Chromatin remodeling: A marriage between two families?

BioEssays

Volumn 20, Issue 9, 1998, Pages 771-780

  Pollard, Kerri J ^a   Peterson, Craig L ^a  

^a UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMATIN; DNA RECOMBINATION; DNA REPAIR; DNA TEMPLATE; GENOME; HISTONE ACETYLTRANSFERASE;

ACETYLATION; ACETYLTRANSFERASES; ADENOSINE TRIPHOSPHATASES; ANIMALS; CHROMATIN; CHROMOSOMAL PROTEINS, NON-HISTONE; DNA HELICASES; DNA-BINDING PROTEINS; FUNGAL PROTEINS; GENE EXPRESSION REGULATION; HISTONE ACETYLTRANSFERASES; HISTONES; HUMANS; MACROMOLECULAR SUBSTANCES; MODELS, GENETIC; MULTIENZYME COMPLEXES; MULTIGENE FAMILY; NUCLEAR PROTEINS; NUCLEOSOMES; PROTEIN PROCESSING, POST-TRANSLATIONAL; SACCHAROMYCES CEREVISIAE PROTEINS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EUKARYOTA;

EID: 0032171040     PISSN: 02659247     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1521-1878(199809)20:9<771::AID-BIES10>3.0.CO;2-V     Document Type: Article

References (68)

1. Belmont AS, Bruce K (1994) Visualization of G1 chromosomes: A folded twisted supercoiled chromonema model of interphase chromatid structure. J Cell Biol 127:287-302.
2. Belmont AS, Braunfeld MB, Sedat JW, Agard DA (1989) Large-scale chromatin structural domains within mitotic and interphase chromosomes in vivo and in vitro. Chromosoma 98:129-143.
3. Eisen JA, Sweder KS, Hanawalt PC (1995) Evolution of the SNF2 family of proteins: Subfamilies with distinct sequences and functions. Nucleic Acids Res 23:2715-2723.
4. Cairns BR, Lorch Y, Li Y, Zhang M, Lacomis L, Erdjument-Bromage H, Tempst P, Du J, Laurent B, Kornberg R (1996) RSC, an essential, abundant chromatin-remodeling complex. Cell 87: 1249-1260.
5. Ito T, Bulger M, Pazin MJ, Kobayashi R, Kadonaga JT (1997) ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor. Cell 90:145-155.
6. Varga-Weisz PD, Wilm M, Bonte E, Dumas K, Mann M, Becker PB (1997) Chromatin-remodeling factor CHRAC contains the ATPases ISWI and topoisomerase II. Nature 388:598-602.
7. Burn LG, Peterson CL (1997) Protein complexes for remodeling chromatin. Biochim Biophys Acta 1350:159-168.
8. Tsukiyama T, Daniel C, Tamkun J, Wu C (1995) ISWI, a member of the SWI2/SNF2 ATPase family, encodes the 140 kDa subunit of the nucleosome remodeling factor. Cell 83:1021-1026.
9. Tsukamoto Y, Kato J, Ikeda H (1997) Silencing factors participate in DNA repair and recombination in Saccharomyces cerevisiae. Nature 388:900-903.
10. Peterson CL (1996) Multiple SWItches to turn on chromatin? Curr Opin Gen and Dev 6:171-175.
11. Fletcher TM, Hansen JC (1996) The nucleosomal array: Structure/ function relationships. Crit Rev Eukaryote Gene Expr 6:149-188.
12. Hansen JC (1997) The core histone amino-termini: Combinatorial interaction domains that link chromatin structure with function. ChemTracts Biochem Mol Biol(In press).
13. Carlson M, Laurent BC (1994) The SNF/SWI family of global transcriptional activators. Curr Opin Cell Biol 6:396-402.
14. Henikoff S (1993) Transcriptional activator components and poxvirus DNA-dependent ATPases comprise a single family. TIBS 18:291-292.
15. Zhang Z, Buchman AR (1997) Identification of a member of a DNA-dependent ATPase family that causes interference with silencing. Mol Cell Biol 17:5461-5472.
16. Woodage T, Basrai MA, Baxevanis AD, Hieter P, Collins FS (1997) Characterization of the CHD family of proteins. Proc Natl Acad Sci USA 94:11472-11477.
17. Winston F, Carlson M (1992) Yeast SNF/SWI transcriptional activators and the SPT/SIN chromatin connection. TIG 8:387-391.
18. Lefebvre L, Smith M (1993) Mutational and functional analysis of dominant SPT2 (SIN1) suppressor alleles in Saccharomyces cerevisiae. Mol Cell Biol 13:5393-5407.
19. Kruger W, Peterson CL, A Sil, Coburn C, Arents G, Moundrianakis EN, Herskowitz I (1995) Amino acid substitutions in the structured domains of histones H3 and H4 partially relieve the requirement of the yeast SWI/SNF complex for transcription. Genes Dev 9:2770-2779.
20. Cote J, Quinn J, Workman J, Peterson CL (1994) Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF protein complex. Science 265:53-60.
21. Logie C, Peterson CL (1997) Catalytic activity of the yeast SWI/SNF complex on reconstituted nucleosome arrays. EMBO J 16:6772-6782.
22. Owen-Hughes T, Utley RT, Cote J, Peterson CL, Workman JL (1996) Persistent site-specific remodeling of a nucleosome array by transient action of the SWI/SNF complex. Science 273:513-516.
23. Hirschhorn JN, Brown SA, Clark CD, Winston F (1992) Evidence that SNF2/SWI2 and SNF5 activates transcription in yeast by altering chromatin structure. Genes Dev 6:2288-2298.
24. Burns L, Peterson CL (1997) Yeast SWI/SNF complex facilitates the binding of a transcriptional activator to nucleosomal sites in vivo. Mol Cell Biol 17:4811-4819.
25. Dingwall AK, Beed SJ, McCallum CM, Tamkun JW, Kaplana GV, Goff SP, Scott M (1995) The Drosophila snr1 and brm proteins are related to yeast SWI/SNF proteins and are components of a large protein complex. Mol Cell Biol 6:777-791.
