-
1
-
-
34249299791
-
The complex language of chromatin regulation during transcription
-
Berger SL, (2007) The complex language of chromatin regulation during transcription. Nature 447: 407-412.
-
(2007)
Nature
, vol.447
, pp. 407-412
-
-
Berger, S.L.1
-
2
-
-
33847076849
-
Chromatin modifications and their function
-
Kouzarides T, (2007) Chromatin modifications and their function. Cell 128: 693-705.
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
3
-
-
11144332565
-
Histone demethylation mediated by the nuclear amine oxidase homolog LSD1
-
Shi Y, Lan F, Matson C, Mulligan P, Whetstine JR, et al. (2004) Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell 119: 941-953.
-
(2004)
Cell
, vol.119
, pp. 941-953
-
-
Shi, Y.1
Lan, F.2
Matson, C.3
Mulligan, P.4
Whetstine, J.R.5
-
4
-
-
16344368814
-
Histone demethylation catalysed by LSD1 is a flavin-dependent oxidative process
-
Forneris F, Binda C, Vanoni MA, Mattevi A, Battaglioli E, (2005) Histone demethylation catalysed by LSD1 is a flavin-dependent oxidative process. FEBS Lett 579: 2203-2207.
-
(2005)
FEBS Lett
, vol.579
, pp. 2203-2207
-
-
Forneris, F.1
Binda, C.2
Vanoni, M.A.3
Mattevi, A.4
Battaglioli, E.5
-
5
-
-
34548513035
-
P53 is regulated by the lysine demethylase LSD1
-
Huang J, Sengupta R, Espejo AB, Lee MG, Dorsey JA, et al. (2007) p53 is regulated by the lysine demethylase LSD1. Nature 449: 105-108.
-
(2007)
Nature
, vol.449
, pp. 105-108
-
-
Huang, J.1
Sengupta, R.2
Espejo, A.B.3
Lee, M.G.4
Dorsey, J.A.5
-
6
-
-
50249167778
-
P53-targeted LSD1 functions in repression of chromatin structure and transcription in vivo
-
Tsai WW, Nguyen TT, Shi Y, Barton MC, (2008) p53-targeted LSD1 functions in repression of chromatin structure and transcription in vivo. Mol Cell Biol 28: 5139-5146.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 5139-5146
-
-
Tsai, W.W.1
Nguyen, T.T.2
Shi, Y.3
Barton, M.C.4
-
7
-
-
58149156264
-
The lysine demethylase LSD1 (KDM1) is required for maintenance of global DNA methylation
-
Wang J, Hevi S, Kurash JK, Lei H, Gay F, et al. (2009) The lysine demethylase LSD1 (KDM1) is required for maintenance of global DNA methylation. Nat Genet 41: 125-129.
-
(2009)
Nat Genet
, vol.41
, pp. 125-129
-
-
Wang, J.1
Hevi, S.2
Kurash, J.K.3
Lei, H.4
Gay, F.5
-
8
-
-
79551519643
-
Demethylation of RB Regulator MYPT1 by Histone Demethylase LSD1 Promotes Cell Cycle Progression in Cancer Cells
-
Cho HS, Suzuki T, Dohmae N, Hayami S, Unoki M, et al. (2011) Demethylation of RB Regulator MYPT1 by Histone Demethylase LSD1 Promotes Cell Cycle Progression in Cancer Cells. Cancer Res 71: 655-660.
-
(2011)
Cancer Res
, vol.71
, pp. 655-660
-
-
Cho, H.S.1
Suzuki, T.2
Dohmae, N.3
Hayami, S.4
Unoki, M.5
-
9
-
-
68749108259
-
LSD1 is a subunit of the NuRD complex and targets the metastasis programs in breast cancer
-
Wang Y, Zhang H, Chen Y, Sun Y, Yang F, et al. (2009) LSD1 is a subunit of the NuRD complex and targets the metastasis programs in breast cancer. Cell 138: 660-672.
-
(2009)
Cell
, vol.138
, pp. 660-672
-
-
Wang, Y.1
Zhang, H.2
Chen, Y.3
Sun, Y.4
Yang, F.5
-
10
-
-
77953107054
-
The SNAG domain of Snail1 functions as a molecular hook for recruiting lysine-specific demethylase 1
-
Lin Y, Wu Y, Li J, Dong C, Ye X, et al. (2010) The SNAG domain of Snail1 functions as a molecular hook for recruiting lysine-specific demethylase 1. EMBO J 29: 1803-1816.
-
(2010)
EMBO J
, vol.29
, pp. 1803-1816
-
-
Lin, Y.1
Wu, Y.2
Li, J.3
Dong, C.4
Ye, X.5
-
11
-
-
25144519737
-
An essential role for CoREST in nucleosomal histone 3 lysine 4 demethylation
-
Lee MG, Wynder C, Cooch N, Shiekhattar R, (2005) An essential role for CoREST in nucleosomal histone 3 lysine 4 demethylation. Nature 437: 432-435.
