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Volumn 765, Issue , 2011, Pages 125-153

Array-Based Synthetic Genetic Screens to Map Bacterial Pathways and Functional Networks in Escherichia coli

Author keywords

Aggravating; Alleviating; Conjugation; Double mutant; Epistasis; Escherichia coli; Genetic interaction; Hypomorphs; Network; Suppression; Synthetic lethality or sickness

Indexed keywords

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; EUKARYOTA; NEGIBACTERIA;

EID: 80052943150     PISSN: 10643745     EISSN: 19406029     Source Type: Book Series    
DOI: 10.1007/978-1-61779-197-0_9     Document Type: Chapter
Times cited : (4)

References (50)
  • 1
    • 66049143558 scopus 로고    scopus 로고
    • Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins
    • Hu P., Janga S. C., Babu M., Diaz-Mejia J. J., Butland G. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol 7, e1000096.
    • (2009) Plos Biol , vol.7
    • Hu, P.1    Janga, S.C.2    Babu, M.3    Diaz-Mejia, J.J.4    Butland, G.5
  • 2
    • 33646347144 scopus 로고    scopus 로고
    • The origins and evolution of functional modules: Lessons from protein complexes
    • Pereira-Leal J. B., Levy E. D., Teichmann S. A. (2006) The origins and evolution of functional modules: lessons from protein complexes. Philos Trans R Soc Lond B Biol Sci 361, 507–517.
    • (2006) Philos Trans R Soc Lond B Biol Sci , vol.361 , pp. 507-517
    • Pereira-Leal, J.B.1    Levy, E.D.2    Teichmann, S.A.3
  • 3
    • 72949098090 scopus 로고    scopus 로고
    • Systems-level approaches for identifying and analyzing genetic interaction networks in Escherichia coli and extensions to other prokaryotes
    • Babu M., Musso G., Diaz-Mejia J. J., Butland G., Greenblatt J. F., Emili A. (2009) Systems-level approaches for identifying and analyzing genetic interaction networks in Escherichia coli and extensions to other prokaryotes. Mol Biosyst 12, 1439–1455.
    • (2009) Mol Biosyst , vol.12 , pp. 1439-1455
    • Babu, M.1    Musso, G.2    Diaz-Mejia, J.J.3    Butland, G.4    Greenblatt, J.F.5    Emili, A.6
  • 4
    • 77953236579 scopus 로고    scopus 로고
    • Quantitative genetic interactions reveal biological modularity
    • Beltrao P., Cagney G., Krogan N. J. (2010) Quantitative genetic interactions reveal biological modularity. Cell 141, 739–745.
    • (2010) Cell , vol.141 , pp. 739-745
    • Beltrao, P.1    Cagney, G.2    Krogan, N.J.3
  • 5
    • 34548024598 scopus 로고    scopus 로고
    • Integrating physical and genetic maps: From genomes to interaction networks
    • Beyer A., Bandyopadhyay S., Ideker T. (2007) Integrating physical and genetic maps: from genomes to interaction networks. Nat Rev Genet 8, 699–710.
    • (2007) Nat Rev Genet , vol.8 , pp. 699-710
    • Beyer, A.1    Bandyopadhyay, S.2    Ideker, T.3
  • 7
    • 43249117094 scopus 로고    scopus 로고
    • Functional maps of protein complexes from quantitative genetic interaction data
    • Bandyopadhyay S., Kelley R., Krogan N. J., