메뉴 건너뛰기




Volumn 9, Issue , 2011, Pages

Differential chromatin proteomics of the MMS-induced DNA damage response in yeast

Author keywords

Chromatin; Differential; Dige; Dna damage; Fractionation; Mms; Proteomics

Indexed keywords

ACTIN RELATED PROTEIN 3; FUNGAL PROTEIN; MESYLIC ACID METHYL ESTER; PROTEIN ACF2; PROTEIN BMH1; PROTEIN HSP31; PROTEIN LSP1; PROTEIN PST2; PROTEIN RNR4; PROTEIN RPA1; PROTEIN RPA2; PROTEIN STE4; PROTEIN YCP4; PROTEIN YRB1; UNCLASSIFIED DRUG;

EID: 80053445897     PISSN: None     EISSN: 14775956     Source Type: Journal    
DOI: 10.1186/1477-5956-9-62     Document Type: Article
Times cited : (16)

References (58)
  • 1
    • 0035289178 scopus 로고    scopus 로고
    • Validation and development of fluorescence two-dimensional differential gel electrophoresis proteomics technology
    • 10.1002/1615-9861(200103)1:3<377::AID-PROT377>3.0.CO;2-6, 11680884
    • Tonge R, Shaw J, Middleton B, Rowlinson R, Rayner S, Young J, Pognan F, Hawkins E, Currie I, Davison M. Validation and development of fluorescence two-dimensional differential gel electrophoresis proteomics technology. Proteomics 2001, 1:377-396. 10.1002/1615-9861(200103)1:3<377::AID-PROT377>3.0.CO;2-6, 11680884.
    • (2001) Proteomics , vol.1 , pp. 377-396
    • Tonge, R.1    Shaw, J.2    Middleton, B.3    Rowlinson, R.4    Rayner, S.5    Young, J.6    Pognan, F.7    Hawkins, E.8    Currie, I.9    Davison, M.10
  • 2
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • 10.1038/nature01511, 12634793
    • Aerbersold R, Mann M. Mass spectrometry-based proteomics. Nature 2003, 422:198-207. 10.1038/nature01511, 12634793.
    • (2003) Nature , vol.422 , pp. 198-207
    • Aerbersold, R.1    Mann, M.2
  • 5
    • 34547499407 scopus 로고    scopus 로고
    • Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases
    • 10.1073/pnas.0701622104, 1965519, 17563356
    • Smolka MB, Albuquerque CP, Chen S-H, Zhou H. Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases. Proc Natl Acad Sci USA 2007, 104:10364-10369. 10.1073/pnas.0701622104, 1965519, 17563356.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 10364-10369
    • Smolka, M.B.1    Albuquerque, C.P.2    Chen, S.-H.3    Zhou, H.4
  • 6
    • 27744468403 scopus 로고    scopus 로고
    • Proteomics of organelles and large cellular structure
    • 10.1038/nrm1711, 16231421
    • Yates JR, Gilchrist A, Howell KE, Bergeron JJ. Proteomics of organelles and large cellular structure. Nat Rev Mol Cell Biol 2005, 6:702-714. 10.1038/nrm1711, 16231421.
    • (2005) Nat Rev Mol Cell Biol , vol.6 , pp. 702-714
    • Yates, J.R.1    Gilchrist, A.2    Howell, K.E.3    Bergeron, J.J.4
  • 7
    • 33645704767 scopus 로고    scopus 로고
    • Quantitative proteomic comparison of rat mitochondria from muscle, heart, and liver
    • Forner F, Foster LJ, Campanaro S, Valle G, Mann M. Quantitative proteomic comparison of rat mitochondria from muscle, heart, and liver. Mol Cell Proteomics 2006, 5:608-619.
    • (2006) Mol Cell Proteomics , vol.5 , pp. 608-619
    • Forner, F.1    Foster, L.J.2    Campanaro, S.3    Valle, G.4    Mann, M.5
  • 8
    • 33749523582 scopus 로고    scopus 로고
    • Organellar proteomics: turning inventories into insights
    • Andersen J, Mann M. Organellar proteomics: turning inventories into insights. EMBO rep 2006, 9:874-879.
    • (2006) EMBO rep , vol.9 , pp. 874-879
    • Andersen, J.1    Mann, M.2
  • 10
    • 0021101032 scopus 로고
    • The organization of oligonucleosome in yeast
    • 10.1093/nar/11.11.3717, 325998, 6344013
    • Szent-Gyorgyi C, Isenberg I. The organization of oligonucleosome in yeast. Nucleic Acids Res 1983, 11:3717-3736. 10.1093/nar/11.11.3717, 325998, 6344013.
    • (1983) Nucleic Acids Res , vol.11 , pp. 3717-3736
    • Szent-Gyorgyi, C.1    Isenberg, I.2
  • 11
    • 0031455421 scopus 로고    scopus 로고
    • Persistent inhibition of DNA replication and chromatin-bound MCM proteins during the cell cycle in cdc6 mutants
    • 10.1101/gad.11.24.3375, 316796, 9407030
    • Liang C, Stillman B. Persistent inhibition of DNA replication and chromatin-bound MCM proteins during the cell cycle in cdc6 mutants. Genes Dev 1997, 11:3375-3386. 10.1101/gad.11.24.3375, 316796, 9407030.
    • (1997) Genes Dev , vol.11 , pp. 3375-3386
    • Liang, C.1    Stillman, B.2
  • 12
    • 44349105240 scopus 로고    scopus 로고
    • Temporal profiling of the chromatin proteome reveals system-wide responses to replication inhibition
    • 10.1016/j.cub.2008.04.075, 2440559,2440559, 18514518
    • Khoudoli GA, Gillespie PJ, Stewart G, Andersen JS, Swedlow JR, Blow JJ. Temporal profiling of the chromatin proteome reveals system-wide responses to replication inhibition. Curr Biol 2008, 18:838-843. 10.1016/j.cub.2008.04.075, 2440559,2440559, 18514518.
    • (2008) Curr Biol , vol.18 , pp. 838-843
    • Khoudoli, G.A.1    Gillespie, P.J.2    Stewart, G.3    Andersen, J.S.4    Swedlow, J.R.5    Blow, J.J.6
  • 13
    • 33748435627 scopus 로고    scopus 로고
    • Sperm chromatin proteomics identifies evolutionarily conserved fertility factors
    • 10.1038/nature05050, 2731558, 16943775
    • Chu DS, Liu H, Nix P, Wu TF, Ralston EJ, Yates JR, Meyer BJ. Sperm chromatin proteomics identifies evolutionarily conserved fertility factors. Nature 2006, 443:101-105. 10.1038/nature05050, 2731558, 16943775.
    • (2006) Nature , vol.443 , pp. 101-105
    • Chu, D.S.1    Liu, H.2    Nix, P.3    Wu, T.F.4    Ralston, E.J.5    Yates, J.R.6    Meyer, B.J.7
  • 14
    • 42649116833 scopus 로고    scopus 로고
    • Proteomics studies of brassinosteroid signal transduction using prefractionation and two-dimensional DIGE
    • 2401332, 18182375
    • Tang W, Deng Z, Oses-Prieto JA, Suzuki N, Zhu S, Zhang X, Burlingame AL, Wang ZY. Proteomics studies of brassinosteroid signal transduction using prefractionation and two-dimensional DIGE. Mol Cell Proteomics 2008, 7:728-738. 2401332, 18182375.
    • (2008) Mol Cell Proteomics , vol.7 , pp. 728-738
    • Tang, W.1    Deng, Z.2    Oses-Prieto, J.A.3    Suzuki, N.4    Zhu, S.5    Zhang, X.6    Burlingame, A.L.7    Wang, Z.Y.8
  • 15
    • 0036849072 scopus 로고    scopus 로고
    • Global approaches to chromatin
    • 10.1016/S1074-5521(02)00265-X, 12445767
    • Bernstein BE, Schreiber SL. Global approaches to chromatin. Chem Biol 2002, 9:1167-1173. 10.1016/S1074-5521(02)00265-X, 12445767.
