-
1
-
-
73949090104
-
Applications of ultra-high-throughput sequencing
-
Fox, S., Filichkin, S. and Mockler, T.C. (2009) Applications of ultra-high-throughput sequencing. Methods Mol. Biol., 553, 79-108.
-
(2009)
Methods Mol. Biol.
, vol.553
, pp. 79-108
-
-
Fox, S.1
Filichkin, S.2
Mockler, T.C.3
-
2
-
-
64449088698
-
Continuous base identification for single-molecule nanopore DNA sequencing
-
Clarke, J., Wu, H.C., Jayasinghe, L., Patel, A., Reid, S. and Bayley, H. (2009) Continuous base identification for single-molecule nanopore DNA sequencing. Nat. Nanotechnol., 4, 265-270.
-
(2009)
Nat. Nanotechnol.
, vol.4
, pp. 265-270
-
-
Clarke, J.1
Wu, H.C.2
Jayasinghe, L.3
Patel, A.4
Reid, S.5
Bayley, H.6
-
3
-
-
77950658346
-
Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps
-
Tsai, I.J., Otto, T.D. and Berriman, M. (2010) Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps. Genome Biol., 11, R41.
-
(2010)
Genome Biol.
, vol.11
-
-
Tsai, I.J.1
Otto, T.D.2
Berriman, M.3
-
4
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
DOI 10.1101/gr.074492.107
-
Zerbino, D.R. and Birney, E. (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res., 18, 821-829. (Pubitemid 351645072)
-
(2008)
Genome Research
, vol.18
, Issue.5
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
5
-
-
55549097836
-
Mapping short DNA sequencing reads and calling variants using mapping quality scores
-
Li, H., Ruan, J. and Durbin, R. (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res., 18, 1851-1858.
-
(2008)
Genome Res.
, vol.18
, pp. 1851-1858
-
-
Li, H.1
Ruan, J.2
Durbin, R.3
-
6
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. and Durbin, R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
7
-
-
34147132825
-
Identifying bacterial genes and endosymbiont DNA with Glimmer
-
DOI 10.1093/bioinformatics/btm009
-
Delcher, A.L., Bratke, K.A., Powers, E.C. and Salzberg, S.L. (2007) Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics, 23, 673-679. (Pubitemid 46554717)
-
(2007)
Bioinformatics
, vol.23
, Issue.6
, pp. 673-679
-
-
Delcher, A.L.1
Bratke, K.A.2
Powers, E.C.3
Salzberg, S.L.4
-
8
-
-
17444437765
-
Integrating genomic homology into gene structure prediction
-
Korf, I., Flicek, P., Duan, D. and Brent, M.R. (2001) Integrating genomic homology into gene structure prediction. Bioinformatics, 17(Suppl. 1), S140-S148. (Pubitemid 33793504)
-
(2001)
Bioinformatics
, vol.17
, Issue.SUPPL. 1
-
-
Korf, I.1
Flicek, P.2
Duan, D.3
Brent, M.R.4
-
9
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
DOI 10.1038/75556
-
Ashburner, M., Ball, C.A., Blake, J.A., Botstein, D., Butler, H., Cherry, J.M., Davis, A.P., Dolinski, K., Dwight, S.S., Eppig, J.T. et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 25, 25-29. (Pubitemid 30257031)
-
(2000)
Nature Genetics
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
10
-
-
0035408587
-
Genome annotation: From sequence to biology
-
DOI 10.1038/35080529
-
Stein, L. (2001) Genome annotation: from sequence to biology. Nat. Rev. Genet., 2, 493-503. (Pubitemid 33674023)
-
(2001)
Nature Reviews Genetics
, vol.2
, Issue.7
, pp. 493-503
-
-
Stein, L.1
-
11
-
-
58149185123
-
Ensembl 2009
-
Hubbard, T.J., Aken, B.L., Ayling, S., Ballester, B., Beal, K., Bragin, E., Brent, S., Chen, Y., Clapham, P., Clarke, L. et al. (2009) Ensembl 2009. Nucleic Acids Res., 37, D690-D697.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Hubbard, T.J.1
Aken, B.L.2
Ayling, S.3
Ballester, B.4
Beal, K.5
Bragin, E.6
Brent, S.7
Chen, Y.8
Clapham, P.9
Clarke, L.10
-
12
-
-
28444458843
-
GARSA: Genomic analysis resources for sequence annotation
-
DOI 10.1093/bioinformatics/bti705
-