-
(2005)
Nature
, vol.437
, pp. 432-435
-
-
Lee, M.G.1
Wynder, C.2
Cooch, N.3
Shiekhattar, R.4
-
12
-
-
67649834041
-
LSD1-mediated epigenetic modification is required for TAL1 function and hematopoiesis
-
Hu X, Li X, Valverde K, Fu X, Noguchi C, et al. (2009) LSD1-mediated epigenetic modification is required for TAL1 function and hematopoiesis. Proc Natl Acad Sci U S A 106: 10141-10146.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 10141-10146
-
-
Hu, X.1
Li, X.2
Valverde, K.3
Fu, X.4
Noguchi, C.5
-
13
-
-
34447519212
-
The lysine-specific demethylase 1 is required for cell proliferation in both p53-dependent and -independent manners
-
Scoumanne A, Chen X, (2007) The lysine-specific demethylase 1 is required for cell proliferation in both p53-dependent and-independent manners. J Biol Chem 282: 15471-15475.
-
(2007)
J Biol Chem
, vol.282
, pp. 15471-15475
-
-
Scoumanne, A.1
Chen, X.2
-
14
-
-
77956913456
-
Histone Demethylase LSD1 Regulates Adipogenesis
-
Musri MM, Carmona MC, Hanzu FA, Kaliman P, Gomis R, et al. (2010) Histone Demethylase LSD1 Regulates Adipogenesis. Journal of Biological Chemistry 285: 30034-30041.
-
(2010)
Journal of Biological Chemistry
, vol.285
, pp. 30034-30041
-
-
Musri, M.M.1
Carmona, M.C.2
Hanzu, F.A.3
Kaliman, P.4
Gomis, R.5
-
15
-
-
35348998671
-
Dynamic regulation of histone H3 methylation at lysine 4 in mammalian spermatogenesis
-
Godmann M, Auger V, Ferraroni-Aguiar V, Di Sauro A, Sette C, et al. (2007) Dynamic regulation of histone H3 methylation at lysine 4 in mammalian spermatogenesis. Biol Reprod 77: 754-764.
-
(2007)
Biol Reprod
, vol.77
, pp. 754-764
-
-
Godmann, M.1
Auger, V.2
Ferraroni-Aguiar, V.3
Di Sauro, A.4
Sette, C.5
-
16
-
-
77952011032
-
LSD1 is required for chromosome segregation during mitosis
-
Lv S, Bu W, Jiao H, Liu B, Zhu L, et al. (2010) LSD1 is required for chromosome segregation during mitosis. Eur J Cell Biol 89: 557-563.
-
(2010)
Eur J Cell Biol
, vol.89
, pp. 557-563
-
-
Lv, S.1
Bu, W.2
Jiao, H.3
Liu, B.4
Zhu, L.5
-
17
-
-
77956902055
-
Conversion of Mouse Epiblast Stem Cells to an Earlier Pluripotency State by Small Molecules
-
Ding S, Zhou HY, Li WL, Zhu SY, Joo JY, et al. (2010) Conversion of Mouse Epiblast Stem Cells to an Earlier Pluripotency State by Small Molecules. Journal of Biological Chemistry 285: 29676-29680.
-
(2010)
Journal of Biological Chemistry
, vol.285
, pp. 29676-29680
-
-
Ding, S.1
Zhou, H.Y.2
Li, W.L.3
Zhu, S.Y.4
Joo, J.Y.5
-
18
-
-
78049357469
-
Lysine-specific demethylase 1 regulates the embryonic transcriptome and CoREST stability
-
Foster CT, Dovey OM, Lezina L, Luo JL, Gant TW, et al. (2010) Lysine-specific demethylase 1 regulates the embryonic transcriptome and CoREST stability. Mol Cell Biol 30: 4851-4863.
-
(2010)
Mol Cell Biol
, vol.30
, pp. 4851-4863
-
-
Foster, C.T.1
Dovey, O.M.2
Lezina, L.3
Luo, J.L.4
Gant, T.W.5
-
19
-
-
62449197931
-
Lysine-specific demethylase 1 is strongly expressed in poorly differentiated neuroblastoma: implications for therapy
-
Schulte JH, Lim S, Schramm A, Friedrichs N, Koster J, et al. (2009) Lysine-specific demethylase 1 is strongly expressed in poorly differentiated neuroblastoma: implications for therapy. Cancer Res 69: 2065-2071.
-
(2009)
Cancer Res
, vol.69
, pp. 2065-2071
-
-
Schulte, J.H.1
Lim, S.2
Schramm, A.3
Friedrichs, N.4
Koster, J.5
-
20
-
-
65549121213
-
Cyclical chromatin looping and transcription factor association on the regulatory regions of the p21 (CDKN1A) gene in response to 1alpha,25-dihydroxyvitamin D3
-
Saramaki A, Diermeier S, Kellner R, Laitinen H, Vaisanen S, et al. (2009) Cyclical chromatin looping and transcription factor association on the regulatory regions of the p21 (CDKN1A) gene in response to 1alpha,25-dihydroxyvitamin D3. J Biol Chem 284: 8073-8082.
-
(2009)
J Biol Chem
, vol.284
, pp. 8073-8082
-
-
Saramaki, A.1
Diermeier, S.2
Kellner, R.3
Laitinen, H.4
Vaisanen, S.5
-
21
-
-
77950868547
-
Lysine-specific demethylase 1 (LSD1) is highly expressed in ER-negative breast cancers and a biomarker predicting aggressive biology
-
Lim S, Janzer A, Becker A, Zimmer A, Schule R, et al. (2010) Lysine-specific demethylase 1 (LSD1) is highly expressed in ER-negative breast cancers and a biomarker predicting aggressive biology. Carcinogenesis 31: 512-520.
-
(2010)
Carcinogenesis
, vol.31
, pp. 512-520
-
-
Lim, S.1
Janzer, A.2
Becker, A.3
Zimmer, A.4
Schule, R.5
-
22
-
-
34249934238
-
Inhibition of lysine-specific demethylase 1 by polyamine analogues results in reexpression of aberrantly silenced genes
-
Huang Y, Greene E, Murray Stewart T, Goodwin AC, Baylin SB, et al. (2007) Inhibition of lysine-specific demethylase 1 by polyamine analogues results in reexpression of aberrantly silenced genes. Proc Natl Acad Sci U S A 104: 8023-8028.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 8023-8028
-
-
Huang, Y.1
Greene, E.2
Murray Stewart, T.3
Goodwin, A.C.4
Baylin, S.B.5
-
23
-
-
24144462170
-
LSD1 demethylates repressive histone marks to promote androgen-receptor-dependent transcription
-
Metzger E, Wissmann M, Yin N, Muller JM, Schneider R, et al. (2005) LSD1 demethylates repressive histone marks to promote androgen-receptor-dependent transcription. Nature 437: 436-439.
-
(2005)
Nature
, vol.437
, pp. 436-439
-
-
Metzger, E.1
Wissmann, M.2
Yin, N.3
Muller, J.M.4
Schneider, R.5
-
24
-
-
33845762289
-
Androgen receptor coactivators lysine-specific histone demethylase 1 and four and a half LIM domain protein 2 predict risk of prostate cancer recurrence
-
Kahl P, Gullotti L, Heukamp LC, Wolf S, Friedrichs N, et al. (2006) Androgen receptor coactivators lysine-specific histone demethylase 1 and four and a half LIM domain protein 2 predict risk of prostate cancer recurrence. Cancer Res 66: 11341-11347.
-
(2006)
Cancer Res
, vol.66
, pp. 11341-11347
-
-
Kahl, P.1
Gullotti, L.2
Heukamp, L.C.3
Wolf, S.4
Friedrichs, N.5
-
25
-
-
0034722962
-
Nitrogen isotope effects as probes of the mechanism of D-amino acid oxidase
-
Kurtz KA, Rishavy MA, Cleland WW, Fitzpatrick PF, (2000) Nitrogen isotope effects as probes of the mechanism of D-amino acid oxidase. Journal of the American Chemical Society 122: 12896-12897.
-
(2000)
Journal of the American Chemical Society
, vol.122
, pp. 12896-12897
-
-
Kurtz, K.A.1
Rishavy, M.A.2
Cleland, W.W.3
Fitzpatrick, P.F.4
-
26
-
-
34547698945
-
Structural insights into the mechanism of amine oxidation by monoamine oxidases A and B
-
Edmondson DE, Binda C, Mattevi A, (2007) Structural insights into the mechanism of amine oxidation by monoamine oxidases A and B. Archives of Biochemistry and Biophysics 464: 269-276.
-
(2007)
Archives of Biochemistry and Biophysics
, vol.464
, pp. 269-276
-
-
Edmondson, D.E.1
Binda, C.2
Mattevi, A.3
-
27
-
-
0001319451
-
Radical Ideas About Monoamine-Oxidase
-
Silverman RB, (1995) Radical Ideas About Monoamine-Oxidase. Accounts of Chemical Research 28: 335-342.
-
(1995)
Accounts of Chemical Research
, vol.28
, pp. 335-342
-
-
Silverman, R.B.1
-
28
-
-
33746435258
-
Structural basis for CoREST-dependent demethylation of nucleosomes by the human LSD1 histone demethylase
-
Yang M, Gocke CB, Luo X, Borek D, Tomchick DR, et al. (2006) Structural basis for CoREST-dependent demethylation of nucleosomes by the human LSD1 histone demethylase. Mol Cell 23: 377-387.
-
(2006)
Mol Cell
, vol.23
, pp. 377-387
-
-
Yang, M.1
Gocke, C.B.2
Luo, X.3
Borek, D.4
Tomchick, D.R.5
-
29
-
-
34547132094
-
Structural basis of LSD1-CoREST selectivity in histone H3 recognition
-
Forneris F, Binda C, Adamo A, Battaglioli E, Mattevi A, (2007) Structural basis of LSD1-CoREST selectivity in histone H3 recognition. J Biol Chem 282: 20070-20074.
-
(2007)
J Biol Chem
, vol.282
, pp. 20070-20074
-
-
Forneris, F.1
Binda, C.2
Adamo, A.3
Battaglioli, E.4
Mattevi, A.5
-
30
-
-
23144457576
-
H++: a server for estimating pKas and adding missing hydrogens to macromolecules
-
Gordon JC, Myers JB, Folta T, Shoja V, Heath LS, et al. (2005) H++: a server for estimating pKas and adding missing hydrogens to macromolecules. Nucleic Acids Res 33: W368-371.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 368-371
-
-
Gordon, J.C.1
Myers, J.B.2
Folta, T.3
Shoja, V.4
Heath, L.S.5
-
31
-
-
3042524904
-
A Well-Behaved Electrostatic Potential Based Method Using Charge Restraints for Deriving Atomic Charges - the Resp Model
-
Bayly CI, Cieplak P, Cornell WD, Kollman PA, (1993) A Well-Behaved Electrostatic Potential Based Method Using Charge Restraints for Deriving Atomic Charges- the Resp Model. Journal of Physical Chemistry 97: 10269-10280.