    • (2002) Chem Biol , vol.9 , pp. 1167-1173
    • Bernstein, B.E.1    Schreiber, S.L.2
  • 16
    • 40549108563 scopus 로고    scopus 로고
    • Cell cycle regulation of DNA replication
    • 10.1146/annurev.genet.41.110306.130308, 2292467, 17630848
    • Sclafani RA, Holzen TM. Cell cycle regulation of DNA replication. Annu Rev Genet 2007, 41:237-280. 10.1146/annurev.genet.41.110306.130308, 2292467, 17630848.
    • (2007) Annu Rev Genet , vol.41 , pp. 237-280
    • Sclafani, R.A.1    Holzen, T.M.2
  • 17
    • 14544270984 scopus 로고    scopus 로고
    • Cyclin specificity in the phosphorylation of cyclin-dependent kinase substrates
    • 10.1038/nature03329, 15744308
    • Morgan DO, Loog M. Cyclin specificity in the phosphorylation of cyclin-dependent kinase substrates. Nature 2005, 434:104-108. 10.1038/nature03329, 15744308.
    • (2005) Nature , vol.434 , pp. 104-108
    • Morgan, D.O.1    Loog, M.2
  • 18
    • 3242889155 scopus 로고    scopus 로고
    • Interplay between chromatin and cell cycle checkpoints in the context of ATR/ATM-dependent checkpoints
    • 10.1016/j.dnarep.2004.03.010, 15279783
    • Koundrioukoff S, Polo S, Almouzni G. Interplay between chromatin and cell cycle checkpoints in the context of ATR/ATM-dependent checkpoints. DNA repair 2004, 3:969-978. 10.1016/j.dnarep.2004.03.010, 15279783.
    • (2004) DNA repair , vol.3 , pp. 969-978
    • Koundrioukoff, S.1    Polo, S.2    Almouzni, G.3
  • 19
    • 33751419716 scopus 로고    scopus 로고
    • Surviving the breakup: the DNA damage checkpoint
    • 10.1146/annurev.genet.40.051206.105231, 16805667
    • Harrison JC, Haber JE. Surviving the breakup: the DNA damage checkpoint. Annu Rev Genet 2006, 40:209-235. 10.1146/annurev.genet.40.051206.105231, 16805667.
    • (2006) Annu Rev Genet , vol.40 , pp. 209-235
    • Harrison, J.C.1    Haber, J.E.2
  • 20
    • 3442890774 scopus 로고    scopus 로고
    • Epigenetics and human disease
    • 10.1146/annurev.genom.5.061903.180014, 15485357
    • Jiang Y-H, Bressler J, Beaudet AL. Epigenetics and human disease. Annu Rev Genomics Hum Genet 2004, 5:479-510. 10.1146/annurev.genom.5.061903.180014, 15485357.
    • (2004) Annu Rev Genomics Hum Genet , vol.5 , pp. 479-510
    • Jiang, Y.-H.1    Bressler, J.2    Beaudet, A.L.3
  • 21
    • 0032171040 scopus 로고    scopus 로고
    • Chromatin remodeling: a marriage between two families
    • Pollard KJ, Peterson CL. Chromatin remodeling: a marriage between two families. Bioessay 1998, 20:771-780.
    • (1998) Bioessay , vol.20 , pp. 771-780
    • Pollard, K.J.1    Peterson, C.L.2
  • 22
    • 27744495770 scopus 로고    scopus 로고
    • Tilling the chromatin landscape: emerging methods for the discovery and profiling of protein DNA interactions
    • 10.1139/o05-055, 16094456
    • Rodriguez BAT, Huang TDM. Tilling the chromatin landscape: emerging methods for the discovery and profiling of protein DNA interactions. Biochem Cell Biol 2005, 83:525-534. 10.1139/o05-055, 16094456.
