-
1
-
-
85024183810
-
-
Abeel T. 2006–2011. GenomeView
-
Abeel T. 2006–2011. GenomeView http://genomevieworg/(http://genomevieworg/)
-
-
-
-
2
-
-
0344719444
-
-
Adams KL, Palmer JD. 2003. Evolution of mitochondrial gene content: gene loss and transfer to the nucleus. Mol Phylogenet Evol. 29(3):380–395. doi nrg2220 [pii] 10.1038/nrg2220
-
Adams KL, Palmer JD. 2003. Evolution of mitochondrial gene content:gene loss and transfer to the nucleus. Mol Phylogenet Evol. 29(3):380–395. doi nrg2220 [pii] 10.1038/nrg2220 http://www.ncbi.nlm.nih.gov/pubmed/14615181 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18087260 (http://www.ncbi.nlm.nih.gov/pubmed/14615181 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18087260)
-
-
-
-
3
-
-
0037350957
-
-
Alexandersson M, Cawley S, Pachter L. 2003. SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model. Genome Res. 13(3):496–502
-
Alexandersson M, Cawley S, Pachter L. 2003. SLAM:cross-species gene finding and alignment with a generalized pair hidden Markov model. Genome Res. 13(3):496–502. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12618381 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12618381)
-
-
-
-
4
-
-
0346505461
-
-
Allen JE, Pertea M, Salzberg SL. 2004. Computational gene prediction using multiple sources of evidence. Genome Res. 14(1):142–148
-
Allen JE, Pertea M, Salzberg SL. 2004. Computational gene prediction using multiple sources of evidence. Genome Res. 14(1):142–148. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14707176 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14707176)
-
-
-
-
5
-
-
85142148152
-
-
Allen JE, Salzberg SL. 2005. JIGSAW: integration of multiple sources of evidence for gene prediction. Bioinformatics. 21(18):3596–3603
-
Allen JE, Salzberg SL. 2005. JIGSAW:integration of multiple sources of evidence for gene prediction. Bioinformatics. 21(18):3596–3603. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16076884 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16076884)
-
-
-
-
6
-
-
0025183708
-
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol. 215(3):403–410. doi 10.1006/jmbi.1990.9999
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol. 215(3):403–410. doi 10.1006/jmbi.1990.9999 http://www.ncbi.nlm.nih.gov/pubmed/2231712 (http://www.ncbi.nlm.nih.gov/pubmed/2231712)
-
-
-
-
7
-
-
0030801002
-
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25(17):3389–3402
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST:a new generation of protein database search programs. Nucleic Acids Res. 25(17):3389–3402. http://www.ncbi.nlm.nih.gov/pubmed/9254694 (http://www.ncbi.nlm.nih.gov/pubmed/9254694)
-
-
-
-
8
-
-
44249084514
-
-
Ansong C, Purvine SO, Adkins JN, Lipton MS, Smith RD. 2008. Proteogenomics: needs and roles to be filled by proteomics in genome annotation. Brief Func Genom Proteom. 7(1):50–62. doi 10.1093/bfgp/eln010
-
Ansong C, Purvine SO, Adkins JN, Lipton MS, Smith RD. 2008. Proteogenomics:needs and roles to be filled by proteomics in genome annotation. Brief Func Genom Proteom. 7(1):50–62. doi 10.1093/bfgp/eln010 http://www.ncbi.nlm.nih.gov/pubmed/18334489 (http://www.ncbi.nlm.nih.gov/pubmed/18334489)
-
-
-
-
9
-
-
13444304332
-
-
Ashurst JL, Chen CK, Gilbert JG, Jekosch K, Keenan S, Meidl P, Searle SM, Stalker J, Storey R, Trevanion S, et al. 2005. The Vertebrate Genome Annotation (Vega) database. Nucleic Acids Res. 33(Database issue):D459–465
-
Ashurst JL, Chen CK, Gilbert JG, Jekosch K, Keenan S, Meidl P, Searle SM, Stalker J, Storey R, Trevanion S, et al. 2005. The Vertebrate Genome Annotation (Vega) database. Nucleic Acids Res. 33(Database issue):D459–465. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15608237 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15608237)
-
-
-
-
10
-
-
0036673472
-
-
Bao Z, Eddy SR. 2002. Automated de novo identification of repeat sequence families in sequenced genomes. Genome Res. 12(8):1269–1276
-
Bao Z, Eddy SR. 2002. Automated de novo identification of repeat sequence families in sequenced genomes. Genome Res. 12(8):1269–1276. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12176934 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12176934)
-
-
-
-
11
-
-
0033861549
-
-
Batzoglou S, Pachter L, Mesirov JP, Berger B, Lander ES. 2000. Human and mouse gene structure: comparative analysis and application to exon prediction. Genome Res. 10(7):950–958
-
Batzoglou S, Pachter L, Mesirov JP, Berger B, Lander ES. 2000. Human and mouse gene structure:comparative analysis and application to exon prediction. Genome Res. 10(7):950–958. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10899144 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10899144)
-
-
-
-
12
-
-
13444304389
-
-
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. 2005. GenBank. Nucleic Acids Res. 33(Database issue):D34–38
-
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. 2005. GenBank. Nucleic Acids Res. 33(Database issue):D34–38. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15608212 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15608212)
-
-
-
-
13
-
-
0033555906
-
-
Benson G. 1999. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27(2):573–580. doi gkc131 [pii]
-
Benson G. 1999. Tandem repeats finder:a program to analyze DNA sequences. Nucleic Acids Res. 27(2):573–580. doi gkc131 [pii] http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9862982 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9862982)
-
-
-
-
14
-
-
2442713832
-
-
Birney E, Clamp M, Durbin R. 2004a. GeneWise and Genomewise. Genome Res. 14(5):988–995
-
Birney E, Clamp M, Durbin R. 2004a. GeneWise and Genomewise. Genome Res. 14(5):988–995. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15123596 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15123596)
-
-
-
-
15
-
-
2442706422
-
-
Birney E, Andrews TD, Bevan P, Caccamo M, Chen Y, Clarke L, Coates G, Cuff J, Curwen V, Cutts T, et al. 2004b. An overview of Ensembl. Genome Res. 14(5):925–928
-
Birney E, Andrews TD, Bevan P, Caccamo M, Chen Y, Clarke L, Coates G, Cuff J, Curwen V, Cutts T, et al. 2004b. An overview of Ensembl. Genome Res. 14(5):925–928. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15078858 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15078858)
-
-
-
-
16
-
-
79955372691
-
-
Bitton DA, Wood V, Scutt PJ, Grallert A, Yates T, Smith DL, Hagan IM, Miller CJ. 2011. Augmented Annotation of the Schizosaccharomyces pombe Genome Reveals Additional Genes Required for Growth and Viability. Genetics. doi genetics.110.123497 [pii]10.1534/genetics.110.123497
-
Bitton DA, Wood V, Scutt PJ, Grallert A, Yates T, Smith DL, Hagan IM, Miller CJ. 2011. Augmented Annotation of the Schizosaccharomyces pombe Genome Reveals Additional Genes Required for Growth and Viability. Genetics. doi genetics.110.123497 [pii]10.1534/genetics.110.123497 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=21270388 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=21270388)
-
-
-
-
17
-
-
29144445262
-
-
Brejova B, Brown DG, Li M, Vinar T. 2005. ExonHunter: a comprehensive approach to gene finding. Bioinformatics 21 Suppl 1:i57–65
-
Brejova B, Brown DG, Li M, Vinar T. 2005. ExonHunter:a comprehensive approach to gene finding. Bioinformatics 21 Suppl 1:i57–65. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15961499 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15961499)
-
-
-
-
18
-
-
65549135825
-
-
Brejova B, Vinar T, Chen Y, Wang S, Zhao G, Brown DG, Li M, Zhou Y. 2009. Finding genes in Schistosoma japonicum: annotating novel genomes with help of extrinsic evidence. Nucleic Acids Res. 37(7):e52. doi gkp052 [pii]10.1093/nar/gkp052
-
Brejova B, Vinar T, Chen Y, Wang S, Zhao G, Brown DG, Li M, Zhou Y. 2009. Finding genes in Schistosoma japonicum:annotating novel genomes with help of extrinsic evidence. Nucleic Acids Res. 37(7):e52. doi gkp052 [pii]10.1093/nar/gkp052 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19264800 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19264800)
-
-
-
-
19
-
-
37249005195
-
Steady progress and recent breakthroughs in the accuracy of automated genome annotation
-
Available from
-
Brent, MR., 2008. Steady progress and recent breakthroughs in the accuracy of automated genome annotation. Nat Rev Genet., 9 (1):62–73. Available from
-
(2008)
Nat Rev Genet
, vol.9
, Issue.1
, pp. 62-73
-
-
Brent, M.R.1
-
20
-
-
2942521197
-
-
Brent MR, Guigo R. 2004. Recent advances in gene structure prediction. Curr Opin Struct Biol. 14(3):264–272
-
Brent MR, Guigo R. 2004. Recent advances in gene structure prediction. Curr Opin Struct Biol. 14(3):264–272. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15193305 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15193305)
-
-
-
-
21
-
-
0031586003
-
-
Burge C, Karlin S. 1997. Prediction of complete gene structures in human genomic DNA. J Mol Biol. 268(1):78–94
-
Burge C, Karlin S. 1997. Prediction of complete gene structures in human genomic DNA. J Mol Biol. 268(1):78–94. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9149143 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9149143)
-
-
-
-
22
-
-
66649105285
-
-
Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, Rheinbay E, Grabherr M, Forche A, Reedy JL, et al. 2009. Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature 459(7247):657–662. Available from doi nature08064 [pii] 10.1038/nature08064
-
Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, Rheinbay E, Grabherr M, Forche A, Reedy JL, et al. 2009. Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature 459(7247):657–662. Available from doi nature08064 [pii] 10.1038/nature08064 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19465905 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19465905)
-
-
-
-
23
-
-
33846573830
-
-
Campbell MA, Haas BJ, Hamilton JP, Mount SM, Buell CR. 2006. Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis. BMC Genomics 7:327
-
Campbell MA, Haas BJ, Hamilton JP, Mount SM, Buell CR. 2006. Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis. BMC Genomics 7:327. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17194304 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17194304)
-
-
-
-
24
-
-
38049057159
-
-
Cantarel BL, Korf I, Robb SM, Parra G, Ross E, Moore B, Holt C, Sanchez Alvarado A, Yandell M. 2008. MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. Genome Res. 18(1):188–196. doi gr.6743907 [pii]10.1101/gr.6743907
-
Cantarel BL, Korf I, Robb SM, Parra G, Ross E, Moore B, Holt C, Sanchez Alvarado A, Yandell M. 2008. MAKER:an easy-to-use annotation pipeline designed for emerging model organism genomes. Genome Res. 18(1):188–196. doi gr.6743907 [pii]10.1101/gr.6743907 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18025269 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18025269)