Davila, A.M., Lorenzini, D.M., Mendes, P.N., Satake, T.S., Sousa, G.R., Campos, L.M., Mazzoni, C.J., Wagner, G., Pires, P.F., Grisard, E.C. et al. (2005) GARSA: genomic analysis resources for sequence annotation. Bioinformatics, 21, 4302-4303. (Pubitemid 41724311)
-
(2005)
Bioinformatics
, vol.21
, Issue.23
, pp. 4302-4303
-
-
Davila, A.M.R.1
Lorenzini, D.M.2
Mendes, P.N.3
Satake, T.S.4
Sousa, G.R.5
Campos, L.M.6
Mazzoni, C.J.7
Wagner, G.8
Pires, P.F.9
Grisard, E.C.10
Cavalcanti, M.C.R.11
Campos, M.L.M.12
-
13
-
-
8844261125
-
A System for Automated Bacterial (genome) Integrated Annotation - SABIA
-
DOI 10.1093/bioinformatics/bth273
-
Almeida, L.G., Paixao, R., Souza, R.C., Costa, G.C., Barrientos, F.J., Santos, M.T., Almeida, D.F. and Vasconcelos, A.T. (2004) A System for Automated Bacterial (genome) Integrated Annotation- SABIA. Bioinformatics, 20, 2832-2833. (Pubitemid 39530171)
-
(2004)
Bioinformatics
, vol.20
, Issue.16
, pp. 2832-2833
-
-
Almeida, L.G.P.1
Paixao, R.2
Souza, R.C.3
Da Costa, G.C.4
Barrientos, F.J.A.5
Trindade Dos Santos, M.6
De Almeida, D.F.7
Vasconcelos, A.T.R.8
-
14
-
-
40549120596
-
The RAST Server: Rapid annotations using subsystems technology
-
Aziz, R.K., Bartels, D., Best, A.A., DeJongh, M., Disz, T., Edwards, R.A., Formsma, K., Gerdes, S., Glass, E.M., Kubal, M. et al. (2008) The RAST Server: rapid annotations using subsystems technology. BMC Genomics, 9, 75.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
Dejongh, M.4
Disz, T.5
Edwards, R.A.6
Formsma, K.7
Gerdes, S.8
Glass, E.M.9
Kubal, M.10
-
15
-
-
75549083619
-
The integrated microbial genomes system: An expanding comparative analysis resource
-
Markowitz, V.M., Chen, I.M., Palaniappan, K., Chu, K., Szeto, E., Grechkin, Y., Ratner, A., Anderson, I., Lykidis, A., Mavromatis, K. et al. (2010) The integrated microbial genomes system: an expanding comparative analysis resource. Nucleic Acids Res., 38, D382-D390.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Markowitz, V.M.1
Chen, I.M.2
Palaniappan, K.3
Chu, K.4
Szeto, E.5
Grechkin, Y.6
Ratner, A.7
Anderson, I.8
Lykidis, A.9
Mavromatis, K.10
-
16
-
-
56649123520
-
Artemis and ACT: Viewing, annotating and comparing sequences stored in a relational database
-
DOI 10.1093/bioinformatics/btn529
-
Carver, T., Berriman, M., Tivey, A., Patel, C., Bohme, U., Barrell, B.G., Parkhill, J. and Rajandream, M.A. (2008) Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinformatics, 24, 2672-2676. (Pubitemid 352722607)
-
(2008)
Bioinformatics
, vol.24
, Issue.23
, pp. 2672-2676
-
-
Carver, T.1
Berriman, M.2
Tivey, A.3
Patel, C.4
Bohme, U.5
Barrell, B.G.6
Parkhill, J.7
Rajandream, M.-A.8
-
17
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Kurtz, S., Phillippy, A., Delcher, A.L., Smoot, M., Shumway, M., Antonescu, C. and Salzberg, S.L. (2004) Versatile and open software for comparing large genomes. Genome Biol., 5, R12.
-
(2004)
Genome Biol.
, vol.5
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
Antonescu, C.6
Salzberg, S.L.7
-
19
-
-
77954523593
-
Iterative correction of reference nucleotides (iCORN) using second generation sequencing technology
-
Otto, T.D., Sanders, M., Berriman, M. and Newbold, C. (2010) Iterative correction of reference nucleotides (iCORN) using second generation sequencing technology. Bioinformatics, 26, 1704-1707.
-
(2010)
Bioinformatics
, vol.26
, pp. 1704-1707
-
-
Otto, T.D.1
Sanders, M.2
Berriman, M.3
Newbold, C.4
-
20
-
-
67650735586
-
ABACAS: Algorithm-based automatic contiguation of assembled sequences
-
Assefa, S., Keane, T.M., Otto, T.D., Newbold, C. and Berriman, M. (2009) ABACAS: algorithm-based automatic contiguation of assembled sequences. Bioinformatics, 25, 1968-1969.
-
(2009)
Bioinformatics
, vol.25
, pp. 1968-1969
-
-
Assefa, S.1
Keane, T.M.2
Otto, T.D.3
Newbold, C.4
Berriman, M.5
|