    • (2005) Biochem Cell Biol , vol.83 , pp. 525-534
    • Rodriguez, B.A.T.1    Huang, T.D.M.2
  • 23
    • 33745790132 scopus 로고    scopus 로고
    • Chromatin remodeling: the industrial revolution of DNA around histones
    • Saha A, Wittmeyer J, Cairns BR. Chromatin remodeling: the industrial revolution of DNA around histones. Nature Rev Mol Cell Biol 2006, 7:437-447.
    • (2006) Nature Rev Mol Cell Biol , vol.7 , pp. 437-447
    • Saha, A.1    Wittmeyer, J.2    Cairns, B.R.3
  • 24
    • 0027211046 scopus 로고
    • Interactions between three common subunits of yeast RNA polymerase I and III
    • 10.1073/pnas.90.12.5524, 46753, 8516295
    • Lalo D, Carles C, Sentenac A, Thuriaux P. Interactions between three common subunits of yeast RNA polymerase I and III. Proc Natl Acad Sci USA 1993, 90:5524-5528. 10.1073/pnas.90.12.5524, 46753, 8516295.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 5524-5528
    • Lalo, D.1    Carles, C.2    Sentenac, A.3    Thuriaux, P.4
  • 25
    • 0038532240 scopus 로고    scopus 로고
    • The tau95 subunit of yeast TFIIIC influences upstream and downstream functions of TFIIIC. DNA complexes
    • 10.1074/jbc.M213310200, 12533520
    • Jourdain S, Acker J, Ducrot C, Sentenac A, Lefebvre O. The tau95 subunit of yeast TFIIIC influences upstream and downstream functions of TFIIIC. DNA complexes. J Biol Chem 2003, 278:10450-10457. 10.1074/jbc.M213310200, 12533520.
    • (2003) J Biol Chem , vol.278 , pp. 10450-10457
    • Jourdain, S.1    Acker, J.2    Ducrot, C.3    Sentenac, A.4    Lefebvre, O.5
  • 26
    • 0034102424 scopus 로고    scopus 로고
    • The yeast STM1 gene encodes a purine motif triple helical DNA-binding protein
    • 10.1074/jbc.275.8.5573, 10681538
    • Nelson LD, Musso M, Van Dyke MW. The yeast STM1 gene encodes a purine motif triple helical DNA-binding protein. J Biol Chem 2000, 275:5573-5581. 10.1074/jbc.275.8.5573, 10681538.
    • (2000) J Biol Chem , vol.275 , pp. 5573-5581
    • Nelson, L.D.1    Musso, M.2    Van Dyke, M.W.3
  • 28
    • 0029791693 scopus 로고    scopus 로고
    • The 70 kDa subunit of replication protein A is required for the G1/S and intra-S DNA damage checkpoints in budding yeast
    • 10.1093/nar/24.18.3533, 146145, 8836179
    • Longhese MP, Neecke H, Paciotti V, Lucchini G, Plevani P. The 70 kDa subunit of replication protein A is required for the G1/S and intra-S DNA damage checkpoints in budding yeast. Nucleic Acids Res 1996, 24:3533-3537. 10.1093/nar/24.18.3533, 146145, 8836179.
    • (1996) Nucleic Acids Res , vol.24 , pp. 3533-3537
    • Longhese, M.P.1    Neecke, H.2    Paciotti, V.3    Lucchini, G.4    Plevani, P.5
  • 29
    • 0031960691 scopus 로고    scopus 로고
    • Genetic analysis of yeast RPA1 reveals its multiple functions in DNA metabolism
    • 1460019, 9539419
    • Umezu K, Sugawara N, Chen C, Haber JE, Kolodner RD. Genetic analysis of yeast RPA1 reveals its multiple functions in DNA metabolism. Genetics 1998, 148:989-1005. 1460019, 9539419.
