The yeast STM1 gene encodes a purine motif triple helical DNA-binding protein

Journal of Biological Chemistry

Volumn 275, Issue 8, 2000, Pages 5573-5581

  Nelson, Laura D ^a   Musso, Marco ^a,b   Van Dyke, Michael W ^a  

^a UNIVERSITY OF TEXAS MD ANDERSON CANCER CENTER   (United States)

^b UNIVERSITY OF GENOA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; NUCLEIC ACID; NUCLEIC ACID BINDING PROTEIN; PURINE;

AMINO ACID SEQUENCE; ARTICLE; DNA SEQUENCE; ELECTROPHORETIC MOBILITY; GENE MUTATION; GENE REPLICATION; GENETIC TRANSCRIPTION; HYDROGEN BOND; MITOSIS; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN CONFORMATION; SACCHAROMYCES CEREVISIAE; YEAST;

ARGININE; BINDING, COMPETITIVE; DNA; DNA-BINDING PROTEINS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; FUNGAL PROTEINS; KINETICS; LYSINE; MODELS, GENETIC; PEPTIDE INITIATION FACTORS; PURINES; RECOMBINANT PROTEINS; RNA NUCLEOTIDYLTRANSFERASES; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS;

EID: 0034102424     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.275.8.5573     Document Type: Article

References (69)