-
-
-
-
25
-
-
58149200943
-
-
Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B. 2009. The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res. 37(Database issue):D233–238. doi gkn663 [pii]10.1093/nar/gkn663
-
Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B. 2009. The Carbohydrate-Active EnZymes database (CAZy):an expert resource for Glycogenomics. Nucleic Acids Res. 37(Database issue):D233–238. doi gkn663 [pii]10.1093/nar/gkn663 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18838391 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18838391)
-
-
-
-
26
-
-
34447557855
-
-
Cardoso MA, Tambor JH, Nobrega FG. 2007. The mitochondrial genome from the thermal dimorphic fungus Paracoccidioides brasiliensis. Yeast. 24(7):607–616. doi 10.1002/yea.1500
-
Cardoso MA, Tambor JH, Nobrega FG. 2007. The mitochondrial genome from the thermal dimorphic fungus Paracoccidioides brasiliensis. Yeast. 24(7):607–616. doi 10.1002/yea.1500 http://www.ncbi.nlm.nih.gov/pubmed/17492801 (http://www.ncbi.nlm.nih.gov/pubmed/17492801)
-
-
-
-
27
-
-
9144256665
-
-
Christie KR, Weng S, Balakrishnan R, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Feierbach B, Fisk DG, Hirschman JE, et al. 2004. Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Res. 32(Database issue):D311–314
-
Christie KR, Weng S, Balakrishnan R, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Feierbach B, Fisk DG, Hirschman JE, et al. 2004. Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Res. 32(Database issue):D311–314. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14681421 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14681421)
-
-
-
-
28
-
-
67651065004
-
-
Coleman JJ, Mylonakis E. 2009. Efflux in fungi: la piece de resistance. PLoS Pathog. 5(6):e1000486. doi 10.1371/journal.ppat.1000486
-
Coleman JJ, Mylonakis E. 2009. Efflux in fungi:la piece de resistance. PLoS Pathog. 5(6):e1000486. doi 10.1371/journal.ppat.1000486 http://www.ncbi.nlm.nih.gov/entrez/query.cmd=fcgi?Retrieve&db=PubMed&dopt=Citation&list_uids=19557154 (http://www.ncbi.nlm.nih.gov/entrez/query.cmd=fcgi?Retrieve&db=PubMed&dopt=Citation&list_uids=19557154)
-
-
-
-
29
-
-
24644503098
-
-
Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M. 2005. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21(18):3674–3676. doi 10.1093/bioinformatics/bti610
-
Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M. 2005. Blast2GO:a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21(18):3674–3676. doi 10.1093/bioinformatics/bti610 http://www.ncbi.nlm.nih.gov/pubmed/16081474 (http://www.ncbi.nlm.nih.gov/pubmed/16081474)
-
-
-
-
30
-
-
33745916120
-
-
Costanzo MC, Arnaud MB, Skrzypek MS, Binkley G, Lane C, Miyasato SR, Sherlock G. 2006. The Candida Genome Database: facilitating research on Candida albicans molecular biology. FEMS Yeast Res. 6(5):671–684. doi 10.1111/j.1567-1364.2006.00074.x
-
Costanzo MC, Arnaud MB, Skrzypek MS, Binkley G, Lane C, Miyasato SR, Sherlock G. 2006. The Candida Genome Database:facilitating research on Candida albicans molecular biology. FEMS Yeast Res. 6(5):671–684. doi 10.1111/j.1567-1364.2006.00074.x http://www.ncbi.nlm.nih.gov/pubmed/16879419 (http://www.ncbi.nlm.nih.gov/pubmed/16879419)
-
-
-
-
31
-
-
0025358097
-
-
Cummings DJ, McNally KL, Domenico JM, Matsuura ET. 1990. The complete DNA sequence of the mitochondrial genome of Podospora anserina. Curr Genet. 17(5):375–402
-
Cummings DJ, McNally KL, Domenico JM, Matsuura ET. 1990. The complete DNA sequence of the mitochondrial genome of Podospora anserina. Curr Genet. 17(5):375–402. http://www.ncbi.nlm.nih.gov/pubmed/2357736 (http://www.ncbi.nlm.nih.gov/pubmed/2357736)
-
-
-
-
32
-
-
77956016484
-
-
Cuomo CA, Birren BW. 2010. The fungal genome initiative and lessons learned from genome sequencing. Methods Enzymol. 470:833–855. doi 10.1016/S0076-6879(10)70034-3
-
Cuomo CA, Birren BW. 2010. The fungal genome initiative and lessons learned from genome sequencing. Methods Enzymol. 470:833–855. doi 10.1016/S0076-6879(10)70034-3 http://www.ncbi.nlm.nih.gov/pubmed/20946837 (http://www.ncbi.nlm.nih.gov/pubmed/20946837)
-
-
-
-
33
-
-
34548390530
-
-
DeCaprio D, Vinson JP, Pearson MD, Montgomery P, Doherty M, Galagan JE. 2007. Conrad: gene prediction using conditional random fields. Genome Res. 17(9):1389–1398. doi 10.1101/gr.6558107
-
DeCaprio D, Vinson JP, Pearson MD, Montgomery P, Doherty M, Galagan JE. 2007. Conrad:gene prediction using conditional random fields. Genome Res. 17(9):1389–1398. doi 10.1101/gr.6558107 http://www.ncbi.nlm.nih.gov/pubmed/17690204 (http://www.ncbi.nlm.nih.gov/pubmed/17690204)
-
-
-
-
34
-
-
0036606576
-
-
Delcher AL, Phillippy A, Carlton J, Salzberg SL. 2002. Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Res. 30(11):2478–2483
-
Delcher AL, Phillippy A, Carlton J, Salzberg SL. 2002. Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Res. 30(11):2478–2483. http://www.ncbi.nlm.nih.gov/pubmed/12034836 (http://www.ncbi.nlm.nih.gov/pubmed/12034836)
-
-
-
-
35
-
-
33745775924
-
-
Do JH, Choi DK. 2006. Computational approaches to gene prediction. J Microbiol. 44(2):137–144
-
Do JH, Choi DK. 2006. Computational approaches to gene prediction. J Microbiol. 44(2):137–144. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16728949 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16728949)
-
-
-
-
36
-
-
79955098374
-
-
D’Souza CA, Kronstad JW, Taylor G, Warren R, Yuen M, Hu G, Jung WH, Sham A, Kidd SE, Tangen K, et al. 2011. Genome Variation in Cryptococcus gattii, an Emerging Pathogen of Immunocompetent Hosts. MBio. 2(1). doi mBio.00342-10 [pii] 10.1128/mBio. 00342-10
-
D’Souza CA, Kronstad JW, Taylor G, Warren R, Yuen M, Hu G, Jung WH, Sham A, Kidd SE, Tangen K, et al. 2011. Genome Variation in Cryptococcus gattii, an Emerging Pathogen of Immunocompetent Hosts. MBio. 2(1). doi mBio.00342-10 [pii] 10.1128/mBio. 00342-10 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=21304167 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=21304167)
-
-
-
-
37
-
-
0035656688
-
-
Eddy SR. 2001. Non-coding RNA genes and the modern RNA world. Nat Rev Genet. 2(12):919–929
-
Eddy SR. 2001. Non-coding RNA genes and the modern RNA world. Nat Rev Genet. 2(12):919–929. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11733745 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11733745)
-
-
-
-
38
-
-
0037133945
-
-
Eddy SR. 2002a. Computational genomics of noncoding RNA genes. Cell. 109(2):137–140
-
Eddy SR. 2002a. Computational genomics of noncoding RNA genes. Cell. 109(2):137–140. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12007398 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12007398)
-
-
-
-
39
-
-
2942607685
-
-
Eddy SR. 2002b. A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure. BMC Bioinformatics 3:18
-
Eddy SR. 2002b. A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure. BMC Bioinformatics 3:18. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12095421 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12095421)
-
-
-
-
40
-
-
0028272315
-
-
Eddy SR, Durbin R. 1994. RNA sequence analysis using covariance models. Nucleic Acids Res. 22(11):2079–2088
-
Eddy SR, Durbin R. 1994. RNA sequence analysis using covariance models. Nucleic Acids Res. 22(11):2079–2088. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8029015 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8029015)
-
-
-
-
41
-
-
84860513986
-
-
Edgar RC, Myers EW. 2005. PILER: identification and classification of genomic repeats. Bioinformatics 21 Suppl 1:i152–158
-
Edgar RC, Myers EW. 2005. PILER:identification and classification of genomic repeats. Bioinformatics 21 Suppl 1:i152–158. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15961452 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15961452)
-
-
-
-
42
-
-
34248531753
-
-
Emanuelsson O, Brunak S, von Heijne G, Nielsen H. 2007. Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc. 2(4):953–971. doi 10.1038/nprot.2007.131
-
Emanuelsson O, Brunak S, von Heijne G, Nielsen H. 2007. Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc. 2(4):953–971. doi 10.1038/nprot.2007.131 http://www.ncbi.nlm.nih.gov/pubmed/17446895 (http://www.ncbi.nlm.nih.gov/pubmed/17446895)
-
-
-
-
43
-
-
85024218340
-
-
Engels R. 2003–2011. ARGO Genome Browser
-
Engels R. 2003–2011. ARGO Genome Browser http://wwwbroadinstituteorg/annotation/argo/(http://wwwbroadinstituteorg/annotation/argo/)
-
-
-
-
44
-
-
2442700175
-
-
Eyras E, Caccamo M, Curwen V, Clamp M. 2004. ESTGenes: alternative splicing from ESTs in Ensembl. Genome Res. 14(5):976–987
-
Eyras E, Caccamo M, Curwen V, Clamp M. 2004. ESTGenes:alternative splicing from ESTs in Ensembl. Genome Res. 14(5):976–987. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15123595 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15123595)
-
-
-
-
45
-
-
75549090603
-
-
Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, et al. 2010. The Pfam protein families database. Nucleic Acids Res. 38(Database issue):D211–222. doi 10.1093/nar/gkp985
-
Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, et al. 2010. The Pfam protein families database. Nucleic Acids Res. 38(Database issue):D211–222. doi 10.1093/nar/gkp985 http://www.ncbi.nlm.nih.gov/pubmed/19920124 (http://www.ncbi.nlm.nih.gov/pubmed/19920124)
-
-
-
-
46
-
-
0031732094
-
-
Florea L, Hartzell G, Zhang Z, Rubin GM, Miller W. 1998. A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res. 8(9):967–974
-
Florea L, Hartzell G, Zhang Z, Rubin GM, Miller W. 1998. A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res. 8(9):967–974. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9750195 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9750195)
-
-
-
-
47
-
-
19944433052
-
-
Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M, Walenz B, Mobarry C, Merkulov GV, Charlab R, et al. 2005. Gene and alternative splicing annotation with AIR. Genome Res. 15(1):54–66
-
Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M, Walenz B, Mobarry C, Merkulov GV, Charlab R, et al. 2005. Gene and alternative splicing annotation with AIR. Genome Res. 15(1):54–66. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15632090 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15632090)
-
-
-
-
48
-
-
85024221263
-
-
Plant & Animal Genome (PAG) XVIII Conference, January
-
Flutre, T, Inizan, O, Hoede, C, and Quesneville, H., REPET:pipelines for the identification and annotation of transposable elements in genomic sequences. Plant & Animal Genome (PAG) XVIII Conference. January9–132010.