-
(1993)
Journal of Physical Chemistry
, vol.97
, pp. 10269-10280
-
-
Bayly, C.I.1
Cieplak, P.2
Cornell, W.D.3
Kollman, P.A.4
-
32
-
-
23444454552
-
The Amber biomolecular simulation programs
-
Case DA, Cheatham TE 3rd, Darden T, Gohlke H, Luo R, et al. (2005) The Amber biomolecular simulation programs. J Comput Chem 26: 1668-1688.
-
(2005)
J Comput Chem
, vol.26
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham III, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
-
33
-
-
0001216964
-
A second generation force field for the simulation of proteins, nucleic acids, and organic molecules (vol 117, pg 5179, 1995)
-
Cornell WD, Cieplak P, Bayly CI, Gould IR, Merz KM, et al. (1996) A second generation force field for the simulation of proteins, nucleic acids, and organic molecules (vol 117, pg 5179, 1995). Journal of the American Chemical Society 118: 2309-2309.
-
(1996)
Journal of the American Chemical Society
, vol.118
, pp. 2309
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.5
-
34
-
-
0001398008
-
How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
-
Wang JM, Cieplak P, Kollman PA, (2000) How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? Journal of Computational Chemistry 21: 1049-1074.
-
(2000)
Journal of Computational Chemistry
, vol.21
, pp. 1049-1074
-
-
Wang, J.M.1
Cieplak, P.2
Kollman, P.A.3
-
35
-
-
33748518255
-
Comparison of multiple Amber force fields and development of improved protein backbone parameters
-
Hornak V, Abel R, Okur A, Strockbine B, Roitberg A, et al. (2006) Comparison of multiple Amber force fields and development of improved protein backbone parameters. Proteins 65: 712-725.
-
(2006)
Proteins
, vol.65
, pp. 712-725
-
-
Hornak, V.1
Abel, R.2
Okur, A.3
Strockbine, B.4
Roitberg, A.5
-
36
-
-
0004016501
-
Comparison of Simple Potential Functions for Simulating Liquid Water
-
Jorgensen WL, Chandrasekhar J, Madura JD, Impey RW, Klein ML, (1983) Comparison of Simple Potential Functions for Simulating Liquid Water. Journal of Chemical Physics 79: 926-935.
-
(1983)
Journal of Chemical Physics
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
37
-
-
33646940952
-
Numerical-Integration of Cartesian Equations of Motion of a System with Constraints - Molecular-Dynamics of N-Alkanes
-
Ryckaert JP, Ciccotti G, Berendsen HJC, (1977) Numerical-Integration of Cartesian Equations of Motion of a System with Constraints- Molecular-Dynamics of N-Alkanes. Journal of Computational Physics 23: 327-341.
-
(1977)
Journal of Computational Physics
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
38
-
-
33846823909
-
Particle Mesh Ewald - an N.Log(N) Method for Ewald Sums in Large Systems
-
Darden T, York D, Pedersen L, (1993) Particle Mesh Ewald- an N.Log(N) Method for Ewald Sums in Large Systems. Journal of Chemical Physics 98: 10089-10092.
-
(1993)
Journal of Chemical Physics
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
39
-
-
33750587438
-
Molecular-Dynamics with Coupling to an External Bath
-
Berendsen HJC, Postma JPM, van Gunsteren WF, Dinola A, Haak JR, (1984) Molecular-Dynamics with Coupling to an External Bath. Journal of Chemical Physics 81: 3684-3690.
-
(1984)
Journal of Chemical Physics
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
van Gunsteren, W.F.3
Dinola, A.4
Haak, J.R.5
-
41
-
-
84986527758
-
Imomm - a New Integrated Ab-Initio Plus Molecular Mechanics Geometry Optimization Scheme of Equilibrium Structures and Transition-States
-
Maseras F, Morokuma K, (1995) Imomm- a New Integrated Ab-Initio Plus Molecular Mechanics Geometry Optimization Scheme of Equilibrium Structures and Transition-States. Journal of Computational Chemistry 16: 1170-1179.
-
(1995)
Journal of Computational Chemistry
, vol.16
, pp. 1170-1179
-
-
Maseras, F.1
Morokuma, K.2
-
42
-
-
0001242209
-
Energetics using the single point IMOMO (integrated molecular orbital plus molecular orbital) calculations: Choices of computational levels and model system
-
Svensson M, Humbel S, Morokuma K, (1996) Energetics using the single point IMOMO (integrated molecular orbital plus molecular orbital) calculations: Choices of computational levels and model system. Journal of Chemical Physics 105: 3654-3661.