1. Felsenfeld, G., Davies, D. R., and Rich, A. (1957) J. Am. Chem. Soc. 79, 2023-2024
2. Frank-Kamenetskii, M. D., and Mirkin, S. M. (1995) Annu. Rev. Biochem. 64, 65-95
3. Singleton, S. F., and Dervan, P. B. (1992) Biochemistry 31, 10995-11003
4. Beal, P. A., and Dervan, P. B. (1992) Nucleic Acids Res. 20, 2773-2776
5. Behe, M. (1995) Nucleic Acids Res. 23, 689-695
6. Wells, R. D., Collier, D. A., Hanvey, J. C., Shimizu, M., and Wohlrab, F. (1988) FASEB J. 2, 2939-2949
7. Boulikas, T. (1996) J. Cell. Biochem. 60, 297-316
8. Kohwi, Y., and Kohwi-Sigamatsu, T. (1991) Genes Dev. 5, 2547-2554
9. Chen, S., Supakar, P. C., Vellanoweth, R. L., Song, C. S., Chatterjee, B., and Roy, A. K. (1997) Mol. Endocrinol. 11, 3-15
10. Bianchi, A., Wells, R. D., Heintz, N. H., and Caddle, M. S. (1990) J. Biol. Chem. 265, 21789-21796
11. Baran, N., Lapidot, A., and Manor, H. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 507-511
12. Kohwi, Y., and Panchenko, Y. (1993) Genes Dev. 7, 1766-1778
13. Rooney, S., and Moore, P. D. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 2141-2144
14. Burkholder, G. D., Latimer, L. J. P., and Lee, J. S. (1988) Chromosoma (Berl.) 97, 185-192
15. Burkholder, G. D., Latimer, L. J. P., and Lee, J. S. (1991) Chromosoma (Berl.) 101, 11-18
16. Kiyama, R., and Camerini-Otero, R. D. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 10450-10454
17. Guieysse, A.-L., Praseuth, D., and Hélène, C. (1997) J. Mol. Biol. 267, 289-298
18. Musso, M., Nelson, L. D., and Van Dyke, M. W. (1998) Biochemistry 37, 3086-3095
19. Jiménez-García, E., Vaquero, A., Espinás, M. L., Soliva, R., Orozco, M., Bernués, J., and Azorín, F. (1998) J. Biol. Chem. 273, 24640-24648
20. Goffeau, A., Barrell, B. G., Bussey, H., Davis, R. W., Dujon, B., Feldmann, H., Galibert, F., Hoheisel, J. D., Jacq, C., Johnston, M., Louis, E. J., Mewes, H. W., Murakami, Y., Philippsen, P., Tettelin, H., and Oliver, S. G. (1996) Science 274, 563-567
21. Hodges, P. E., McKee, A. H., Davis, B. P., Payne, W. E., and Garrels, J. I. (1999) Nucleic Acids Res. 27, 69-73
22. Sawadogo, M., and Van Dyke, M. W. (1991) Nucleic Acids Res. 19, 674
23. Musso, M., and Van Dyke, M. W. (1995) Nucleic Acids Res. 23, 2320-2327
24. Musso, M., Wang, J. C., and Van Dyke, M. W. (1996) Nucleic Acids Res. 24, 4924-4932
25. Sen, D., and Gilbert, W. (1992) Methods Enzymol. 211, 191-199
26. Cheng, A.-J., and Van Dyke, M. W. (1997) Gene (Amst. ) 197, 253-260
27. Cheng, A.-J., Wang, J. C., and Van Dyke, M. W. (1998) Antisense Nucleic Acid Drug Dev. 8, 215-225
28. Dunn, B., and Wobbe, C. R. (1990) in Current Protocols in Molecular Biology (Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A., and Struhl, K., eds.) pp. 13.13.1-13.13.9, Wiley-Interscience, New York
29. Van Dyke, M. W., Sirito, M., and Sawadogo, M. (1992) Gene (Amst.) 111, 99-104
30. Utsugi T., Toh-e, A., and Kikuchi, Y. (1995) Biochim. Biophys. Acta 1263, 285-288
31. Cheng, A.-J., and Van Dyke, M. W. (1993) Nucleic Acids Res. 21, 5630-5635
32. Cottrelle, P., Thiele, D., Price, V. L., Memet, S., Micouin, J. Y., Marck, C., Buhler, J.-M., Sentenac, A., and Fromageot, P. (1985) J. Biol. Chem. 260, 3090-3096
33. Lavasani, S., Henriksson, G., Brant, M., Henriksson, A., Radulic, M., Manthorpe, R., and Bredberg, A. (1998) J. Autoimmun. 11, 363-369
34. Waga, S., and Stillman, B. (1998) Annu. Rev. Biochem. 67, 721-751
35. Hata, H., Mitsui, H., Liu, H., Bai, Y., Denis, C. L., Shimizu, Y., and Sakai, A. (1998) Genetics 148, 571-579
36. Frantz, J. D., and Gilbert, W. (1995) J. Biol. Chem. 270, 9413-9419
37. Saleh, A., Collart, M., Martens, J. A., Genereaux, J., Allard, S., Cote, J., and Brandi, C. J. (1998) J. Mol. Biol. 282, 933-946
38. Liu, H. Y., Toyn, J. H., Chiang, Y. C., Draper, M. P., Johnston, L. H., and Denis, C. L. (1997) EMBO J. 16, 5289-5298
39. Kikuchi, Y., Oka, Y., Kobayasbi, M., Uesono, Y., Toh-e, A., and Kikuchi, A. (1994) Mol. Gen. Genet. 245, 107-116
40. Sinclair, D., Mills, K., and Guarente, L. (1998) Annu. Rev. Microbiol. 52, 533-560
41. Velculescu, V. E., Zhang, L., Zhou, W., Vogelstein, J., Basrai, M. A., Bassett, D. E. Jr., Hieter, P., Vogelstein, B., and Kinzler, K. W. (1997) Cell 88, 243-251
42. Cho, R. J., Campbell, M. J., Winzeler, E. A., Steinmetz, L., Conway, A., Wodicka, L., Wolfsberg, T. G., Gabrielian, A. E., Landsman, D., Lockhart, D. J., and Davis, R. W. (1998) Mol. Cell 2, 65-73
43. Roth, F. P., Hughes, J. D., Estep, P. W., and Church, G. M. (1998) Nature Biotechnol. 16, 939-945
44. Jelinsky, S. A., and Samson, L. D. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 1486-1491
45. DeRisi, J. L., Iyer, V. R., and Brown, P. O. (1997) Science 278, 680-686
46. Chu, S., DeRisi, J., Eisen, M., Mulholland, J., Botstein, D., Brown, P. O., and Herskowitz, I. (1998) Science 282, 699-705
47. Zhu, J., and Zhang, M. Q. (1999) Bioinformatics 15, 607-611
48. Sancar, G. B., Ferris, R., Smith, F W., and Vandeberg, B. (1995) Nucleic Acids Res. 23, 4320-4328
49. Meluh, P. B., and Koshland, D. (1997) Genes Dev. 11, 3401-3412
50. Williamson, J. R. (1994) Annu. Rev. Biophys. Biomol. Struct. 23, 703-730
51. Liu, Z., Frantz, J. D., Gilbert, W., and Tye, B. K. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 3157-3161
52. Maidak, B. L., Larsen, N., McCaughey, M. J., Overbeek, R., Olsen, G. J., Fogel, K., Blandy, J., and Woese, C. R. (1994) Nucleic Acids Res. 22, 3485-3487
53. Simos, G., Segref, A., Fasiolo, F., Hellmuth, K., Shevchenko, A., Mann, M., and Hurt, E. C. (1996) EMBO J. 15, 5437-5448
54. Frantz, J. D., and Gilbert, W. (1995) J. Biol. Chem. 270, 20692-20697
55. Huang, S., Elliott, R. C., Liu, P. S., Koduri, R. K., Weicfcmann, J. L., Lee, J. H., Blair, L. C., Ghosh-Dastidar, P., Bradshaw, R. A., Bryan, K. M., Einarson, B., Kendall, R. L., Kolacz, K. H., and Saito, K. (1987) Biochemistry 26, 8242-3246
56. Brendel, V., Bucher, P., Nourbakhsh, I., Blaisdell, B. E., and Karlin, S. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 2002-2006
57. Potaman, V. N., and Sinden, R. R. (1995) Biochemistry 34, 14885-14892
58. Potaman, V. N., and Sinden, R. R. (1998) Biochemistry 37, 12952-12961
59. Hicks, G. R., and Raikhel, N. V. (1995) Annu. Rev. Cell Dev. Biol. 11, 155-187
60. Lupas, A. (1997) Curr. Opin. Struct. Biol. 7, 388-393
61. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990) J. Mol. Biol. 215, 403-410
62. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402
63. Wilkins, R. C., and Lis, J. T. (1997) Nucleic Acids Res. 25, 3963-3968
64. Platero, J. S., Csink, A. K., Quintanilla, A., and Henikoff, S. (1998) J. Cell Biol. 140, 1297-1306
65. Bhat, K. M., Farkas, G., Karch, F., Gyurkovics, H., Gausz, J., and Schedl, P. (1996) Development 122, 1113-1124
66. Foreman, P. K., and Davis, R. W. (1996) Genetics 144, 1387-1397
67. Koch, C., Wollmann, P., Dahl, M., and Lottspeich, F. (1999) Nucleic Acids Res. 27, 2126-2134
68. Shi, X., Finkelstein, A., Wolf, A. J., Wade, P. A., Burton, Z. F., and Jaehning, J. A. (1996) Mol. Celt. Biol. 16, 669-676
69. Agazie, Y. M., Burkholder, G. D., and Lee, J. S. (1996) Biochem. J. 316, 461-466