-
REPET: pipelines for the identification and annotation of transposable elements in genomic sequences
-
-
Flutre, T.1
Inizan, O.2
Hoede, C.3
Quesneville, H.4
-
49
-
-
0036184369
-
-
Forget L, Ustinova J, Wang Z, Huss VA, Lang BF. 2002. Hyaloraphidium curvatum: a linear mitochondrial genome, tRNA editing, and an evolutionary link to lower fungi. Mol Biol Evol. 19(3):310–319
-
Forget L, Ustinova J, Wang Z, Huss VA, Lang BF. 2002. Hyaloraphidium curvatum:a linear mitochondrial genome, tRNA editing, and an evolutionary link to lower fungi. Mol Biol Evol. 19(3):310–319. http://www.ncbi.nlm.nih.gov/pubmed/11861890 (http://www.ncbi.nlm.nih.gov/pubmed/11861890)
-
-
-
-
50
-
-
49749105312
-
-
Formighieri EF, Tiburcio RA, Armas ED, Medrano FJ, Shimo H, Carels N, Goes-Neto A, Cotomacci C, Carazzolle MF, Sardinha-Pinto N, et al. 2008. The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109 kb in size and contains a stable integrated plasmid. Mycol Res. 112(Pt 10):1136–1152. doi 10.1016/j.mycres.2008.04.014
-
Formighieri EF, Tiburcio RA, Armas ED, Medrano FJ, Shimo H, Carels N, Goes-Neto A, Cotomacci C, Carazzolle MF, Sardinha-Pinto N, et al. 2008. The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109 kb in size and contains a stable integrated plasmid. Mycol Res. 112(Pt 10):1136–1152. doi 10.1016/j.mycres.2008.04.014 http://www.ncbi.nlm.nih.gov/pubmed/18786820 (http://www.ncbi.nlm.nih.gov/pubmed/18786820)
-
-
-
-
51
-
-
10244239321
-
-
Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, Feldmann H, Galibert F, Hoheisel JD, Jacq C, Johnston M, et al. 1996. Life with 6000 genes. Science. 274(5287):546, 563–547
-
Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, Feldmann H, Galibert F, Hoheisel JD, Jacq C, Johnston M, et al. 1996. Life with 6000 genes. Science. 274(5287):546, 563–547. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8849441 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8849441)
-
-
-
-
52
-
-
77952236323
-
-
Grewal SI. 2010. RNAi-dependent formation of heterochromatin and its diverse functions. Curr Opin Genet Dev. 20(2):134–141. doi S0959-437X(10)00028-6 [pii]10.1016/j.gde.2010.02.003
-
Grewal SI. 2010. RNAi-dependent formation of heterochromatin and its diverse functions. Curr Opin Genet Dev. 20(2):134–141. doi S0959-437X(10)00028-6 [pii]10.1016/j.gde.2010.02.003 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20207534 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20207534)
-
-
-
-
53
-
-
0037252684
-
-
Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR. 2003. Rfam: an RNA family database. Nucleic Acids Res. 31(1):439–441
-
Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR. 2003. Rfam:an RNA family database. Nucleic Acids Res. 31(1):439–441. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12520045 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12520045)
-
-
-
-
54
-
-
13444252847
-
-
Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, Bateman A. 2005. Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Res. 33(Database issue):D121–124
-
Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, Bateman A. 2005. Rfam:annotating non-coding RNAs in complete genomes. Nucleic Acids Res. 33(Database issue):D121–124. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15608160 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15608160)
-
-
-
-
55
-
-
33645979674
-
-
Gross SS, Brent MR. 2006. Using multiple alignments to improve gene prediction. J Comput Biol. 13(2):379–393
-
Gross SS, Brent MR. 2006. Using multiple alignments to improve gene prediction. J Comput Biol. 13(2):379–393. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16597247 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16597247)
-
-
-
-
56
-
-
40449115745
-
-
Gross SS, Do CB, Sirota M, Batzoglou S. 2007. CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction. Genome Biol. 8(12):R269. doi 10.1186/gb-2007-8-12-r269
-
Gross SS, Do CB, Sirota M, Batzoglou S. 2007. CONTRAST:a discriminative, phylogeny-free approach to multiple informant de novo gene prediction. Genome Biol. 8(12):R269. doi 10.1186/gb-2007-8-12-r269 http://www.ncbi.nlm.nih.gov/pubmed/18096039 (http://www.ncbi.nlm.nih.gov/pubmed/18096039)
-
-
-
-
57
-
-
0032456609
-
-
Guigo R. 1998. Assembling genes from predicted exons in linear time with dynamic programming. J Comput Biol. 5(4):681–702
-
Guigo R. 1998. Assembling genes from predicted exons in linear time with dynamic programming. J Comput Biol. 5(4):681–702. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10072084 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10072084)
-
-
-
-
58
-
-
33748641351
-
-
Guigo R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, et al. 2006. EGASP: the human ENCODE Genome Annotation Assessment Project. Genome Biol. 7 Suppl 1:S2 1–31
-
Guigo R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, et al. 2006. EGASP:the human ENCODE Genome Annotation Assessment Project. Genome Biol. 7 Suppl 1:S2 1–31. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16925836 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16925836)
-
-
-
-
59
-
-
77952231080
-
-
Haas BJ, Zody MC. 2010. Advancing RNA-Seq analysis. Nat Biotechnol. 28(5):421–423. doi 10.1038/nbt0510-421
-
Haas BJ, Zody MC. 2010. Advancing RNA-Seq analysis. Nat Biotechnol. 28(5):421–423. doi 10.1038/nbt0510-421 http://www.ncbi.nlm.nih.gov/pubmed/20458303 (http://www.ncbi.nlm.nih.gov/pubmed/20458303)
-
-
-
-
60
-
-
17344374428
-
-
Haas BJ, Volfovsky N, Town CD, Troukhan M, Alexandrov N, Feldmann KA, Flavell RB, White O, Salzberg SL. 2002. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol. 3(6): RESEARCH0029
-
Haas BJ, Volfovsky N, Town CD, Troukhan M, Alexandrov N, Feldmann KA, Flavell RB, White O, Salzberg SL. 2002. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol. 3(6):RESEARCH0029. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12093376 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12093376)
-
-
-
-
61
-
-
0141905891
-
-
Haas BJ, Delcher AL, Mount SM, Wortman JR, Smith RK, Jr., Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD, et al. 2003. Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies. Nucleic Acids Res. 31(19):5654–5666
-
Haas BJ, Delcher AL, Mount SM, Wortman JR, Smith RK, Jr., Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD, et al. 2003. Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies. Nucleic Acids Res. 31(19):5654–5666. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14500829 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14500829)
-
-
-
-
62
-
-
27544456832
-
-
Haas BJ, Wortman JR, Ronning CM, Hannick LI, Smith RK, Jr., Maiti R, Chan AP, Yu C, Farzad M, Wu D, et al. 2005. Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release. BMC Biol. 3:7
-
Haas BJ, Wortman JR, Ronning CM, Hannick LI, Smith RK, Jr., Maiti R, Chan AP, Yu C, Farzad M, Wu D, et al. 2005. Complete reannotation of the Arabidopsis genome:methods, tools, protocols and the final release. BMC Biol. 3:7. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15784138 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15784138)
-
-
-
-
63
-
-
42949086676
-
-
Haas BJ, Salzberg SL, Zhu W, Pertea M, Allen JE, Orvis J, White O, Buell CR, Wortman JR. 2008. Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments. Genome Biol. 9(1):R7. doi gb-2008-9-1-r7 [pii] 10. 1186/gb-2008-9-1-r7
-
Haas BJ, Salzberg SL, Zhu W, Pertea M, Allen JE, Orvis J, White O, Buell CR, Wortman JR. 2008. Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments. Genome Biol. 9(1):R7. doi gb-2008-9-1-r7 [pii] 10. 1186/gb-2008-9-1-r7 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18190707 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18190707)
-
-
-
-
64
-
-
0037249633
-
-
Haft DH, Selengut JD, White O. 2003. The TIGRFAMs database of protein families. Nucleic Acids Res. 31(1):371–373
-
Haft DH, Selengut JD, White O. 2003. The TIGRFAMs database of protein families. Nucleic Acids Res. 31(1):371–373. http://www.ncbi.nlm.nih.gov/pubmed/12520025 (http://www.ncbi.nlm.nih.gov/pubmed/12520025)
-
-
-
-
65
-
-
37848998569
-
-
Hane JK, Lowe RG, Solomon PS, Tan KC, Schoch CL, Spatafora JW, Crous PW, Kodira C, Birren BW, Galagan JE, et al. 2007. Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum. Plant Cell 19(11):3347–3368. doi 10.1105/tpc.107.052829
-
Hane JK, Lowe RG, Solomon PS, Tan KC, Schoch CL, Spatafora JW, Crous PW, Kodira C, Birren BW, Galagan JE, et al. 2007. Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum. Plant Cell 19(11):3347–3368. doi 10.1105/tpc.107.052829 http://www.ncbi.nlm.nih.gov/pubmed/18024570 (http://www.ncbi.nlm.nih.gov/pubmed/18024570)
-
-
-
-
66
-
-
3042767202
-
-
He L, Hannon GJ. 2004. MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet. 5(7):522–531
-
He L, Hannon GJ. 2004. MicroRNAs:small RNAs with a big role in gene regulation. Nat Rev Genet. 5(7):522–531. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15211354 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15211354)
-
-
-
-
67
-
-
0036708637
-
-
Howe KL, Chothia T, Durbin R. 2002. GAZE: a generic framework for the integration of gene-prediction data by dynamic programming. Genome Res. 12(9):1418–1427
-
Howe KL, Chothia T, Durbin R. 2002. GAZE:a generic framework for the integration of gene-prediction data by dynamic programming. Genome Res. 12(9):1418–1427. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12213779 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12213779)
-
-
-
-
68
-
-
0031573382
-
-
Huang X, Adams MD, Zhou H, Kerlavage AR. 1997. A tool for analyzing and annotating genomic sequences. Genomics 46(1):37–45
-
Huang X, Adams MD, Zhou H, Kerlavage AR. 1997. A tool for analyzing and annotating genomic sequences. Genomics 46(1):37–45. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9403056 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9403056)