-
(1996)
Journal of Chemical Physics
, vol.105
, pp. 3654-3661
-
-
Svensson, M.1
Humbel, S.2
Morokuma, K.3
-
43
-
-
0033515394
-
A new ONIOM implementation in Gaussian98. Part I. The calculation of energies, gradients, vibrational frequencies and electric field derivatives
-
Dapprich S, Komaromi I, Byun KS, Morokuma K, Frisch MJ, (1999) A new ONIOM implementation in Gaussian98. Part I. The calculation of energies, gradients, vibrational frequencies and electric field derivatives. Journal of Molecular Structure-Theochem 461: 1-21.
-
(1999)
Journal of Molecular Structure-Theochem
, vol.461
, pp. 1-21
-
-
Dapprich, S.1
Komaromi, I.2
Byun, K.S.3
Morokuma, K.4
Frisch, M.J.5
-
44
-
-
0041468782
-
On the application of the IMOMO (integrated molecular orbital plus molecular orbital) method
-
Vreven T, Morokuma K, (2000) On the application of the IMOMO (integrated molecular orbital plus molecular orbital) method. Journal of Computational Chemistry 21: 1419-1432.
-
(2000)
Journal of Computational Chemistry
, vol.21
, pp. 1419-1432
-
-
Vreven, T.1
Morokuma, K.2
-
45
-
-
84962383337
-
The ONIOM-PCM method: Combining the hybrid molecular orbital method and the polarizable continuum model for solvation. Application to the geometry and properties of a merocyanine in solution
-
Vreven T, Mennucci B, da Silva CO, Morokuma K, Tomasi J, (2001) The ONIOM-PCM method: Combining the hybrid molecular orbital method and the polarizable continuum model for solvation. Application to the geometry and properties of a merocyanine in solution. Journal of Chemical Physics 115: 62-72.
-
(2001)
Journal of Chemical Physics
, vol.115
, pp. 62-72
-
-
Vreven, T.1
Mennucci, B.2
da Silva, C.O.3
Morokuma, K.4
Tomasi, J.5
-
46
-
-
0037473497
-
Geometry optimization with QM/MM, ONIOM, and other combined methods. I. Microiterations and constraints
-
Schlegel HB, Vreven T, Morokuma K, Farkas O, Frisch MJ, (2003) Geometry optimization with QM/MM, ONIOM, and other combined methods. I. Microiterations and constraints. Journal of Computational Chemistry 24: 760-769.
-
(2003)
Journal of Computational Chemistry
, vol.24
, pp. 760-769
-
-
Schlegel, H.B.1
Vreven, T.2
Morokuma, K.3
Farkas, O.4
Frisch, M.J.5
-
47
-
-
77956509704
-
Investigation of the catalytic mechanism of Sir2 enzyme with QM/MM approach: SN1 vs SN2?
-
Liang Z, Shi T, Ouyang S, Li H, Yu K, et al. (2010) Investigation of the catalytic mechanism of Sir2 enzyme with QM/MM approach: SN1 vs SN2? Journal of Physical Chemistry B 114: 11927-11933.
-
(2010)
Journal of Physical Chemistry B
, vol.114
, pp. 11927-11933
-
-
Liang, Z.1
Shi, T.2
Ouyang, S.3
Li, H.4
Yu, K.5
-
48
-
-
84986513644
-
A Combined Quantum-Mechanical and Molecular Mechanical Potential for Molecular-Dynamics Simulations
-
Field MJ, Bash PA, Karplus M, (1990) A Combined Quantum-Mechanical and Molecular Mechanical Potential for Molecular-Dynamics Simulations. Journal of Computational Chemistry 11: 700-733.
-
(1990)
Journal of Computational Chemistry
, vol.11
, pp. 700-733
-
-
Field, M.J.1
Bash, P.A.2
Karplus, M.3
-
49
-
-
84988053595
-
A Combined Abinitio Quantum-Mechanical and Molecular Mechanical Method for Carrying out Simulations on Complex Molecular-Systems - Applications to the Ch3cl+Cl- Exchange-Reaction and Gas-Phase Protonation of Polyethers
-
Singh UC, Kollman PA, (1986) A Combined Abinitio Quantum-Mechanical and Molecular Mechanical Method for Carrying out Simulations on Complex Molecular-Systems- Applications to the Ch3cl+Cl- Exchange-Reaction and Gas-Phase Protonation of Polyethers. Journal of Computational Chemistry 7: 718-730.
-
(1986)
Journal of Computational Chemistry
, vol.7
, pp. 718-730
-
-
Singh, U.C.1
Kollman, P.A.2
-
50
-
-
0034423977
-
Perspective on "Density functional thermochemistry. III. The role of exact exchange" - Becke AD (1993) J Chem Phys 98:5648-52
-
Raghavachari K, (2000) Perspective on "Density functional thermochemistry. III. The role of exact exchange"- Becke AD (1993) J Chem Phys 98:5648-52. Theoretical Chemistry Accounts 103: 361-363.
-
(2000)
Theoretical Chemistry Accounts
, vol.103
, pp. 361-363
-
-
Raghavachari, K.1
-
51
-
-
0345491105
-
Development of the Colle-Salvetti Correlation-Energy Formula into a Functional of the Electron-Density
-
Lee CT, Yang WT, Parr RG, (1988) Development of the Colle-Salvetti Correlation-Energy Formula into a Functional of the Electron-Density. Physical Review B 37: 785-789.