    • (1998) Genetics , vol.148 , pp. 989-1005
    • Umezu, K.1    Sugawara, N.2    Chen, C.3    Haber, J.E.4    Kolodner, R.D.5
  • 30
    • 0029597799 scopus 로고
    • Mutations in the gene encoding the 34 kDa subunit of yeast replication protein A cause defective S phase progression
    • 10.1006/jmbi.1995.0641, 7500336
    • Santocanale C, Neecke H, Longhese MP, Lucchini G, Plevani P. Mutations in the gene encoding the 34 kDa subunit of yeast replication protein A cause defective S phase progression. J Mol Biol 1995, 254:595-607. 10.1006/jmbi.1995.0641, 7500336.
    • (1995) J Mol Biol , vol.254 , pp. 595-607
    • Santocanale, C.1    Neecke, H.2    Longhese, M.P.3    Lucchini, G.4    Plevani, P.5
  • 31
    • 0030813561 scopus 로고    scopus 로고
    • Identification of RNR4, encoding a second essential small subunit of ribonucleotide reductase in Saccharomyces cerevisiae
    • 232460, 9315670
    • Huang M, Elledge SJ. Identification of RNR4, encoding a second essential small subunit of ribonucleotide reductase in Saccharomyces cerevisiae. Mol Cell Biol 1997, 17:6105-6113. 232460, 9315670.
    • (1997) Mol Cell Biol , vol.17 , pp. 6105-6113
    • Huang, M.1    Elledge, S.J.2
  • 32
    • 0038312250 scopus 로고    scopus 로고
    • Subcellular localization of yeast ribonucleotide reductase regulated by the DNA replication and damage checkpoint pathways
    • 10.1073/pnas.1131932100, 164498, 12732713
    • Yao R, Zhang Z, An X, Bucci B, Perlstein DL, Stubble J, Huang M. Subcellular localization of yeast ribonucleotide reductase regulated by the DNA replication and damage checkpoint pathways. Proc Natl Acad Sci USA 2003, 100:6628-6633. 10.1073/pnas.1131932100, 164498, 12732713.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 6628-6633
    • Yao, R.1    Zhang, Z.2    An, X.3    Bucci, B.4    Perlstein, D.L.5    Stubble, J.6    Huang, M.7
  • 33
    • 33847296214 scopus 로고    scopus 로고
    • The Saccharomyces cerevisiae 14-3-3 proteins Bmh1 and Bmh2 directly influence the DNA damage-dependent functions of Rad53
    • Usui T, Petrini JHJ. The Saccharomyces cerevisiae 14-3-3 proteins Bmh1 and Bmh2 directly influence the DNA damage-dependent functions of Rad53. Proc Natl Acad Sci USA 2003, 104:2797-2802.
    • (2003) Proc Natl Acad Sci USA , vol.104 , pp. 2797-2802
    • Usui, T.1    Petrini, J.H.J.2
  • 34
    • 33846443975 scopus 로고    scopus 로고
    • Genomic screening in vivo reveals the role played by vacuolar H+ ATPase and cytosolic acidification in sensitivity to DNA-damaging agents such as cisplatin
    • 10.1124/mol.106.030494, 17093137
    • Liao C, Hu B, Arno MJ, Panaretou B. Genomic screening in vivo reveals the role played by vacuolar H+ ATPase and cytosolic acidification in sensitivity to DNA-damaging agents such as cisplatin. Mol Pharmacol 2006, 71:416-425. 10.1124/mol.106.030494, 17093137.
    • (2006) Mol Pharmacol , vol.71 , pp. 416-425
    • Liao, C.1    Hu, B.2    Arno, M.J.3    Panaretou, B.4
  • 35
    • 0036463655 scopus 로고    scopus 로고
    • Gcn4p, a master regulator of gene expression, is controlled at multiple levels by diverse signals of starvation and stress
    • 10.1128/EC.01.1.22-32.2002, 118051, 12455968
    • Hinnebusch AG, Natarajan K. Gcn4p, a master regulator of gene expression, is controlled at multiple levels by diverse signals of starvation and stress. Eukaryot Cell 2002, 1:22-32. 10.1128/EC.01.1.22-32.2002, 118051, 12455968.