-
-
-
-
69
-
-
77952299957
-
-
Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ. 2010. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11:119. doi 1471-2105-11-119 [pii] 10.1186/1471-2105-11-119
-
Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ. 2010. Prodigal:prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11:119. doi 1471-2105-11-119 [pii] 10.1186/1471-2105-11-119 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20211023 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20211023)
-
-
-
-
70
-
-
65349146415
-
-
Ivashchenko AT, Tauasarova MK, Atambaeva Sh A. 2009. [Exon-intron structure of genes of fungi genomes]. Mol Biol (Mosk). 43(1):28–35
-
Ivashchenko AT, Tauasarova MK, Atambaeva Sh A. 2009. [Exon-intron structure of genes of fungi genomes]. Mol Biol (Mosk). 43(1):28–35. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19334523 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19334523)
-
-
-
-
71
-
-
0034284437
-
-
Jurka J. 2000. Repbase update: a database and an electronic journal of repetitive elements. Trends Genet. 16(9):418–420
-
Jurka J. 2000. Repbase update:a database and an electronic journal of repetitive elements. Trends Genet. 16(9):418–420. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10973072 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10973072)
-
-
-
-
72
-
-
23844525077
-
-
Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J. 2005. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res. 110(1–4):462–467
-
Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J. 2005. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res. 110(1–4):462–467. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16093699 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16093699)
-
-
-
-
73
-
-
40349086064
-
-
Juhasz A, Pfeiffer I, Keszthelyi A, Kucsera J, Vagvolgyi C, Hamari Z. 2008. Comparative analysis of the complete mitochondrial genomes of Aspergillus niger mtDNA type 1a and Aspergillus tubingensis mtDNA type 2b. FEMS Microbiol Lett. 281(1):51–57. doi 10.1111/j.1574-6968.2008.01077.x
-
Juhasz A, Pfeiffer I, Keszthelyi A, Kucsera J, Vagvolgyi C, Hamari Z. 2008. Comparative analysis of the complete mitochondrial genomes of Aspergillus niger mtDNA type 1a and Aspergillus tubingensis mtDNA type 2b. FEMS Microbiol Lett. 281(1):51–57. doi 10.1111/j.1574-6968.2008.01077.x http://www.ncbi.nlm.nih.gov/pubmed/18318841 (http://www.ncbi.nlm.nih.gov/pubmed/18318841)
-
-
-
-
74
-
-
13444292428
-
-
Kanz C, Aldebert P, Althorpe N, Baker W, Baldwin A, Bates K, Browne P, van den Broek A, Castro M, Cochrane G, et al. 2005. The EMBL Nucleotide Sequence Database. Nucleic Acids Res. 33(Database issue):D29–33
-
Kanz C, Aldebert P, Althorpe N, Baker W, Baldwin A, Bates K, Browne P, van den Broek A, Castro M, Cochrane G, et al. 2005. The EMBL Nucleotide Sequence Database. Nucleic Acids Res. 33(Database issue):D29–33. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15608199 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15608199)
-
-
-
-
75
-
-
0035936144
-
-
Katinka MD, Duprat S, Cornillot E, Metenier G, Thomarat F, Prensier G, Barbe V, Peyretaillade E, Brottier P, Wincker P, et al. 2001. Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Nature 414(6862):450–453
-
Katinka MD, Duprat S, Cornillot E, Metenier G, Thomarat F, Prensier G, Barbe V, Peyretaillade E, Brottier P, Wincker P, et al. 2001. Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Nature 414(6862):450–453. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11719806 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11719806)
-
-
-
-
76
-
-
1542513556
-
-
Kazazian HH, Jr. 2004. Mobile elements: drivers of genome evolution. Science 303(5664):1626–1632
-
Kazazian HH, Jr. 2004. Mobile elements:drivers of genome evolution. Science 303(5664):1626–1632. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15016989 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15016989)
-
-
-
-
77
-
-
0038349948
-
-
Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES. 2003. Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241–254. doi 10.1038/nature01644nature01644 [pii]
-
Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES. 2003. Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423(6937):241–254. doi 10.1038/nature01644nature01644 [pii] http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12748633 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12748633)
-
-
-
-
78
-
-
85193629234
-
-
Kent WJ. 2002. BLAT–the BLAST-like alignment tool. Genome Res. 12(4):656–664
-
Kent WJ. 2002. BLAT–the BLAST-like alignment tool. Genome Res. 12(4):656–664. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11932250 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11932250)
-
-
-
-
79
-
-
77951120000
-
-
Keren H, Lev-Maor G, Ast G. 2010. Alternative splicing and evolution: diversification, exon definition and function. Nat Rev Genet. 11(5):345–355. doi 10.1038/nrg2776
-
Keren H, Lev-Maor G, Ast G. 2010. Alternative splicing and evolution:diversification, exon definition and function. Nat Rev Genet. 11(5):345–355. doi 10.1038/nrg2776 http://www.ncbi.nlm.nih.gov/pubmed/20376054 (http://www.ncbi.nlm.nih.gov/pubmed/20376054)
-
-
-
-
80
-
-
77955274600
-
-
Khaldi N, Seifuddin FT, Turner G, Haft D, Nierman WC, Wolfe KH, Fedorova ND. 2010. SMURF: Genomic mapping of fungal secondary metabolite clusters. Fungal Genet Biol. 47(9):736–741. doi S1087- 1845(10)00105-2 [pii]10.1016/j.fgb.2010.06.003
-
Khaldi N, Seifuddin FT, Turner G, Haft D, Nierman WC, Wolfe KH, Fedorova ND. 2010. SMURF:Genomic mapping of fungal secondary metabolite clusters. Fungal Genet Biol. 47(9):736–741. doi S1087- 1845(10)00105-2 [pii]10.1016/j.fgb.2010.06.003 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20554054 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20554054)
-
-
-
-
81
-
-
2942544417
-
-
Korf I. 2004. Gene finding in novel genomes. BMC Bioinformatics 5:59
-
Korf I. 2004. Gene finding in novel genomes. BMC Bioinformatics 5:59. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15144565 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15144565)
-
-
-
-
82
-
-
17444437765
-
-
Korf I, Flicek P, Duan D, Brent MR. 2001. Integrating genomic homology into gene structure prediction. Bioinformatics 17 Suppl 1:S140–148
-
Korf I, Flicek P, Duan D, Brent MR. 2001. Integrating genomic homology into gene structure prediction. Bioinformatics 17 Suppl 1:S140–148. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11473003 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11473003)
-
-
-
-
83
-
-
0035910270
-
-
Krogh A, Larsson B, von Heijne G, Sonnhammer EL. 2001. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol. 305(3):567–580. doi 10.1006/jmbi.2000.4315
-
Krogh A, Larsson B, von Heijne G, Sonnhammer EL. 2001. Predicting transmembrane protein topology with a hidden Markov model:application to complete genomes. J Mol Biol. 305(3):567–580. doi 10.1006/jmbi.2000.4315 http://www.ncbi.nlm.nih.gov/pubmed/11152613 (http://www.ncbi.nlm.nih.gov/pubmed/11152613)
-
-
-
-
84
-
-
34250665888
-
-
Lagesen K, Hallin P, Rodland EA, Staerfeldt HH, Rognes T, Ussery DW. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35(9):3100–3108. doi gkm160 [pii]10.1093/nar/gkm160
-
Lagesen K, Hallin P, Rodland EA, Staerfeldt HH, Rognes T, Ussery DW. 2007. RNAmmer:consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35(9):3100–3108. doi gkm160 [pii]10.1093/nar/gkm160 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17452365 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17452365)
-
-
-
-
85
-
-
72749089855
-
-
Lee YS, Shibata Y, Malhotra A, Dutta A. 2009. A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). Genes Dev. 23(22):2639–2649. doi 23/22/2639 [pii]10.1101/gad.1837609
-
Lee YS, Shibata Y, Malhotra A, Dutta A. 2009. A novel class of small RNAs:tRNA-derived RNA fragments (tRFs). Genes Dev. 23(22):2639–2649. doi 23/22/2639 [pii]10.1101/gad.1837609 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19933153 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19933153)
-
-
-
-
86
-
-
80052394068
-
-
Lejeune E, Bayne EH, Allshire RC. 2011. On the Connection between RNAi and Heterochromatin at Centromeres. Cold Spring Harb Symp Quant Biol. doi sqb.2010.75.024 [pii]10.1101/sqb.2010.75.024
-
Lejeune E, Bayne EH, Allshire RC. 2011. On the Connection between RNAi and Heterochromatin at Centromeres. Cold Spring Harb Symp Quant Biol. doi sqb.2010.75.024 [pii]10.1101/sqb.2010.75.024 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=21289046 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=21289046)
-
-
-
-
87
-
-
77952670452
-
-
Lerat E. 2010. Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs. Heredity 104(6):520–533. doi hdy2009165 [pii]10.1038/hdy.2009.165
-
Lerat E. 2010. Identifying repeats and transposable elements in sequenced genomes:how to find your way through the dense forest of programs. Heredity 104(6):520–533. doi hdy2009165 [pii]10.1038/hdy.2009.165 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19935826 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19935826)
-
-
-
-
88
-
-
0012306021
-
-
Lewis SE, Searle SM, Harris N, Gibson M, Lyer V, Richter J, Wiel C, Bayraktaroglir L, Birney E, Crosby MA, et al. 2002. Apollo: a sequence annotation editor. Genome Biol. 3(12):RESEARCH0082
-
Lewis SE, Searle SM, Harris N, Gibson M, Lyer V, Richter J, Wiel C, Bayraktaroglir L, Birney E, Crosby MA, et al. 2002. Apollo:a sequence annotation editor. Genome Biol. 3(12):RESEARCH0082. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12537571 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12537571)
-
-
-
-
89
-
-
0003421005
-
-
Sunderland, Mass: Sinauer Associates. Wen-Hsiung Li. ill
-
Li, W-H., 1997. Molecular evolution, Sunderland, Mass:Sinauer Associates. Wen-Hsiung Li. ill.