-
(1988)
Physical Review B
, vol.37
, pp. 785-789
-
-
Lee, C.T.1
Yang, W.T.2
Parr, R.G.3
-
52
-
-
0000216001
-
Accurate Spin-Dependent Electron Liquid Correlation Energies for Local Spin-Density Calculations - a Critical Analysis
-
Vosko SH, Wilk L, Nusair M, (1980) Accurate Spin-Dependent Electron Liquid Correlation Energies for Local Spin-Density Calculations- a Critical Analysis. Canadian Journal of Physics 58: 1200-1211.
-
(1980)
Canadian Journal of Physics
, vol.58
, pp. 1200-1211
-
-
Vosko, S.H.1
Wilk, L.2
Nusair, M.3
-
53
-
-
33751157732
-
Ab-Initio Calculation of Vibrational Absorption and Circular-Dichroism Spectra Using Density-Functional Force-Fields
-
Stephens PJ, Devlin FJ, Chabalowski CF, Frisch MJ, (1994) Ab-Initio Calculation of Vibrational Absorption and Circular-Dichroism Spectra Using Density-Functional Force-Fields. Journal of Physical Chemistry 98: 11623-11627.
-
(1994)
Journal of Physical Chemistry
, vol.98
, pp. 11623-11627
-
-
Stephens, P.J.1
Devlin, F.J.2
Chabalowski, C.F.3
Frisch, M.J.4
-
54
-
-
34548519907
-
A 30 angstrom long U-shaped catalytic tunnel in the crystal structure of polyamine oxidase
-
Binda C, Coda A, Angelini R, Federico R, Ascenzi P, et al. (1999) A 30 angstrom long U-shaped catalytic tunnel in the crystal structure of polyamine oxidase. Structure with Folding & Design 7: 265-276.
-
(1999)
Structure with Folding & Design
, vol.7
, pp. 265-276
-
-
Binda, C.1
Coda, A.2
Angelini, R.3
Federico, R.4
Ascenzi, P.5
-
56
-
-
0034161331
-
Flavoenzymes: diverse catalysts with recurrent features
-
Fraaije MW, Mattevi A, (2000) Flavoenzymes: diverse catalysts with recurrent features. Trends in Biochemical Sciences 25: 126-132.
-
(2000)
Trends in Biochemical Sciences
, vol.25
, pp. 126-132
-
-
Fraaije, M.W.1
Mattevi, A.2
-
57
-
-
28944433027
-
Lys300 plays a major role in the catalytic mechanism of maize polyamine oxidase
-
Polticelli F, Basran J, Faso C, Cona A, Minervini G, et al. (2005) Lys300 plays a major role in the catalytic mechanism of maize polyamine oxidase. Biochemistry 44: 16108-16120.
-
(2005)
Biochemistry
, vol.44
, pp. 16108-16120
-
-
Polticelli, F.1
Basran, J.2
Faso, C.3
Cona, A.4
Minervini, G.5
-
58
-
-
77953538248
-
A lysine conserved in the monoamine oxidase family is involved in oxidation of the reduced flavin in mouse polyamine oxidase
-
Pozzi MH, Fitzpatrick PF, (2010) A lysine conserved in the monoamine oxidase family is involved in oxidation of the reduced flavin in mouse polyamine oxidase. Archives of Biochemistry and Biophysics 498: 83-88.
-
(2010)
Archives of Biochemistry and Biophysics
, vol.498
, pp. 83-88
-
-
Pozzi, M.H.1
Fitzpatrick, P.F.2
-
59
-
-
61749094173
-
PH Dependence of a Mammalian Polyamine Oxidase: Insights into Substrate Specificity and the Role of Lysine 315
-
Pozzi MH, Gawandi V, Fitzpatrick PF, (2009) pH Dependence of a Mammalian Polyamine Oxidase: Insights into Substrate Specificity and the Role of Lysine 315. Biochemistry 48: 1508-1516.
-
(2009)
Biochemistry
, vol.48
, pp. 1508-1516
-
-
Pozzi, M.H.1
Gawandi, V.2
Fitzpatrick, P.F.3
-
60
-
-
33845925842
-
Mechanistic studies of the flavoenzyme tryptophan 2-monooxygenase: Deuterium and N-15 kinetic isotope effects on alanine oxidation by an L-amino acid oxidase
-
Ralph EC, Anderson MA, Cleland WW, Fitzpatrick PF, (2006) Mechanistic studies of the flavoenzyme tryptophan 2-monooxygenase: Deuterium and N-15 kinetic isotope effects on alanine oxidation by an L-amino acid oxidase. Biochemistry 45: 15844-15852.
-
(2006)
Biochemistry
, vol.45
, pp. 15844-15852
-
-
Ralph, E.C.1
Anderson, M.A.2
Cleland, W.W.3
Fitzpatrick, P.F.4
-
61
-
-
14344257032
-
PH and kinetic isotope effects on sarcosine oxidation by N-methyltryptophan oxidase
-
Ralph EC, Fitzpatrick PF, (2005) pH and kinetic isotope effects on sarcosine oxidation by N-methyltryptophan oxidase. Biochemistry 44: 3074-3081.