    • (2002) Eukaryot Cell , vol.1 , pp. 22-32
    • Hinnebusch, A.G.1    Natarajan, K.2
  • 36
    • 0022569777 scopus 로고
    • Inhibition of DNA polymerase activity by methyl methanesulfonate
    • Norman JO, Joe CO, Busbee DL. Inhibition of DNA polymerase activity by methyl methanesulfonate. Mutat Res 1986, 165:71-79.
    • (1986) Mutat Res , vol.165 , pp. 71-79
    • Norman, J.O.1    Joe, C.O.2    Busbee, D.L.3
  • 37
    • 0029991081 scopus 로고    scopus 로고
    • Inhibition of the phosphorylation of a myristoylated alanine-rich C kinase substrate by methyl methanesulfonate in cultured NIH 3T3 cells
    • Shin I, Kam Y, Ha K, Kang K, Joe CO. Inhibition of the phosphorylation of a myristoylated alanine-rich C kinase substrate by methyl methanesulfonate in cultured NIH 3T3 cells. Mutat Res 1996, 351:163-171.
    • (1996) Mutat Res , vol.351 , pp. 163-171
    • Shin, I.1    Kam, Y.2    Ha, K.3    Kang, K.4    Joe, C.O.5
  • 38
    • 0037172948 scopus 로고    scopus 로고
    • Transcriptional response of Saccharomyces cerevisiae to DNA-damaging agents does not identify the genes that protect against these agents
    • 10.1073/pnas.132275199, 124375, 12077312
    • Birrell GW, Brown JA, Wu HI, Giaever G, Chu AM, Davis RW, Brown JM. Transcriptional response of Saccharomyces cerevisiae to DNA-damaging agents does not identify the genes that protect against these agents. Proc Natl Acad Sci USA 2002, 99:8778-8783. 10.1073/pnas.132275199, 124375, 12077312.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 8778-8783
    • Birrell, G.W.1    Brown, J.A.2    Wu, H.I.3    Giaever, G.4    Chu, A.M.5    Davis, R.W.6    Brown, J.M.7
  • 40
    • 23844512811 scopus 로고    scopus 로고
    • A mutation in Dbf4 motif M impairs interactions with DNA replication factors and confers increased resistance to genotoxic agents
    • Varrin AE, Prasad AA, Scholz R-P, Ramer MD, Duncker BP. A mutation in Dbf4 motif M impairs interactions with DNA replication factors and confers increased resistance to genotoxic agents. Mol Cell Biol 205, 25:7494-7504.
    • Mol Cell Biol , vol.205 , Issue.25 , pp. 7494-7504
    • Varrin, A.E.1    Prasad, A.A.2    Scholz, R.-P.3    Ramer, M.D.4    Duncker, B.P.5
  • 41
    • 0036679130 scopus 로고    scopus 로고
    • Previously uncharacterized genes in the UV- and MMS-induced DNA damage response in yeast
    • 10.1073/pnas.152264899, 124988, 12149442
    • Hanway D, Chin JK, Xia G, Oshiro G, Winzeler EA, Romesberg FE. Previously uncharacterized genes in the UV- and MMS-induced DNA damage response in yeast. Proc Natl Acad Sci USA 2002, 99:10605-10610. 10.1073/pnas.152264899, 124988, 12149442.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 10605-10610
    • Hanway, D.1    Chin, J.K.2    Xia, G.3    Oshiro, G.4    Winzeler, E.A.5    Romesberg, F.E.6
  • 42
    • 0032497529 scopus 로고    scopus 로고
    • A Mec1- and Rad53-dependent checkpoint controls late-firing origins of DNA replication
    • 10.1038/27001, 9783589
    • Santocanale C, Diffley JFX. A Mec1- and Rad53-dependent checkpoint controls late-firing origins of DNA replication. Nature 1998, 395:615-618. 10.1038/27001, 9783589.