-
(1997)
Molecular evolution
-
-
Li, W.-H.1
-
90
-
-
0019726330
-
-
Li W-H, Gojobori T, Nei M. 1981. Pseudogenes as a paradigm of neutral evolution. Nature. 292(5820):237–239
-
Li W-H, Gojobori T, Nei M. 1981. Pseudogenes as a paradigm of neutral evolution. Nature. 292(5820):237–239. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=7254315 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=7254315)
-
-
-
-
91
-
-
38849101777
-
-
Lin MF, Carlson JW, Crosby MA, Matthews BB, Yu C, Park S, Wan KH, Schroeder AJ, Gramates LS, St Pierre SE, et al. 2007. Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes. Genome Res. 17(12):1823–1836. doi 10.1101/gr.6679507
-
Lin MF, Carlson JW, Crosby MA, Matthews BB, Yu C, Park S, Wan KH, Schroeder AJ, Gramates LS, St Pierre SE, et al. 2007. Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes. Genome Res. 17(12):1823–1836. doi 10.1101/gr.6679507 http://www.ncbi.nlm.nih.gov/pubmed/17989253 (http://www.ncbi.nlm.nih.gov/pubmed/17989253)
-
-
-
-
92
-
-
0030854739
-
-
Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25(5):955–964
-
Lowe TM, Eddy SR. 1997. tRNAscan-SE:a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25(5):955–964. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9023104 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9023104)
-
-
-
-
93
-
-
0032519353
-
-
Lukashin AV, Borodovsky M. 1998. GeneMark.hmm: new solutions for gene finding. Nucleic Acids Res. 26(4):1107–1115
-
Lukashin AV, Borodovsky M. 1998. GeneMark.hmm:new solutions for gene finding. Nucleic Acids Res. 26(4):1107–1115. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9461475 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9461475)
-
-
-
-
94
-
-
68249097196
-
-
Ma LJ, Ibrahim AS, Skory C, Grabherr MG, Burger G, Butler M, Elias M, Idnurm A, Lang BF, Sone T, et al. 2009. Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication. PLoS Genet. 5(7):e1000549. doi 10.1371/journal.pgen.1000549
-
Ma LJ, Ibrahim AS, Skory C, Grabherr MG, Burger G, Butler M, Elias M, Idnurm A, Lang BF, Sone T, et al. 2009. Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication. PLoS Genet. 5(7):e1000549. doi 10.1371/journal.pgen.1000549 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19578406 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19578406)
-
-
-
-
95
-
-
77949714038
-
-
Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, Dufresne M, Freitag M, Grabherr M, Henrissat B, et al. 2010. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature. 464(7287):367–373. doi nature08850 [pii]10.1038/nature08850
-
Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, Dufresne M, Freitag M, Grabherr M, Henrissat B, et al. 2010. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature. 464(7287):367–373. doi nature08850 [pii]10.1038/nature08850 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20237561 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20237561)
-
-
-
-
96
-
-
0036806311
-
-
Manning G, Plowman GD, Hunter T, Sudarsanam S. 2002. Evolution of protein kinase signaling from yeast to man. Trends Biochem Sci. 27(10):514–520. doi S0968000402021795 [pii]
-
Manning G, Plowman GD, Hunter T, Sudarsanam S. 2002. Evolution of protein kinase signaling from yeast to man. Trends Biochem Sci. 27(10):514–520. doi S0968000402021795 [pii] http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12368087 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12368087)
-
-
-
-
97
-
-
0242417617
-
-
Massey SE, Moura G, Beltrao P, Almeida R, Garey JR, Tuite MF, Santos MA. 2003. Comparative evolutionary genomics unveils the molecular mechanism of reassignment of the CTG codon in Candida spp. Genome Res. 13(4):544–557. doi 10.1101/gr.811003
-
Massey SE, Moura G, Beltrao P, Almeida R, Garey JR, Tuite MF, Santos MA. 2003. Comparative evolutionary genomics unveils the molecular mechanism of reassignment of the CTG codon in Candida spp. Genome Res. 13(4):544–557. doi 10.1101/gr.811003 http://www.ncbi.nlm.nih.gov/pubmed/12670996 (http://www.ncbi.nlm.nih.gov/pubmed/12670996)
-
-
-
-
98
-
-
85142175392
-
-
Majoros WH, Pertea M, Salzberg SL. 2004. TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders. Bioinformatics 20(16):2878–2879
-
Majoros WH, Pertea M, Salzberg SL. 2004. TigrScan and GlimmerHMM:two open source ab initio eukaryotic gene-finders. Bioinformatics 20(16):2878–2879. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15145805 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15145805)
-
-
-
-
99
-
-
85142163771
-
-
Majoros WH, Pertea M, Salzberg SL. 2005. Efficient implementation of a generalized pair hidden Markov model for comparative gene finding. Bioinformatics. 21(9):1782–1788
-
Majoros WH, Pertea M, Salzberg SL. 2005. Efficient implementation of a generalized pair hidden Markov model for comparative gene finding. Bioinformatics. 21(9):1782–1788. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15691859 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15691859)
-
-
-
-
100
-
-
45549108577
-
-
McGuire AM, Pearson MD, Neafsey DE, Galagan JE. 2008. Cross-kingdom patterns of alternative splicing and splice recognition. Genome Biol. 9(3):R50. doi 10.1186/gb-2008-9-3-r50
-
McGuire AM, Pearson MD, Neafsey DE, Galagan JE. 2008. Cross-kingdom patterns of alternative splicing and splice recognition. Genome Biol. 9(3):R50. doi 10.1186/gb-2008-9-3-r50 http://www.ncbi.nlm.nih.gov/pubmed/18321378 (http://www.ncbi.nlm.nih.gov/pubmed/18321378)
-
-
-
-
101
-
-
0033955368
-
-
Mighell AJ, Smith NR, Robinson PA, Markham AF. 2000. Vertebrate pseudogenes. FEBS Lett. 468(2–3):109–114
-
Mighell AJ, Smith NR, Robinson PA, Markham AF. 2000. Vertebrate pseudogenes. FEBS Lett. 468(2–3):109–114. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10692568 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10692568)
-
-
-
-
102
-
-
0002636459
-
-
Misra S, Crosby MA, Mungall CJ, Matthews BB, Campbell KS, Hradecky P, Huang Y, Kaminker JS, Millburn GH, Prochnik SE, et al. 2002. Annotation of the Drosophila melanogaster euchromatic genome: a systematic review. Genome Biol. 3(12):RESEARCH0083
-
Misra S, Crosby MA, Mungall CJ, Matthews BB, Campbell KS, Hradecky P, Huang Y, Kaminker JS, Millburn GH, Prochnik SE, et al. 2002. Annotation of the Drosophila melanogaster euchromatic genome:a systematic review. Genome Biol. 3(12):RESEARCH0083. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12537572 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12537572)
-
-
-
-
103
-
-
34147162419
-
-
Mitrovich QM, Tuch BB, Guthrie C, Johnson AD. 2007. Computational and experimental approaches double the number of known introns in the pathogenic yeast Candida albicans. Genome Res. 17(4):492–502. doi 10.1101/gr.6111907
-
Mitrovich QM, Tuch BB, Guthrie C, Johnson AD. 2007. Computational and experimental approaches double the number of known introns in the pathogenic yeast Candida albicans. Genome Res. 17(4):492–502. doi 10.1101/gr.6111907 http://www.ncbi.nlm.nih.gov/pubmed/17351132 (http://www.ncbi.nlm.nih.gov/pubmed/17351132)
-
-
-
-
104
-
-
0030870076
-
-
Mott R. 1997. EST_GENOME: a program to align spliced DNA sequences to unspliced genomic DNA. Comput Appl Biosci. 13(4):477–478
-
Mott R. 1997. EST_GENOME:a program to align spliced DNA sequences to unspliced genomic DNA. Comput Appl Biosci. 13(4):477–478. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9283765 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9283765)
-
-
-
-
105
-
-
33646253928
-
-
Nemecek JC, Wuthrich M, Klein BS. 2006. Global control of dimorphism and virulence in fungi. Science 312(5773):583–588. doi 312/5773/583 [pii] 10.1126/science.1124105
-
Nemecek JC, Wuthrich M, Klein BS. 2006. Global control of dimorphism and virulence in fungi. Science 312(5773):583–588. doi 312/5773/583 [pii] 10.1126/science.1124105 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16645097 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16645097)
-
-
-
-
106
-
-
34447096489
-
-
Nemecek JC, Wuthrich M, Klein BS. 2007. Detection and measurement of two-component systems that control dimorphism and virulence in fungi. Methods Enzymol. 422:465–487. doi S0076-6879(06)22024-X [pii] 10.1016/S0076-6879(06)22024-X
-
Nemecek JC, Wuthrich M, Klein BS. 2007. Detection and measurement of two-component systems that control dimorphism and virulence in fungi. Methods Enzymol. 422:465–487. doi S0076-6879(06)22024-X [pii] 10.1016/S0076-6879(06)22024-X http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17628155 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17628155)
-
-
-
-
107
-
-
0642285627
-
-
Nelson P, Kiriakidou M, Sharma A, Maniataki E, Mourelatos Z. 2003. The microRNA world: small is mighty. Trends Biochem Sci. 28(10):534–540
-
Nelson P, Kiriakidou M, Sharma A, Maniataki E, Mourelatos Z. 2003. The microRNA world:small is mighty. Trends Biochem Sci. 28(10):534–540. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14559182 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14559182)
-
-
-
-
108
-
-
78649720695
-
-
Nicholson P, Muhlemann O. 2010. Cutting the nonsense: the degradation of PTC-containing mRNAs. Biochemical Soc Trans. 38(6):1615–1620. doi 10.1042/BST0381615