-
(2005)
Biochemistry
, vol.44
, pp. 3074-3081
-
-
Ralph, E.C.1
Fitzpatrick, P.F.2
-
62
-
-
47249152398
-
The pH dependence of kinetic isotope effects in monoamine oxidase A indicates stabilization of the neutral amine in the enzyme-substrate complex
-
Dunn RV, Marshall KR, Munro AW, Scrutton NS, (2008) The pH dependence of kinetic isotope effects in monoamine oxidase A indicates stabilization of the neutral amine in the enzyme-substrate complex. Febs Journal 275: 3850-3858.
-
(2008)
Febs Journal
, vol.275
, pp. 3850-3858
-
-
Dunn, R.V.1
Marshall, K.R.2
Munro, A.W.3
Scrutton, N.S.4
-
63
-
-
67049098986
-
Use of pH and kinetic isotope effects to establish chemistry as rate-limiting in oxidation of a peptide substrate by LSD1
-
Gaweska H, Henderson Pozzi M, Schmidt DM, McCafferty DG, Fitzpatrick PF, (2009) Use of pH and kinetic isotope effects to establish chemistry as rate-limiting in oxidation of a peptide substrate by LSD1. Biochemistry 48: 5440-5445.
-
(2009)
Biochemistry
, vol.48
, pp. 5440-5445
-
-
Gaweska, H.1
Henderson Pozzi, M.2
Schmidt, D.M.3
McCafferty, D.G.4
Fitzpatrick, P.F.5
-
64
-
-
33745862395
-
Crystal structure and mechanism of human lysine-specific demethylase-1. Nature Structural &
-
Stavropoulos P, Blobel G, Hoelz A, (2006) Crystal structure and mechanism of human lysine-specific demethylase-1. Nature Structural & Molecular Biology 13: 626-632.
-
(2006)
Molecular Biology
, vol.13
, pp. 626-632
-
-
Stavropoulos, P.1
Blobel, G.2
Hoelz, A.3
-
65
-
-
79551718687
-
Molecular Mimicry and Ligand Recognition in Binding and Catalysis by the Histone Demethylase LSD1-CoREST Complex
-
Baron R, Binda C, Tortorici M, McCammon JA, Mattevi A, (2011) Molecular Mimicry and Ligand Recognition in Binding and Catalysis by the Histone Demethylase LSD1-CoREST Complex. Structure 19: 212-220.
-
(2011)
Structure
, vol.19
, pp. 212-220
-
-
Baron, R.1
Binda, C.2
Tortorici, M.3
McCammon, J.A.4
Mattevi, A.5
-
66
-
-
0037025299
-
Structure-function relationships in flavoenzyme-dependent amine oxidations: a comparison of polyamine oxidase and monoamine oxidase
-
Binda C, Mattevi A, Edmondson DE, (2002) Structure-function relationships in flavoenzyme-dependent amine oxidations: a comparison of polyamine oxidase and monoamine oxidase. J Biol Chem 277: 23973-23976.
-
(2002)
J Biol Chem
, vol.277
, pp. 23973-23976
-
-
Binda, C.1
Mattevi, A.2
Edmondson, D.E.3
-
67
-
-
68749115479
-
New roles of flavoproteins in molecular cell biology: histone demethylase LSD1 and chromatin
-
Forneris F, Battaglioli E, Mattevi A, Binda C, (2009) New roles of flavoproteins in molecular cell biology: histone demethylase LSD1 and chromatin. FEBS J 276: 4304-4312.
-
(2009)
FEBS J
, vol.276
, pp. 4304-4312
-
-
Forneris, F.1
Battaglioli, E.2
Mattevi, A.3
Binda, C.4
-
68
-
-
0036140732
-
Structure of human monoamine oxidase B, a drug target for the treatment of neurological disorders
-
Binda C, Newton-Vinson P, Hubalek F, Edmondson DE, Mattevi A, (2002) Structure of human monoamine oxidase B, a drug target for the treatment of neurological disorders. Nat Struct Biol 9: 22-26.
-
(2002)
Nat Struct Biol
, vol.9
, pp. 22-26
-
-
Binda, C.1
Newton-Vinson, P.2
Hubalek, F.3
Edmondson, D.E.4
Mattevi, A.5
-
69
-
-
0021095474
-
Comparison of the three-dimensional protein and nucleotide structure of the FAD-binding domain of p-hydroxybenzoate hydroxylase with the FAD- as well as NADPH-binding domains of glutathione reductase
-
Wierenga RK, Drenth J, Schulz GE, (1983) Comparison of the three-dimensional protein and nucleotide structure of the FAD-binding domain of p-hydroxybenzoate hydroxylase with the FAD- as well as NADPH-binding domains of glutathione reductase. J Mol Biol 167: 725-739.
-
(1983)
J Mol Biol
, vol.167
, pp. 725-739
-
-
Wierenga, R.K.1
Drenth, J.2
Schulz, G.E.3
-
70
-
-
33748989795
-
Crystal structure of human histone lysine-specific demethylase 1 (LSD1)
-
Chen Y, Yang Y, Wang F, Wan K, Yamane K, et al. (2006) Crystal structure of human histone lysine-specific demethylase 1 (LSD1). Proc Natl Acad Sci U S A 103: 13956-13961.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 13956-13961
-
-
Chen, Y.1
Yang, Y.2
Wang, F.3
Wan, K.4
Yamane, K.5
-
71
-
-
34250852848
-
Insights into the mechanism of flavoprotein-catalyzed amine oxidation from nitrogen isotope effects on the reaction of N-methyltryptophan oxidase
-
Ralph EC, Hirschi JS, Anderson MA, Cleland WW, Singleton DA, et al. (2007) Insights into the mechanism of flavoprotein-catalyzed amine oxidation from nitrogen isotope effects on the reaction of N-methyltryptophan oxidase. Biochemistry 46: 7655-7664.
-
(2007)
Biochemistry
, vol.46
, pp. 7655-7664
-
-
Ralph, E.C.1
Hirschi, J.S.2
Anderson, M.A.3
Cleland, W.W.4
Singleton, D.A.5
-
72
-
-
33845925842
-
Mechanistic studies of the flavoenzyme tryptophan 2-monooxygenase: deuterium and 15N kinetic isotope effects on alanine oxidation by an L-amino acid oxidase
-
Ralph EC, Anderson MA, Cleland WW, Fitzpatrick PF, (2006) Mechanistic studies of the flavoenzyme tryptophan 2-monooxygenase: deuterium and 15N kinetic isotope effects on alanine oxidation by an L-amino acid oxidase. Biochemistry 45: 15844-15852.
-
(2006)
Biochemistry
, vol.45
, pp. 15844-15852
-
-
Ralph, E.C.1
Anderson, M.A.2
Cleland, W.W.3
Fitzpatrick, P.F.4
-
73
-
-
0346963173
-
Solvent and primary deuterium isotope effects show that lactate CH and OH bond cleavages are concerted in Y254F flavocytochrome b(2), consistent with a hydride transfer mechanism
-
Sobrado P, Fitzpatrick PF, (2003) Solvent and primary deuterium isotope effects show that lactate CH and OH bond cleavages are concerted in Y254F flavocytochrome b(2), consistent with a hydride transfer mechanism. Biochemistry 42: 15208-15214.
-
(2003)
Biochemistry
, vol.42
, pp. 15208-15214
-
-
Sobrado, P.1
Fitzpatrick, P.F.2
-
74
-
-
12344251747
-
On the catalytic role of the conserved active site residue His466 of choline oxidase
-
Ghanem M, Gadda G, (2005) On the catalytic role of the conserved active site residue His466 of choline oxidase. Biochemistry 44: 893-904.
-
(2005)
Biochemistry
, vol.44
, pp. 893-904
-
-
Ghanem, M.1
Gadda, G.2
-
75
-
-
27844574240
-
Determination of a large reorganization energy barrier for hydride abstraction by glucose oxidase
-
Brinkley DW, Roth JP, (2005) Determination of a large reorganization energy barrier for hydride abstraction by glucose oxidase. J Am Chem Soc 127: 15720-15721.
-
(2005)
J Am Chem Soc
, vol.127
, pp. 15720-15721
-
-
Brinkley, D.W.1
Roth, J.P.2
-
76
-
-
0028935332
-
Substituted Alcohols as Mechanistic Probes of Alcohol Oxidase
-
Menon V, Hsieh CT, Fitzpatrick PF, (1995) Substituted Alcohols as Mechanistic Probes of Alcohol Oxidase. Bioorganic Chemistry 23: 42-53.
-
(1995)
Bioorganic Chemistry
, vol.23
, pp. 42-53
-
-
Menon, V.1
Hsieh, C.T.2
Fitzpatrick, P.F.3
-
77
-
-
73149102982
-
Mechanistic Studies of para-Substituted N,N′-Dibenzyl-1,4-diaminobutanes as Substrates for a Mammalian Polyamine Oxidase
-
Pozzi MH, Gawandi V, Fitzpatrick PF, (2009) Mechanistic Studies of para-Substituted N,N′-Dibenzyl-1,4-diaminobutanes as Substrates for a Mammalian Polyamine Oxidase. Biochemistry 48: 12305-12313.
-
(2009)
Biochemistry
, vol.48
, pp. 12305-12313
-
-
Pozzi, M.H.1
Gawandi, V.2
Fitzpatrick, P.F.3
-
78
-
-
79952094721
-
Importance of a Serine Proximal to the C(4a) and N(5) Flavin Atoms for Hydride Transfer in Choline Oxidase
-
Yuan HL, Gadda G, (2011) Importance of a Serine Proximal to the C(4a) and N(5) Flavin Atoms for Hydride Transfer in Choline Oxidase. Biochemistry 50: 770-779.
-
(2011)
Biochemistry
, vol.50
, pp. 770-779
-
-
Yuan, H.L.1
Gadda, G.2
-
79
-
-
0037016014
-
First-principles molecular dynamics investigation of the D-amino acid oxidative half-reaction catalyzed by the flavoenzyme D-amino acid oxidase
-
Tilocca A, Gamba A, Vanoni MA, Fois E, (2002) First-principles molecular dynamics investigation of the D-amino acid oxidative half-reaction catalyzed by the flavoenzyme D-amino acid oxidase. Biochemistry 41: 14111-14121.
-
(2002)
Biochemistry
, vol.41
, pp. 14111-14121
-
-
Tilocca, A.1
Gamba, A.2
Vanoni, M.A.3
Fois, E.4
|