    • (1998) Nature , vol.395 , pp. 615-618
    • Santocanale, C.1    Diffley, J.F.X.2
  • 43
    • 0035096793 scopus 로고    scopus 로고
    • Mutations in the YRB1 gene encoding yeast Ran-binding-protein-1 that impair nucelocytoplasmic transport and suppress yeast mating defects
    • 1461573, 11238397
    • Künzler M, Trueheart J, Sette C, Hurt E, Thorner J. Mutations in the YRB1 gene encoding yeast Ran-binding-protein-1 that impair nucelocytoplasmic transport and suppress yeast mating defects. Genetics 2001, 157:1089-1105. 1461573, 11238397.
    • (2001) Genetics , vol.157 , pp. 1089-1105
    • Künzler, M.1    Trueheart, J.2    Sette, C.3    Hurt, E.4    Thorner, J.5
  • 44
    • 33644524918 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics turns quantitative
    • 10.1038/nchembio736, 16408053
    • Ong S-E, Mann M. Mass spectrometry-based proteomics turns quantitative. Nat Chem Biol 2005, 1:252-262. 10.1038/nchembio736, 16408053.
    • (2005) Nat Chem Biol , vol.1 , pp. 252-262
    • Ong, S.-E.1    Mann, M.2
  • 45
    • 0035162698 scopus 로고    scopus 로고
    • Genomic expression response to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p
    • 60150, 11598186
    • Gasch AP, Huang M, Metzner S, Botstein D, Elledge SJ, Brown PO. Genomic expression response to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p. Mol Biol Cell 2001, 12:2987-3003. 60150, 11598186.
    • (2001) Mol Biol Cell , vol.12 , pp. 2987-3003
    • Gasch, A.P.1    Huang, M.2    Metzner, S.3    Botstein, D.4    Elledge, S.J.5    Brown, P.O.6
  • 46
    • 0036923370 scopus 로고    scopus 로고
    • Damage recovery pathways in Saccharomyces cerevisiae revealed by genomic phenotyping and interactome mapping
    • Begley TJ, Rosenbach AS, Ideker T, Samson LD. Damage recovery pathways in Saccharomyces cerevisiae revealed by genomic phenotyping and interactome mapping. Mol Cancer Res 2002, 1:103-112.
    • (2002) Mol Cancer Res , vol.1 , pp. 103-112
    • Begley, T.J.1    Rosenbach, A.S.2    Ideker, T.3    Samson, L.D.4
  • 47
    • 36248953763 scopus 로고    scopus 로고
    • Impaired tRNA nuclear export links DNA damage and cell-cycle checkpoint
    • 10.1016/j.cell.2007.09.042, 18045534
    • Ghavidel A, Kislinger T, Pogoutse O, Sopko R, Jurisica I, Emili A. Impaired tRNA nuclear export links DNA damage and cell-cycle checkpoint. Cell 2007, 131:915-926. 10.1016/j.cell.2007.09.042, 18045534.
    • (2007) Cell , vol.131 , pp. 915-926
    • Ghavidel, A.1    Kislinger, T.2    Pogoutse, O.3    Sopko, R.4    Jurisica, I.5    Emili, A.6
  • 48
    • 34548409217 scopus 로고    scopus 로고
    • Experimental and statistical considerations to avoid false conclusions in proteomics studies using differential in-gel electrophoresis
    • 10.1074/mcp.M600274-MCP200, 17513293
    • Karp NA, McCormick PS, Russell MR, Lilley KS. Experimental and statistical considerations to avoid false conclusions in proteomics studies using differential in-gel electrophoresis. Mol Cell Proteomics 2007, 6:1354-1364. 10.1074/mcp.M600274-MCP200, 17513293.
    • (2007) Mol Cell Proteomics , vol.6 , pp. 1354-1364
    • Karp, N.A.1    McCormick, P.S.2    Russell, M.R.3    Lilley, K.S.4
  • 49
    • 0142151385 scopus 로고    scopus 로고
    • Overcoming technical variation and biological variation in quantitative proteomics
    • 10.1002/pmic.200300534, 14625853
    • Molloy MP, Brzezinski EE, Hang J, McDowell MT, VanBogelen RA. Overcoming technical variation and biological variation in quantitative proteomics. Proteomics 2003, 3:1912-1919. 10.1002/pmic.200300534, 14625853.