-
Nicholson P, Muhlemann O. 2010. Cutting the nonsense:the degradation of PTC-containing mRNAs. Biochemical Soc Trans. 38(6):1615–1620. doi 10.1042/BST0381615 http://www.ncbi.nlm.nih.gov/pubmed/21118136 (http://www.ncbi.nlm.nih.gov/pubmed/21118136)
-
-
-
-
109
-
-
79956022134
-
-
Otto TD, Dillon GP, Degrave WS, Berriman M. 2011. RATT: Rapid Annotation Transfer Tool. Nucleic Acids Res. doi gkq1268 [pii] 10.1093/nar/gkq1268
-
Otto TD, Dillon GP, Degrave WS, Berriman M. 2011. RATT:Rapid Annotation Transfer Tool. Nucleic Acids Res. doi gkq1268 [pii] 10.1093/nar/gkq1268 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=21306991 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=21306991)
-
-
-
-
110
-
-
0036112213
-
-
Pachter L, Alexandersson M, Cawley S. 2002. Applications of generalized pair hidden Markov models to alignment and gene finding problems. J Comput Biol. 9(2):389–399
-
Pachter L, Alexandersson M, Cawley S. 2002. Applications of generalized pair hidden Markov models to alignment and gene finding problems. J Comput Biol. 9(2):389–399. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12015888 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12015888)
-
-
-
-
111
-
-
38549176698
-
-
Park J, Park B, Jung K, Jang S, Yu K, Choi J, Kong S, Kim S, Kim H, Kim JF, et al. 2008. CFGP: a web-based, comparative fungal genomics platform. Nucleic Acids Res. 36(Database issue):D562–571. doi gkm758 [pii] 10.1093/nar/gkm758
-
Park J, Park B, Jung K, Jang S, Yu K, Choi J, Kong S, Kim S, Kim H, Kim JF, et al. 2008. CFGP:a web-based, comparative fungal genomics platform. Nucleic Acids Res. 36(Database issue):D562–571. doi gkm758 [pii] 10.1093/nar/gkm758 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17947331 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17947331)
-
-
-
-
112
-
-
0034061137
-
-
Parra G, Blanco E, Guigo R. 2000. GeneID in Drosophila. Genome Res. 10(4):511–515
-
Parra G, Blanco E, Guigo R. 2000. GeneID in Drosophila. Genome Res. 10(4):511–515. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10779490 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10779490)
-
-
-
-
113
-
-
0037268583
-
-
Parra G, Agarwal P, Abril JF, Wiehe T, Fickett JW, Guigo R. 2003. Comparative gene prediction in human and mouse. Genome Res. 13(1):108–117
-
Parra G, Agarwal P, Abril JF, Wiehe T, Fickett JW, Guigo R. 2003. Comparative gene prediction in human and mouse. Genome Res. 13(1):108–117. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12529313 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12529313)
-
-
-
-
114
-
-
34249848751
-
-
Parra G, Bradnam K, Korf I. 2007. CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 23(9):1061–1067. doi btm071 [pii] 10.1093/bioinformatics/btm071
-
Parra G, Bradnam K, Korf I. 2007. CEGMA:a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 23(9):1061–1067. doi btm071 [pii] 10.1093/bioinformatics/btm071 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17332020 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17332020)
-
-
-
-
115
-
-
54149086299
-
-
Pierleoni A, Martelli PL, Casadio R. 2008. PredGPI: a GPI-anchor predictor. BMC Bioinformatics 9:392. doi 1471-2105-9-392 [pii] 10.1186/1471-2105-9-392
-
Pierleoni A, Martelli PL, Casadio R. 2008. PredGPI:a GPI-anchor predictor. BMC Bioinformatics 9:392. doi 1471-2105-9-392 [pii] 10.1186/1471-2105-9-392 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18811934 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18811934)
-
-
-
-
116
-
-
29144455282
-
-
Price AL, Jones NC, Pevzner PA. 2005. De novo identification of repeat families in large genomes. Bioinformatics 21 Suppl 1:i351–358
-
Price AL, Jones NC, Pevzner PA. 2005. De novo identification of repeat families in large genomes. Bioinformatics 21 Suppl 1:i351–358. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15961478 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15961478)
-
-
-
-
117
-
-
37549027613
-
-
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glockner FO. 2007. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35(21):7188–7196. doi gkm864 [pii] 10.1093/nar/gkm864
-
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glockner FO. 2007. SILVA:a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35(21):7188–7196. doi gkm864 [pii] 10.1093/nar/gkm864 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17947321 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17947321)
-
-
-
-
118
-
-
0345864015
-
-
Rawlings ND, Tolle DP, Barrett AJ. 2004. MEROPS: the peptidase database. Nucleic Acids Res. 32(Database issue):D160–164. doi 10.1093/nar/gkh071 32/suppl_1/D160 [pii]
-
Rawlings ND, Tolle DP, Barrett AJ. 2004. MEROPS:the peptidase database. Nucleic Acids Res. 32(Database issue):D160–164. doi 10.1093/nar/gkh071 32/suppl_1/D160 [pii] http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14681384 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14681384)
-
-
-
-
119
-
-
79956319465
-
-
Rhind N, Chen Z, Yassour M, Thompson DA, Haas BJ, Habib N, Wapinski I, Roy S, Lin MF, Heiman DI, et al. 2011. Comparative functional genomics of the fission yeasts. Science 332(6032):930–936. doi 10.1126/science.1203357
-
Rhind N, Chen Z, Yassour M, Thompson DA, Haas BJ, Habib N, Wapinski I, Roy S, Lin MF, Heiman DI, et al. 2011. Comparative functional genomics of the fission yeasts. Science 332(6032):930–936. doi 10.1126/science.1203357 http://www.ncbi.nlm.nih.gov/pubmed/21511999 (http://www.ncbi.nlm.nih.gov/pubmed/21511999)
-
-
-
-
120
-
-
38549131780
-
-
Rossignol T, Lechat P, Cuomo C, Zeng Q, Moszer I, d’Enfert C. 2008. CandidaDB: a multi-genome database for Candida species and related Saccharomycotina. Nucleic Acids Res. 36(Database issue):D557–561. doi gkm1010 [pii] 10.1093/nar/gkm1010
-
Rossignol T, Lechat P, Cuomo C, Zeng Q, Moszer I, d’Enfert C. 2008. CandidaDB:a multi-genome database for Candida species and related Saccharomycotina. Nucleic Acids Res. 36(Database issue):D557–561. doi gkm1010 [pii] 10.1093/nar/gkm1010 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18039716 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18039716)
-
-
-
-
121
-
-
0033635022
-
-
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B. 2000. Artemis: sequence visualization and annotation. Bioinformatics 16(10):944–945
-
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B. 2000. Artemis:sequence visualization and annotation. Bioinformatics 16(10):944–945. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11120685 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11120685)
-
-
-
-
122
-
-
0034065724
-
-
Salamov AA, Solovyev VV. 2000. Ab initio gene finding in Drosophila genomic DNA. Genome Res. 10(4):516–522
-
Salamov AA, Solovyev VV. 2000. Ab initio gene finding in Drosophila genomic DNA. Genome Res. 10(4):516–522. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10779491 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10779491)
-
-
-
-
123
-
-
0034625260
-
-
Schmucker D, Clemens JC, Shu H, Worby CA, Xiao J, Muda M, Dixon JE, Zipursky SL. 2000. Drosophila Dscam is an axon guidance receptor exhibiting extraordinary molecular diversity. Cell 101(6):671–684
-
Schmucker D, Clemens JC, Shu H, Worby CA, Xiao J, Muda M, Dixon JE, Zipursky SL. 2000. Drosophila Dscam is an axon guidance receptor exhibiting extraordinary molecular diversity. Cell 101(6):671–684. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10892653 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10892653)
-
-
-
-
124
-
-
33644863282
-
-
Schwarz EM, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Canaran P, Chan J, Chen N, Chen WJ, Davis P, et al. 2006. WormBase: better software, richer content. Nucleic Acids Res. 34(Database issue):D475–478
-
Schwarz EM, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Canaran P, Chan J, Chen N, Chen WJ, Davis P, et al. 2006. WormBase:better software, richer content. Nucleic Acids Res. 34(Database issue):D475–478. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16381915 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16381915)
-
-
-
-
125
-
-
19044397450
-
-
Shapiro JA, von Sternberg R. 2005. Why repetitive DNA is essential to genome function. Biol Rev Camb Philos Soc. 80(2):227–250
-
Shapiro JA, von Sternberg R. 2005. Why repetitive DNA is essential to genome function. Biol Rev Camb Philos Soc. 80(2):227–250. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15921050 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15921050)
-
-
-
-
126
-
-
70349645483
-
-
Sharpton TJ, Stajich JE, Rounsley SD, Gardner MJ, Wortman JR, Jordar VS, Maiti R, Kodira CD, Neafsey DE, Zeng Q, et al. 2009. Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives. Genome Res. 19(10):1722–1731. Available fromDoi gr.087551.108 [pii]10.1101/gr.087551.108
-
Sharpton TJ, Stajich JE, Rounsley SD, Gardner MJ, Wortman JR, Jordar VS, Maiti R, Kodira CD, Neafsey DE, Zeng Q, et al. 2009. Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives. Genome Res. 19(10):1722–1731. Available fromDoi gr.087551.108 [pii]10.1101/gr.087551.108 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19717792. (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19717792.)