26. Elfring LK, Daniel C, Papoulas O, Deuring R, Sarte M, Moseley S, Beek SJ, Waldrip WR, Daubresse G, DePace A, Kennison JA, Tamkun JW (1997) Genetic analysis of brahma (brm): The Drosophila homolog of the yeast chromatin remodelin factor SWI2/SNF2. Genetics (in press).
27. Sumi-Ichinose C, Ichinose H, Metzger D, Chambon P (1997) SNF2beta-BRG1 is essential for the viability of F9 murine embryonal carcinoma cells. Mol Cell Biol 17:5976-5986.
28. Chiba H, Muramatsu M, Nomoto A, Kato H (1994) Two human homologues of Saccharomyces cerevisiae SWI2/SNF2 and Drosophila brahma are transcriptional coactivators cooperating with the estrogen receptor and the retinoic acid receptor. Nucleic Acids Res 22:1815-1820.
29. Muchardt C, Yaniv M (1993) A human homologue of Saccharomyces cerevisiae SNF2/SWI2 and Drosophila brm genes potentiates transcriptional activation by the glucocorticoid receptor. EMBO J 12:4279-4290.
30. Dunaief JL, Strober BE, Guha S, Khavari PA, Alin K, Iuban J, Begemann M, Crabtree GR, Goff SP (1994) The retinoblastoma protein and BRG1 form a complex and cooperate to induce cell cycle arrest. Cell 79:119-130.
31. Brownell JE, Zhou J, Ranalli T, Kobayashi R, Edmonson DG, Roth SY, Allis CD (1996) Tetrahymena histone acetyltransferase a: A homolog to yeast GcnSp linking histone acetylation to gene activation. Cell 84:843-851.
32. Spencer TE, Jenster G, Burcin MM, Allis CD, Zhou J, Mizzen CA, McKenna NJ, Onate SA, Tsai SY, Tsai MJ, O'Malley BW (1997) Steroid receptor coactivator-1 is a histone acetyltransferase. Nature 389:194-1998.
33. Chen H, Lin RJ, Schlitz RL, Chakravarti D, Nash A, Nagy L, Privalsky ML, Nakatani Y, Evans RM (1997) Nuclear receptor coactivator ACTR is a novel histone acetyltransferase and forms a multimeric activation complex with P/CAF and CBP/p300. Cell 90:569-580.
34. Ogryzko VV, Schlitz RL, Russanova V, Howard BH, Nakatani Y (1996) The transcriptional coactivators p300 and CBP are histone acetyltransferases. Cell 87:953-959.
35. Bannister AJ, Kouzarides T (1996) The CBP co-activator is a histone acetyltransferase. Nature 384:641-643.
36. Mizzen CA, Yang XJ, Kokubo T, Brownell JE, Bannister AJ, Owen-Hughes T, Workman J, Wang L, Berger SL, Kouzarides T, Nakatani Y, Allis CD (1996) The TAF(II)250 subunit of TFIID has histone acetyltransferase activity. Cell 87:1261-1270.
37. Yamamoto T, Horikoshi M (1997) novel substrate specificity of the histone acetyltransferase activity of HIV-1-Tat interactive protein Tip60. J Biol Chem 272:30595-30598.
38. Yang X-J, Ogryzko VV, Nishikawa J, Howard BH, Nakatani Y (1996) A p300/CBP-associated factor that competes with the adenoviral oncoprotein E1A. Nature 382:319-324.
39. Sherman JM, Pillus L (1997) An uncertain silence. Trends Genet 13:308-313.
40. Grant PA, Duggan L, Cote J, Roberts SM, Brownell JE, Candau R, Ohba R, Owen-Hughes T, Allis CD, Winston F, Berger SL, Workman JL (1997) Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: Characterization of an Ada complex and the SAGA (Spt/Ada) complex. Genes Dev 11:1640-1650.
41. Pollard KJ, Peterson CL (1997) Role for ADA/gcn5 products in antagonizing chromatin-mediated transcriptional repression. Mol Cell Biol 17:6212-6222.
42. Saleh A, V Lang, R Cook, CJ Brandi (1997) Identification of native complexes containing the yeast coactivator/repressor proteins NGG1/ADA3 and ADA2. J Biol Chem 272:5571-5578.
43. Bauer WR, Hayes JJ, White JH, Wolffe AP (1994) Nucleosome structural changes due to acetylation. J Mol Biol 236:685-690.
44. Turner BM, O'Neil LP (1995) Histone acetylation in chromatin and chromosomes. Semin Cell Biol 6:229-236.
45. Kuo M, Brownell JE, Sobel RE, Ranalli TA, Cook RG, Edmonson DG, Roth SY, Allis CD (1996) Transcription-linked acetylation by Gcn5p of histones H3 and H4 at specific lysines. Nature 383:269-272.
46. Edmonson DG, Smith MM, Roth SY (1996) Repression domain of the yeast global represser Tup1 interacts directly with histones H3 and H4. Genes Dev 10:1247-1259.