    • (2003) Proteomics , vol.3 , pp. 1912-1919
    • Molloy, M.P.1    Brzezinski, E.E.2    Hang, J.3    McDowell, M.T.4    VanBogelen, R.A.5
  • 50
    • 84965179011 scopus 로고    scopus 로고
    • R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing
    • Team RDC
    • Team RDC R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing. Team RDC., http://www.r-project.org
  • 52
    • 34748910605 scopus 로고    scopus 로고
    • Sample preparation by in-gel digestion for mass spectrometry-based proteomics
    • 10.1007/s00216-007-1451-4, 17639354
    • Granvogl B, Plöcher M, Eichacker LA. Sample preparation by in-gel digestion for mass spectrometry-based proteomics. Anal Bioanal Chem 2007, 389:991-1002. 10.1007/s00216-007-1451-4, 17639354.
    • (2007) Anal Bioanal Chem , vol.389 , pp. 991-1002
    • Granvogl, B.1    Plöcher, M.2    Eichacker, L.A.3
  • 53
    • 15344345840 scopus 로고    scopus 로고
    • An effective algorithm for peptide de novo sequencing from MS/MS spectra
    • Ma B, Zhang K, Liang C. An effective algorithm for peptide de novo sequencing from MS/MS spectra. J Comput System Sci 2005, 70:418-430.
    • (2005) J Comput System Sci , vol.70 , pp. 418-430
    • Ma, B.1    Zhang, K.2    Liang, C.3
  • 54
    • 34147105329 scopus 로고    scopus 로고
    • A novel role of the actin-nucleating Arp2/3 complex in the regulation of RNA polymerase II-dependent transcription
    • Yoo YD, Xu X, Guan J-L. A novel role of the actin-nucleating Arp2/3 complex in the regulation of RNA polymerase II-dependent transcription. J Biol Chem 2006, 282:7616-7623.
    • (2006) J Biol Chem , vol.282 , pp. 7616-7623
    • Yoo, Y.D.1    Xu, X.2    Guan, J.-L.3
  • 55
    • 0034897016 scopus 로고    scopus 로고
    • Evidence for a nuclear passage of nascent polypeptide-associated complex subunits in yeast
    • Franke J, Reimann B, Hartmann E, Köhlerl M, Wiedmann B. Evidence for a nuclear passage of nascent polypeptide-associated complex subunits in yeast. J Cell Sci 2001, 114:2641-2648.
    • (2001) J Cell Sci , vol.114 , pp. 2641-2648
    • Franke, J.1    Reimann, B.2    Hartmann, E.3    Köhlerl, M.4    Wiedmann, B.5
  • 56
    • 33748885242 scopus 로고    scopus 로고
    • Different mating-type-regulated genes affect the DNA repair defects of Saccharomyces Rad51, Rad52 and Rad55 mutants
    • 10.1534/genetics.106.058685, 1569815, 16782999
    • Valencia-Burton M, Oki M, Johnson J, Seier TA, Kamakaka R, Haber JE. Different mating-type-regulated genes affect the DNA repair defects of Saccharomyces Rad51, Rad52 and Rad55 mutants. Genetics 2006, 174:41-55. 10.1534/genetics.106.058685, 1569815, 16782999.
    • (2006) Genetics , vol.174 , pp. 41-55
    • Valencia-Burton, M.1    Oki, M.2    Johnson, J.3    Seier, T.A.4    Kamakaka, R.5    Haber, J.E.6
  • 57
    • 0023661340 scopus 로고
    • Antagonistic controls regulate copy number of the yeast mu plasmid
    • 553905, 2832156
    • Murray JA, Scarpa M, Rossi N, Cesareni G. Antagonistic controls regulate copy number of the yeast mu plasmid. EMBO J 1987, 6:4205-4212. 553905, 2832156.
    • (1987) EMBO J , vol.6 , pp. 4205-4212
    • Murray, J.A.1    Scarpa, M.2    Rossi, N.3    Cesareni, G.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.