-
-
-
-
127
-
-
49749136166
-
-
Shelest E. 2008. Transcription factors in fungi. FEMS Microbiol Lett. 286(2):145–151. doi FML1293 [pii] 10.1111/j.1574-6968.2008.01293.x
-
Shelest E. 2008. Transcription factors in fungi. FEMS Microbiol Lett. 286(2):145–151. doi FML1293 [pii] 10.1111/j.1574-6968.2008.01293.x http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18789126 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18789126)
-
-
-
-
128
-
-
24044447664
-
-
Slater GS, Birney E. 2005. Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics 6:31
-
Slater GS, Birney E. 2005. Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics 6:31. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15713233 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15713233)
-
-
-
-
129
-
-
85024208892
-
-
Smit A, Hubley R. RepeatModeler
-
Smit A, Hubley R. RepeatModeler http://wwwrepeatmaskerorg/RepeatModelerhtml (http://wwwrepeatmaskerorg/RepeatModelerhtml)
-
-
-
-
130
-
-
78650122420
-
-
Spanu PD, Abbott JC, Amselem J, Burgis TA, Soanes DM, Stuber K, Ver Loren van Themaat E, Brown JK, Butcher SA, Gurr SJ, et al. 2010. Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science 330(6010):1543–1546. doi 330/6010/1543 [pii] 10.1126/science.1194573
-
Spanu PD, Abbott JC, Amselem J, Burgis TA, Soanes DM, Stuber K, Ver Loren van Themaat E, Brown JK, Butcher SA, Gurr SJ, et al. 2010. Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science 330(6010):1543–1546. doi 330/6010/1543 [pii] 10.1126/science.1194573 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=21148392 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=21148392)
-
-
-
-
131
-
-
85024163373
-
-
Stajich JE. Available
-
Stajich JE. http://fungalgenomes.org/. http://fungalgenomesorg/. Available
-
-
-
-
132
-
-
77955350734
-
-
Stajich JE, Wilke SK, Ahren D, Au CH, Birren BW, Borodovsky M, Burns C, Canback B, Casselton LA, Cheng CK, et al. 2010. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Proc Natl Acad Sci USA 107(26):11889–11894. doi 1003391107 [pii] 10.1073/pnas.1003391107
-
Stajich JE, Wilke SK, Ahren D, Au CH, Birren BW, Borodovsky M, Burns C, Canback B, Casselton LA, Cheng CK, et al. 2010. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Proc Natl Acad Sci USA 107(26):11889–11894. doi 1003391107 [pii] 10.1073/pnas.1003391107 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20547848 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20547848)
-
-
-
-
133
-
-
46049110089
-
-
Stalder L, Muhlemann O. 2008. The meaning of nonsense. Trends Cell Biol. 18(7):315–321. doi 10.1016/j.tcb.2008.04.005
-
Stalder L, Muhlemann O. 2008. The meaning of nonsense. Trends Cell Biol. 18(7):315–321. doi 10.1016/j.tcb.2008.04.005 http://www.ncbi.nlm.nih.gov/pubmed/18524595 (http://www.ncbi.nlm.nih.gov/pubmed/18524595)
-
-
-
-
134
-
-
12344250822
-
-
Stamm S, Ben-Ari S, Rafalska I, Tang Y, Zhang Z, Toiber D, Thanaraj TA, Soreq H. 2005. Function of alternative splicing. Gene 344:1–20
-
Stamm S, Ben-Ari S, Rafalska I, Tang Y, Zhang Z, Toiber D, Thanaraj TA, Soreq H. 2005. Function of alternative splicing. Gene 344:1–20. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15656968 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15656968)
-
-
-
-
135
-
-
85142150283
-
-
Stanke M, Waack S. 2003. Gene prediction with a hidden Markov model and a new intron submodel. Bioinformatics 19 Suppl 2:II215-II225
-
Stanke M, Waack S. 2003. Gene prediction with a hidden Markov model and a new intron submodel. Bioinformatics 19 Suppl 2:II215-II225. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14534192 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14534192)
-
-
-
-
136
-
-
33645161645
-
-
Stanke M, Schoffmann O, Morgenstern B, Waack S. 2006. Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources. BMC Bioinformatics 7:62
-
Stanke M, Schoffmann O, Morgenstern B, Waack S. 2006. Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources. BMC Bioinformatics 7:62. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16469098 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16469098)
-
-
-
-
137
-
-
67649550674
-
-
Stergiopoulos I, de Wit PJ. 2009. Fungal effector proteins. Annu Rev Phytopathol. 47:233–263. doi 10.1146/annurev.phyto.112408.132637
-
Stergiopoulos I, de Wit PJ. 2009. Fungal effector proteins. Annu Rev Phytopathol. 47:233–263. doi 10.1146/annurev.phyto.112408.132637 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19400631 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19400631)
-
-
-
-
138
-
-
0042888744
-
-
Szymanski M, Barciszewska MZ, Zywicki M, Barciszewski J. 2003. Noncoding RNA transcripts. J Appl Genet. 44(1):1–19
-
Szymanski M, Barciszewska MZ, Zywicki M, Barciszewski J. 2003. Noncoding RNA transcripts. J Appl Genet. 44(1):1–19. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12590177 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12590177)
-
-
-
-
139
-
-
63049126614
-
-
Tarailo-Graovac M, Chen N. 2009. Using RepeatMasker to identify repetitive elements in genomic sequences. Curr Protoc Bioinformatics Chapter 4:Unit 4 10. doi 10.1002/0471250953.bi0410s25
-
Tarailo-Graovac M, Chen N. 2009. Using RepeatMasker to identify repetitive elements in genomic sequences. Curr Protoc Bioinformatics Chapter 4:Unit 4 10. doi 10.1002/0471250953.bi0410s25 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19274634 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19274634)
-
-
-
-
140
-
-
13444283853
-
-
Tateno Y, Saitou N, Okubo K, Sugawara H, Gojobori T. 2005. DDBJ in collaboration with mass-sequencing teams on annotation. Nucleic Acids Res. 33(Database issue):D25–28
-
Tateno Y, Saitou N, Okubo K, Sugawara H, Gojobori T. 2005. DDBJ in collaboration with mass-sequencing teams on annotation. Nucleic Acids Res. 33(Database issue):D25–28. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15608189 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15608189)
-
-
-
-
141
-
-
0042902833
-
-
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, et al. 2003. The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4:41. doi 10.1186/1471-2105-4-41
-
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, et al. 2003. The COG database:an updated version includes eukaryotes. BMC Bioinformatics 4:41. doi 10.1186/1471-2105-4-41 http://www.ncbi.nlm.nih.gov/pubmed/12969510 (http://www.ncbi.nlm.nih.gov/pubmed/12969510)
-
-
-
-
142
-
-
57149099395
-
-
Ter-Hovhannisyan V, Lomsadze A, Chernoff YO, Borodovsky M. 2008. Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. Genome Res. 18(12):1979–1990. doi gr.081612.108 [pii] 10.1101/gr.081612.108
-
Ter-Hovhannisyan V, Lomsadze A, Chernoff YO, Borodovsky M. 2008. Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. Genome Res. 18(12):1979–1990. doi gr.081612.108 [pii] 10.1101/gr.081612.108 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18757608 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18757608)
-
-
-
-
143
-
-
41649103252
-
-
Torriani SF, Goodwin SB, Kema GH, Pangilinan JL, McDonald BA. 2008. Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola. Fungal Genet Biol. 45(5):628–637. doi 10.1016/j.fgb.2007.12.005
-
Torriani SF, Goodwin SB, Kema GH, Pangilinan JL, McDonald BA. 2008. Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola. Fungal Genet Biol. 45(5):628–637. doi 10.1016/j.fgb.2007.12.005 http://www.ncbi.nlm.nih.gov/pubmed/18226935 (http://www.ncbi.nlm.nih.gov/pubmed/18226935)
-
-
-
-
144
-
-
65449136284
-
-
Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25(9):1105–1111. doi 10.1093/bioinformatics/btp120
-
Trapnell C, Pachter L, Salzberg SL. 2009. TopHat:discovering splice junctions with RNA-Seq. Bioinformatics 25(9):1105–1111. doi 10.1093/bioinformatics/btp120 http://www.ncbi.nlm.nih.gov/pubmed/19289445 (http://www.ncbi.nlm.nih.gov/pubmed/19289445)
-
-
-
-
145
-
-
85142140060
-
-
Usuka J, Zhu W, Brendel V. 2000. Optimal spliced alignment of homologous cDNA to a genomic DNA template. Bioinformatics 16(3):203–211
-
Usuka J, Zhu W, Brendel V. 2000. Optimal spliced alignment of homologous cDNA to a genomic DNA template. Bioinformatics 16(3):203–211. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10869013 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=10869013)
-
-
-
-
146
-
-
79961197590
-
-
Valach M, Farkas Z, Fricova D, Kovac J, Brejova B, Vinar T, Pfeiffer I, Kucsera J, Tomaska L, Lang BF, et al. 2011. Evolution of linear chromosomes and multipartite genomes in yeast mitochondria. Nucleic Acids Res. doi 10.1093/nar/gkq1345
-
Valach M, Farkas Z, Fricova D, Kovac J, Brejova B, Vinar T, Pfeiffer I, Kucsera J, Tomaska L, Lang BF, et al. 2011. Evolution of linear chromosomes and multipartite genomes in yeast mitochondria. Nucleic Acids Res. doi 10.1093/nar/gkq1345 http://www.ncbi.nlm.nih.gov/pubmed/21266473 (http://www.ncbi.nlm.nih.gov/pubmed/21266473)
-
-
-
-
147
-
-
33745173827
-
-
van Baren MJ, Brent MR. 2006. Iterative gene prediction and pseudogene removal improves genome annotation. Genome Res. 16(5):678–685
-
van Baren MJ, Brent MR. 2006. Iterative gene prediction and pseudogene removal improves genome annotation. Genome Res. 16(5):678–685. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16651666 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16651666)
-
-
-
-
148
-
-
79951574071
-
-
Vlcek C, Marande W, Teijeiro S, Lukes J, Burger G. 2011. Systematically fragmented genes in a multipartite mitochondrial genome. Nucleic Acids Res. 39(3):979–988. doi 10.1093/nar/gkq883
-
Vlcek C, Marande W, Teijeiro S, Lukes J, Burger G. 2011. Systematically fragmented genes in a multipartite mitochondrial genome. Nucleic Acids Res. 39(3):979–988. doi 10.1093/nar/gkq883 http://www.ncbi.nlm.nih.gov/pubmed/20935050 (http://www.ncbi.nlm.nih.gov/pubmed/20935050)
-
-
-
-
149
-
-
33646484347
-
-
Wang BB, Brendel V. 2006. Genomewide comparative analysis of alternative splicing in plants. Proc Natl Acad Sci USA 103(18):7175–7180
-
Wang BB, Brendel V. 2006. Genomewide comparative analysis of alternative splicing in plants. Proc Natl Acad Sci USA 103(18):7175–7180. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16632598 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16632598)
-
-
-
-
150
-
-
56549101959
-
-
Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB. 2008. Alternative isoform regulation in human tissue transcriptomes. Nature 456(7221):470–476. doi 10.1038/nature07509
-
Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB. 2008. Alternative isoform regulation in human tissue transcriptomes. Nature 456(7221):470–476. doi 10.1038/nature07509 http://www.ncbi.nlm.nih.gov/pubmed/18978772 (http://www.ncbi.nlm.nih.gov/pubmed/18978772)
-
-
-
-
151
-
-
78649345104
-
-
Wang K, Singh D, Zeng Z, Coleman SJ, Huang Y, Savich GL, He X, Mieczkowski P, Grimm SA, Perou CM, et al. 2010. MapSplice: accurate mapping of RNA-seq reads for splice junction discovery. Nucleic Acids Res. 38(18):e178. doi 10.1093/nar/gkq622
-
Wang K, Singh D, Zeng Z, Coleman SJ, Huang Y, Savich GL, He X, Mieczkowski P, Grimm SA, Perou CM, et al. 2010. MapSplice:accurate mapping of RNA-seq reads for splice junction discovery. Nucleic Acids Res. 38(18):e178. doi 10.1093/nar/gkq622 http://www.ncbi.nlm.nih.gov/pubmed/20802226 (http://www.ncbi.nlm.nih.gov/pubmed/20802226)
-
-
-
-
152
-
-
0035189310
-
-
Wheelan SJ, Church DM, Ostell JM. 2001. Spidey: a tool for mRNA-to-genomic alignments. Genome Res. 11(11):1952–1957
-
Wheelan SJ, Church DM, Ostell JM. 2001. Spidey:a tool for mRNA-to-genomic alignments. Genome Res. 11(11):1952–1957. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11691860 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11691860)
-
-
-
-
153
-
-
0034832202
-
-
Wiehe T, Gebauer-Jung S, Mitchell-Olds T, Guigo R. 2001. SGP-1: prediction and validation of homologous genes based on sequence alignments. Genome Res. 11(9):1574–1583
-
Wiehe T, Gebauer-Jung S, Mitchell-Olds T, Guigo R. 2001. SGP-1:prediction and validation of homologous genes based on sequence alignments. Genome Res. 11(9):1574–1583. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11544202 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11544202)
-
-
-
-
154
-
-
0346996715
-
-
Woo PC, Zhen H, Cai JJ, Yu J, Lau SK, Wang J, Teng JL, Wong SS, Tse RH, Chen R, et al. 2003. The mitochondrial genome of the thermal dimorphic fungus Penicillium marneffei is more closely related to those of molds than yeasts. FEBS Lett. 555(3):469–477
-
Woo PC, Zhen H, Cai JJ, Yu J, Lau SK, Wang J, Teng JL, Wong SS, Tse RH, Chen R, et al. 2003. The mitochondrial genome of the thermal dimorphic fungus Penicillium marneffei is more closely related to those of molds than yeasts. FEBS Lett. 555(3):469–477. http://www.ncbi.nlm.nih.gov/pubmed/14675758 (http://www.ncbi.nlm.nih.gov/pubmed/14675758)
-
-
-
-
155
-
-
0038797803
-
-
Wortman JR, Haas BJ, Hannick LI, Smith RK, Jr., Maiti R, Ronning CM, Chan AP, Yu C, Ayele M, Whitelaw CA, et al. 2003. Annotation of the Arabidopsis genome. Plant Physiol. 132(2):461–468
-
Wortman JR, Haas BJ, Hannick LI, Smith RK, Jr., Maiti R, Ronning CM, Chan AP, Yu C, Ayele M, Whitelaw CA, et al. 2003. Annotation of the Arabidopsis genome. Plant Physiol. 132(2):461–468. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12805579 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12805579)
-
-
-
-
156
-
-
33644873213
-
-
Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, et al. 2006. The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res. 34(Database issue):D187–191
-
Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, et al. 2006. The Universal Protein Resource (UniProt):an expanding universe of protein information. Nucleic Acids Res. 34(Database issue):D187–191. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16381842 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16381842)
-
-
-
-
157
-
-
85142181335
-
-
Wu TD, Watanabe CK. 2005. GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 21(9):1859–1875
-
Wu TD, Watanabe CK. 2005. GMAP:a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 21(9):1859–1875. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15728110 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15728110)
-
-
-
-
158
-
-
77951820899
-
-
Wu TD, Nacu S. 2010. Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics 26(7):873–881. doi 10.1093/bioinformatics/btq057
-
Wu TD, Nacu S. 2010. Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics 26(7):873–881. doi 10.1093/bioinformatics/btq057 http://www.ncbi.nlm.nih.gov/pubmed/20147302 (http://www.ncbi.nlm.nih.gov/pubmed/20147302)
-
-
-
-
159
-
-
67649117759
-
-
Wu Y, Yang J, Yang F, Liu T, Leng W, Chu Y, Jin Q. 2009. Recent dermatophyte divergence revealed by comparative and phylogenetic analysis of mitochondrial genomes. BMC Genomics 10:238. doi 10.1186/1471-2164-10-238
-
Wu Y, Yang J, Yang F, Liu T, Leng W, Chu Y, Jin Q. 2009. Recent dermatophyte divergence revealed by comparative and phylogenetic analysis of mitochondrial genomes. BMC Genomics 10:238. doi 10.1186/1471-2164-10-238 http://www.ncbi.nlm.nih.gov/pubmed/19457268 (http://www.ncbi.nlm.nih.gov/pubmed/19457268)
-
-
-
-
160
-
-
53749087941
-
-
Xue C, Hsueh YP, Heitman J. 2008. Magnificent seven: roles of G protein-coupled receptors in extracellular sensing in fungi. FEMS Microbiol Rev. 32(6):1010–1032. doi FMR131 [pii] 10.1111/j.1574-6976.2008.00131.x
-
Xue C, Hsueh YP, Heitman J. 2008. Magnificent seven:roles of G protein-coupled receptors in extracellular sensing in fungi. FEMS Microbiol Rev. 32(6):1010–1032. doi FMR131 [pii] 10.1111/j.1574-6976.2008.00131.x http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18811658 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18811658)
-
-
-
-
161
-
-
0043123038
-
-
Yang G, Hall TC. 2003. MAK, a computational tool kit for automated MITE analysis. Nucleic Acids Res. 31(13):3659–3665
-
Yang G, Hall TC. 2003. MAK, a computational tool kit for automated MITE analysis. Nucleic Acids Res. 31(13):3659–3665. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12824388 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12824388)
-
-
-
-
162
-
-
0035002015
-
-
Yeh RF, Lim LP, Burge CB. 2001. Computational inference of homologous gene structures in the human genome. Genome Res. 11(5):803–816
-
Yeh RF, Lim LP, Burge CB. 2001. Computational inference of homologous gene structures in the human genome. Genome Res. 11(5):803–816. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11337476 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11337476)
-
-
-
-
163
-
-
0036733640
-
-
Zhang MQ. 2002. Computational prediction of eukaryotic protein-coding genes. Nat Rev Genet. 3(9):698–709
-
Zhang MQ. 2002. Computational prediction of eukaryotic protein-coding genes. Nat Rev Genet. 3(9):698–709. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12209144 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12209144)
-
-
-
-
164
-
-
3142594265
-
-
Zhang Z, Gerstein M. 2004. Large-scale analysis of pseudogenes in the human genome. Curr Opin Genet Dev. 14(4):328–335
-
Zhang Z, Gerstein M. 2004. Large-scale analysis of pseudogenes in the human genome. Curr Opin Genet Dev. 14(4):328–335. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15261647 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15261647)
-
-
-
-
165
-
-
85024181403
-
-
Zhang Z, Carriero N, Zheng D, Karro J, Harrison PM, Gerstein M. 2006. PseudoPipe: an automated pseudogene identification pipeline. Bioinformatics 22(12):1437–1439. doi 10.1093/bioinformatics/btl116
-
Zhang Z, Carriero N, Zheng D, Karro J, Harrison PM, Gerstein M. 2006. PseudoPipe:an automated pseudogene identification pipeline. Bioinformatics 22(12):1437–1439. doi 10.1093/bioinformatics/btl116 http://www.ncbi.nlm.nih.gov/pubmed/16574694 (http://www.ncbi.nlm.nih.gov/pubmed/16574694)
-
-
-
|