tiwari, A., Shi, G., Lam, S., Hayward, L., De Caestecker, M. and Lin, K. (2004) Structural basis of heteromeric smad protein assembly in TGF-beta signaling. Mol. Cell., 15, 813-823. (Pubitemid 39194910)
-
(2004)
Molecular Cell
, vol.15
, Issue.5
, pp. 813-823
-
-
Chacko, B.M.1
Qin, B.Y.2
Tiwari, A.3
Shi, G.4
Lam, S.5
Hayward, L.J.6
De Caestecker, M.7
Lin, K.8
-
14
-
-
18244362844
-
Crystal structure of a phosphorylated Smad2: Recognition of phosphoserine by the MH2 domain and insights on Smad function in TGF-β signaling
-
DOI 10.1016/S1097-2765(01)00421-X
-
Wu, J., Hu, M., Chai, J., Seoane, J., Huse, M., Li, C., Rigotti, D., Kyin, S., Muir, T., Fairman, R. et al. (2001) Crystal structure of a phosphorylated Smad2. Recognition of phosphoserine by the MH2 domain and insights on Smad function in TGF-beta signaling. Mol. Cell, 8, 1277-1289. (Pubitemid 34084999)
-
(2001)
Molecular Cell
, vol.8
, Issue.6
, pp. 1277-1289
-
-
Wu, J.-W.1
Hu, M.2
Chai, J.3
Seoane, J.4
Huse, M.5
Li, C.6
Rigotti, D.J.7
Kyin, S.8
Muir, T.W.9
Fairman, R.10
Massague, J.11
Shi, Y.12
-
15
-
-
0034252221
-
Regulation of intracellular dynamics of Smad4 by its leucine-rich nuclear export signal
-
Watanabe, M., Masuyama, N., Fukuda, M. and Nishida, E. (2000) Regulation of intracellular dynamics of Smad4 by its leucine-rich nuclear export signal. EMBO Rep., 1, 176-182.
-
(2000)
EMBO Rep.
, vol.1
, pp. 176-182
-
-
Watanabe, M.1
Masuyama, N.2
Fukuda, M.3
Nishida, E.4
-
16
-
-
0037455715
-
An extended bipartite nuclear localization signal in Smad4 is required for its nuclear import and transcriptional activity
-
DOI 10.1038/sj.onc.1206212
-
Xiao, Z., Latek, R. and Lodish, H.F. (2003) An extended bipartite nuclear localization signal in Smad4 is required for its nuclear import and transcriptional activity. Oncogene, 22, 1057-1069. (Pubitemid 36313149)
-
(2003)
Oncogene
, vol.22
, Issue.7
, pp. 1057-1069
-
-
Xiao, Z.1
Latek, R.2
Lodish, H.F.3
-
17
-
-
0032101178
-
Direct binding of Smad3 and Smad4 to critical TGFβ-inducible elements in the promoter of human plasminogen activator inhibitor-type 1 gene
-
DOI 10.1093/emboj/17.11.3091
-
Dennler, S., Itoh, S., Vivien, D., ten Dijke, P., Huet, S. and Gauthier, J. (1998) Direct binding of Smad3 and Smad4 to critical TGF beta-inducible elements in the promoter of human plasminogen activator inhibitor-type 1 gene. EMBO J., 17, 3091-3100. (Pubitemid 28254381)
-
(1998)
EMBO Journal
, vol.17
, Issue.11
, pp. 3091-3100
-
-
Dennler, S.1
Itoh, S.2
Vivien, D.3
Dijke, P.T.4
Huet, S.5
Gauthier, J.-M.6
-
18
-
-
1842457724
-
Transcriptional regulation of BMP4 synexpression in transgenic Xenopus
-
DOI 10.1038/sj.emboj.7600101
-
Karaulanov, E., Knochel, W. and Niehrs, C. (2004) Transcriptional regulation of BMP4 synexpression in transgenic Xenopus. EMBO J., 23, 844-856. (Pubitemid 38418751)
-
(2004)
EMBO Journal
, vol.23
, Issue.4
, pp. 844-856
-
-
Karaulanov, E.1
Knochel, W.2
Niehrs, C.3
-
19
-
-
0033996601
-
Characterization of a bone morphogenetic protein-responsive Smad- binding element
-
Kusanagi, K., Inoue, H., Ishidou, Y., Mishima, H.K., Kawabata, M. and Miyazono, K. (2000) Characterization of a bone morphogenetic protein-responsive Smad-binding element. Mol. Biol. Cell, 11, 555-565. (Pubitemid 30112165)
-
(2000)
Molecular Biology of the Cell
, vol.11
, Issue.2
, pp. 555-565
-
-
Kusanagi, K.1
Inoue, H.2
Ishidou, Y.3
Mishima, H.K.4
Kawabata, M.5
Miyazono, K.6
-
20
-
-
0034703087
-
Participation of Smad2, Smad3, and Smad4 in transforming growth factor β (TGF-β)-induced activation of Smad7: The TGF-β response element of the promoter requires functional Smad binding element and E-box sequences for transcriptional regulation
-
DOI 10.1074/jbc.M003282200
-
Stopa, M., Anhuf, D., Terstegen, L., Gatsios, P., Gressner, A.M. and Dooley, S. (2000) Participation of Smad2, Smad3, and Smad4 in transforming growth factor beta (TGF-beta)-induced activation of Smad7. THE TGF-beta response element of the promoter requires functional Smad binding element and E-box sequences for transcriptional regulation. J. Biol. Chem., 275, 29308-29317. (Pubitemid 32043801)
-
(2000)
Journal of Biological Chemistry
, vol.275
, Issue.38
, pp. 29308-29317
-
-
Stopa, M.1
Anhuf, D.2
Terstegen, L.3
Gatsios, P.4
Gressner, A.M.5
Dooley, S.6
-
21
-
-
0031589009
-
Prediction of gene expression specificity by promoter sequence patterns
-
Fujibuchi, W. and Kanehisa, M. (1997) Prediction of gene expression specificity by promoter sequence patterns. DNA Res., 4, 81-90. (Pubitemid 127699010)
-
(1997)
DNA Research
, vol.4
, Issue.2
, pp. 81-90
-
-
Fujibuchi, W.1
Kanehisa, M.2
-
22
-
-
77953728005
-
Structure of Smad1 MH1/DNA complex reveals distinctive rearrangements of BMP and TGF-beta effectors
-
BabuRajendran, N., Palasingam, P., Narasimhan, K., Sun, W., Prabhakar, S., Jauch, R. and Kolatkar, P.R. (2010) Structure of Smad1 MH1/DNA complex reveals distinctive rearrangements of BMP and TGF-beta effectors. Nucleic Acids Res., 38, 3477-3488.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 3477-3488
-
-
Baburajendran, N.1
Palasingam, P.2
Narasimhan, K.3
Sun, W.4
Prabhakar, S.5
Jauch, R.6
Kolatkar, P.R.7
-
23
-
-
0032516862
-
Identification and functional characterization of a smad binding element (SBE) in the JunB promoter that acts as a transforming growth factor-β, activin, and bone morphogenetic protein-inducible enhancer
-
DOI 10.1074/jbc.273.33.21145
-
Jonk, L., Itoh, S., Heldin, C., ten Dijke, P. and Kruijer, W. (1998) Identification and functional characterization of a Smad binding element (SBE) in the JunB promoter that acts as a transforming growth factor-beta, activin, and bone morphogenetic protein-inducible enhancer. J. Biol. Chem., 273, 21145-21152. (Pubitemid 28385403)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.33
, pp. 21145-21152
-
-
Jonk, L.J.C.1
Itoh, S.2
Heldin, C.-H.3
Ten Dijke, P.4
Kruijer, W.5
-
24
-
-
0036479133
-
Direct binding of Smad1 and Smad4 to two distinct motifs mediates bone morphogenetic protein-specific transcriptional activation of Id1 gene
-
DOI 10.1074/jbc.M106826200
-
López-Rovira, T., Chalaux, E., Massagué, J., Rosa, J. and Ventura, F. (2002) Direct binding of Smad1 and Smad4 to two distinct motifs mediates bone morphogenetic protein-specific transcriptional activation of Id1 gene. J. Biol. Chem., 277, 3176-3185. (Pubitemid 34953179)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.5
, pp. 3176-3185
-
-
Lopez-Rovira, T.1
Chalaux, E.2
Massague, J.3
Rosa, J.L.4
Ventura, F.5
-
25
-
-
0032014216
-
Human Smad3 and Smad4 are sequence-specific transcription activators
-
Zawel, L., Dai, J., Buckhaults, P., Zhou, S., Kinzler, K., Vogelstein, B. and Kern, S. (1998) Human Smad3 and Smad4 are sequence-specific transcription activators. Mol. Cell., 1, 611-617. (Pubitemid 128374697)
-
(1998)
Molecular Cell
, vol.1
, Issue.4
, pp. 611-617
-
-
Zawel, L.1
Le Dai, J.2
Buckhaults, P.3
Zhou, S.4
Kinzler, K.W.5
Vogelstein, B.6
Kern, S.E.7
-
26
-
-
0033584854
-
Regulation of Smad7 promoter by direct association with Smad3 and Smad4
-
Nagarajan, R., Zhang, J., Li, W. and Chen, Y. (1999) Regulation of Smad7 promoter by direct association with Smad3 and Smad4. J. Biol. Chem., 274, 33412-33418. (Pubitemid 129511646)
-
(1999)
Journal of Biological Chemistry
, vol.274
, Issue.47
, pp. 33412-33418
-
-
Nagarajan, R.P.1
Zhang, J.2
Li, W.3
Chen, Y.4
-
27
-
-
73449104552
-
Crystal optimization and preliminary diffraction data analysis of the Smad1 MH1 domain bound to a palindromic SBE DNA element
-
Baburajendran, N., Palasingam, P., Ng, C.K., Jauch, R. and Kolatkar, P.R. (2009) Crystal optimization and preliminary diffraction data analysis of the Smad1 MH1 domain bound to a palindromic SBE DNA element. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 65, 1105-1109.
-
(2009)
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.
, vol.65
, pp. 1105-1109
-
-
Baburajendran, N.1
Palasingam, P.2
Ng, C.K.3
Jauch, R.4
Kolatkar, P.R.5
-
28
-
-
38649124339
-
Crystal structure and DNA binding of the homeodomain of the stem cell transcription factor Nanog
-
Jauch, R., Ng, C.K., Saikatendu, K.S., Stevens, R.C. and Kolatkar, P.R. (2008) Crystal structure and DNA binding of the homeodomain of the stem cell transcription factor Nanog. J. Mol. Biol., 376, 758-770.
-
(2008)
J. Mol. Biol.
, vol.376
, pp. 758-770
-
-
Jauch, R.1
Ng, C.K.2
Saikatendu, K.S.3
Stevens, R.C.4
Kolatkar, P.R.5
-
29
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
DOI 10.1016/S0076-6879(97)76066-X
-
Otwinowski, Z. and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol., 276, 307-326. (Pubitemid 27085611)
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
30
-
-
11844301261
-
Recent developments in the PHENIX software for automated crystallographic structure determination
-
DOI 10.1107/S0909049503024130
-
Adams, P.D., Gopal, K., Grosse-Kunstleve, R.W., Hung, L.W., Ioerger, T.R., McCoy, A.J., Moriarty, N.W., Pai, R.K., Read, R.J., Romo, T.D. et al. (2004) Recent developments in the PHENIX software for automated crystallographic structure determination. J. Synchrotron. Radiat., 11, 53-55. (Pubitemid 40085633)
-
(2004)
Journal of Synchrotron Radiation
, vol.11
, Issue.1
, pp. 53-55
-
-
Adams, P.D.1
Gopal, K.2
Grosse-Kunstleve, R.W.3
Hung, L.-W.4
Ioerger, T.R.5
McCoy, A.J.6
Moriarty, N.W.7
Pai, R.K.8
Read, R.J.9
Romo, T.D.10
Sacchettini, J.C.11
Sauter, N.K.12
Storoni, L.C.13
Terwilliger, T.C.14
-
31
-
-
23844546311
-
Likelihood-enhanced fast translation functions
-
DOI 10.1107/S0907444905001617
-
McCoy, A.J., Grosse-Kunstleve, R.W., Storoni, L.C. and Read, R.J. (2005) Likelihood-enhanced fast translation functions. Acta Crystallogr. D Biol. Crystallogr., 61, 458-464. (Pubitemid 43934606)
-
(2005)
Acta Crystallographica Section D: Biological Crystallography
, vol.61
, Issue.4
, pp. 458-464
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Storoni, L.C.3
Read, R.J.4
-
32
-
-
0030817618
-
Combining constraints for electron-density modification
-
DOI 10.1016/S0076-6879(97)77006-X
-
Zhang, K.Y., Cowtan, K. and Main, P. (1997) Combining constraints for electron-density modification. Methods Enzymol., 277, 53-64. (Pubitemid 27390916)
-
(1997)
Methods in Enzymology
, vol.277
, pp. 53-64
-
-
Zhang, K.Y.J.1
Cowtan, K.2
Main, P.3
-
34
-
-
33748337934
-
The Buccaneer software for automated model building. 1. Tracing protein chains
-
DOI 10.1107/S0907444906022116
-
Cowtan, K. (2006) The Buccaneer software for automated model building. 1. Tracing protein chains. Acta Crystallogr. D Biol. Crystallogr., 62, 1002-1011. (Pubitemid 44337374)
-
(2006)
Acta Crystallographica Section D: Biological Crystallography
, vol.62
, Issue.9
, pp. 1002-1011
-
-
Cowtan, K.1
-
36
-
-
24644451703
-
A robust bulk-solvent correction and anisotropic scaling procedure
-
DOI 10.1107/S0907444905007894
-
Afonine, P.V., Grosse-Kunstleve, R.W. and Adams, P.D. (2005) A robust bulk-solvent correction and anisotropic scaling procedure. Acta Crystallogr. D Biol. Crystallogr., 61, 850-855. (Pubitemid 43943146)
-
(2005)
Acta Crystallographica Section D: Biological Crystallography
, vol.61
, Issue.7
, pp. 850-855
-
-
Afonine, P.V.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
-
38
-
-
70450261721
-
Conformational analysis of nucleic acids revisited: Curves+
-
Lavery, R., Moakher, M., Maddocks, J.H., Petkeviciute, D. and Zakrzewska, K. (2009) Conformational analysis of nucleic acids revisited: Curves+. Nucleic Acids Res., 37, 5917-5929.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 5917-5929
-
-
Lavery, R.1
Moakher, M.2
Maddocks, J.H.3
Petkeviciute, D.4
Zakrzewska, K.5
-
39
-
-
50349085962
-
3DNA: A versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures
-
Lu, X.J. and Olson, W.K. (2008) 3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures. Nat. Protoc., 3, 1213-1227.
-
(2008)
Nat. Protoc.
, vol.3
, pp. 1213-1227
-
-
Lu, X.J.1
Olson, W.K.2
-
40
-
-
0034740591
-
TGFβ and BMP-2 activation of the OPN promoter: Roles of Smad- and Hox-binding elements
-
DOI 10.1006/excr.2000.5074
-
Hullinger, T.G., Pan, Q., Viswanathan, H.L. and Somerman, M.J. (2001) TGFbeta and BMP-2 activation of the OPN promoter: roles of smad-and hox-binding elements. Exp. Cell Res., 262, 69-74. (Pubitemid 32989009)
-
(2001)
Experimental Cell Research
, vol.262
, Issue.1
, pp. 69-74
-
-
Hullinger, T.G.1
Pan, Q.2
Viswanathan, H.L.3
Somerman, M.J.4
-
41
-
-
0038820062
-
Features of a Smad3 MH1-DNA complex: Roles of water and zinc in DNA binding
-
DOI 10.1074/jbc.C300134200
-
Chai, J., Wu, J., Yan, N., Massagué, J., Pavletich, N. and Shi, Y. (2003) Features of a Smad3 MH1-DNA complex. Roles of water and zinc in DNA binding. J. Biol. Chem., 278, 20327-20331. (Pubitemid 36799232)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.22
, pp. 20327-20331
-
-
Chai, J.1
Wu, J.-W.2
Yan, N.3
Massague, J.4
Pavletich, N.P.5
Shi, Y.6
-
42
-
-
1442352122
-
Tumor-derived C-terminal mutations of Smad4 with decreased DNA binding activity and enhanced intramolecular interaction
-
DOI 10.1038/sj.onc.1207219
-
Kuang, C. and Chen, Y. (2004) Tumor-derived C-terminal mutations of Smad4 with decreased DNA binding activity and enhanced intramolecular interaction. Oncogene, 23, 1021-1029. (Pubitemid 38269956)
-
(2004)
Oncogene
, vol.23
, Issue.5
, pp. 1021-1029
-
-
Kuang, C.1
Chen, Y.2
-
43
-
-
0034660019
-
Functional mapping of the MH1 DNA-binding domain of DPC4/SMAD4
-
Jones, J.B. and Kern, S.E. (2000) Functional mapping of the MH1 DNA-binding domain of DPC4/SMAD4. Nucleic Acids Res., 28, 2363-2368. (Pubitemid 30349041)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.12
, pp. 2363-2368
-
-
Jones, J.B.1
Kern, S.E.2
-
44
-
-
70350686719
-
The role of DNA shape in protein-DNA recognition
-
Rohs, R., West, S.M., Sosinsky, A., Liu, P., Mann, R.S. and Honig, B. (2009) The role of DNA shape in protein-DNA recognition. Nature, 461, 1248-1253.
-
(2009)
Nature
, vol.461
, pp. 1248-1253
-
-
Rohs, R.1
West, S.M.2
Sosinsky, A.3
Liu, P.4
Mann, R.S.5
Honig, B.6
-
45
-
-
79957592228
-
Conversion of Sox17 into a pluripotency reprogramming factor by reengineering its association with Oct4 on DNA
-
Jauch, R., Aksoy, I., Hutchins, A.P., Ng, C.K., Tian, X.F., Chen, J., Palasingam, P., Robson, P., Stanton, L.W. and Kolatkar, P.R. (2011) Conversion of Sox17 into a pluripotency reprogramming factor by reengineering its association with Oct4 on DNA. Stem Cells, 29, 940-951.
-
(2011)
Stem Cells
, vol.29
, pp. 940-951
-
-
Jauch, R.1
Aksoy, I.2
Hutchins, A.P.3
Ng, C.K.4
Tian, X.F.5
Chen, J.6
Palasingam, P.7
Robson, P.8
Stanton, L.W.9
Kolatkar, P.R.10
-
46
-
-
78651107675
-
Nucleosome-mediated cooperativity between transcription factors
-
Mirny, L.A. (2011) Nucleosome-mediated cooperativity between transcription factors. Proc. Natl Acad. Sci. USA, 107, 22534-22539.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 22534-22539
-
-
Mirny, L.A.1
-
47
-
-
27644494876
-
Smad transcription factors
-
DOI 10.1101/gad.1350705
-
Massague, J., Seoane, J. and Wotton, D. (2005) Smad transcription factors. Genes Dev., 19, 2783-2810. (Pubitemid 41739965)
-
(2005)
Genes and Development
, vol.19
, Issue.23
, pp. 2783-2810
-
-
Massague, J.1
Seoane, J.2
Wotton, D.3
-
48
-
-
33751003527
-
Indirect readout: Detection of optimized subsequences and calculation of relative binding affinities using different DNA elastic potentials
-
DOI 10.1093/nar/gkl683
-
Becker, N.B., Wolff, L. and Everaers, R. (2006) Indirect readout: detection of optimized subsequences and calculation of relative binding affinities using different DNA elastic potentials. Nucleic Acids Res., 34, 5638-5649. (Pubitemid 44742451)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.19
, pp. 5638-5649
-
-
Becker, N.B.1
Wolff, L.2
Everaers, R.3
-
49
-
-
0037079572
-
Free-energy component analysis of 40 protein-DNA complexes: A consensus view on the thermodynamics of binding at the molecular level
-
DOI 10.1002/jcc.10009
-
Jayaram, B., McConnell, K., Dixit, S.B., Das, A. and Beveridge, D.L. (2002) Free-energy component analysis of 40 protein-DNA complexes: a consensus view on the thermodynamics of binding at the molecular level. J. Comput. Chem., 23, 1-14. (Pubitemid 34063125)
-
(2002)
Journal of Computational Chemistry
, vol.23
, Issue.1
, pp. 1-14
-
-
Jayaram, B.1
McConnell, K.2
Dixit, S.B.3
Das, A.4
Beveridge, D.L.5
-
50
-
-
0030736323
-
Protein-DNA recognition complexes: Conservation of structure and binding energy in the transition state
-
Jen-Jacobson, L. (1997) Protein-DNA recognition complexes: conservation of structure and binding energy in the transition state. Biopolymers, 44, 153-180.
-
(1997)
Biopolymers
, vol.44
, pp. 153-180
-
-
Jen-Jacobson, L.1
-
51
-
-
33750621840
-
Indirect Readout of DNA Sequence by Proteins: The Roles of DNA Sequence-Dependent Intrinsic and Extrinsic Forces
-
DOI 10.1016/S0079-6603(06)81004-4, PII S0079660306810044, Progress in Nuclei Acid Research and Molecular Biology
-
Koudelka, G.B., Mauro, S.A. and Ciubotaru, M. (2006) Indirect readout of DNA sequence by proteins: the roles of DNA sequence-dependent intrinsic and extrinsic forces. Prog. Nucleic Acid Res. Mol. Biol., 81, 143-177. (Pubitemid 44691673)
-
(2006)
Progress in Nucleic Acid Research and Molecular Biology
, vol.81
, pp. 143-177
-
-
Koudelka, G.B.1
Mauro, S.A.2
Ciubotaru, M.3
-
52
-
-
77954990538
-
Structure of a thyroid hormone receptor DNA-binding domain homodimer bound to an inverted palindrome DNA response element
-
Chen, Y. and Young, M.A. Structure of a thyroid hormone receptor DNA-binding domain homodimer bound to an inverted palindrome DNA response element. Mol. Endocrinol., 24, 1650-1664.
-
Mol. Endocrinol.
, vol.24
, pp. 1650-1664
-
-
Chen, Y.1
Young, M.A.2
|