47. Hecht A, Laroche T, Strahl-Bolsinger S, Gasser SM, Grunstein M (1995) Histone H3 and H4 N-termini interact with SIR3 and SIR4 proteins: A molecular model for the formation of heterochromatin in yeast. Cell 80:583-592.
48. Miller ME, Cairns BR, Levinson RS, Yamamoto KR, Engel DA, Smith MM (1996) Adenovirus E1A specifically blocks SWI/SNF-dependent transcriptional activation. Mol Cell Biol 16:5737-5743.
49. Georgakopoulos T, Thiraos G (1992) Two distinct yeast transcriptional activators require the function of the GCN5 protein to promote normal levels of transcription. EMBO J 11:4145-4152.
50. Marcus GA, Silverman N, Berger SA, Horiuchi J, Guarente L (1994) Functional similarity and physical association between GCN5 and ADA2: Putative transcriptional adaptors. EMBO J 13:4807-4815.
51. Roberts SM, Winston F (1997) Essential functional interactions of SAGA, a Saccharomyces cerevisiae complex of Spt, Ada, and Gcn5 proteins, with the Swi/Snf and Srb/Mediator complexes. Genetics 147:451-465.
52. Stillman DJ, Dorland S, Yu Y (1994) Epistasis analysis of suppressor mutations that allow HO expression in the absence of the yeast SWI5 transcriptional activator. Genetics 136:781-788.
53. Heery DM, Kalkhoven E, Hoare S, Parker MG (1997) A signature motif in transcriptional co-activators mediates binding to nuclear receptors. Nature 387:733-736.
54. Henriksson A, Almlof T, Ford J, McEwan IJ, Gustafsson J, Wright APH (1997) Role of the Ada adaptor complex in gene activation by the glucocorticoid receptor. Mol Cell Biol 17:3065-3073.
55. Yoshinaga SK, Peterson CL, Herskowitz I, Yamamoto K (1992) Roles of SWI1, SWI2, and SWI3 proteins for transcriptional enhancement by steroid receptors. Science 258:1598-1604.
56. Farrants AKO, Blomquist P, Kwon H, Wrange O (1997) Glucocorticoid receptor-glucocorticoid response element binding stimulates nucleosome disruption by the SWI/SNF complex. Mol Cell Biol 17:895-905.
57. Ichinose H, Garnier J-M, Chambon P, Losson R (1997) Ligand-dependent interaction between the estrogen receptor and the human homologues of SWI2/SNF2. Gene 188:95-100.
58. Muchardt C, Reyes JC, Bourachot B, Legoy E, Yaniv M (1996) The hbrm and BRG-1 proteins, components of the human SWI/SNF complex, are phosphorylated and excluded from the condensed chromosomes during mitosis. EMBO J 15:3394-3402.
59. Cavin IM, Simpson RT (1997) Interplay of yeast global transcriptional regulators Ssn6p-Tup1p and Swi-Snf and their effect on chromatin structure. EMBO J 16:6263-6271.
60. Arlotta P, Rustighi A, Mantovani F, Manfioletti G, Giancotti V, Tell G, Damante G (1997) High mobility group I proteins interfere with the homeodomain binding to DNA. J Biol Chem 272:29904-29910.
61. Currie RA (1997) Functional interaction between the DNA binding subunit trimerization domain of NF-Y and the high mobility group protein HMG-I(Y). J BiOl Chem 272:30880-30888.
62. Barlev NA, Candau R, Wang L, Darpino P, Silverman N, Berger SL (1995) Characterization of physical interactions of the putative transcriptional adaptor, ADA2, with acidic activation domains and TATA-binding protein. J Biol Chem 270:19337-19344.
63. Chiang YC, Komarnitsky P, Chase D, Denis CL (1996) ADR1 activation of domains contact the histone acetyltransferase GCN5 and the core transcriptional factor TFIIB. J Biol Chem 271:32359-32365.
64. Melcher K, Johnston SA (1995) GAL4 interacts with TATA-binding protein and coactivators. Mol Cell Biol 15:2839-2848.
65. Silverman N, Agapite J, Guarante L (1994) Yeast ADA2 protein binds to the VP16 protein activation domain and activates transcription. Proc Natl Acad Sci USA 91:11665-11668.
66. Georgel PT, Tsukiyama T, Wu C (1997) Role of histone tails in nucleosome remodeling by Drosophila NURF. EMBO J 16:4717-4726.
67. Braunstein M, Sobel RE, Allis CD, Turner BM, Broach JR (1996) Efficient transcriptional silencing in Saccharomyces cerevisiae requires a heterochromatin histone acetylation pattern. Mol Cell Biol 16:4349-4356.
68. Richmond E, Peterson CL (1996) Functional analysis of the DNA-stimulated ATPase domain of yeast SWI2/SNF2. Nucleic Acids Res 24:3685-3692.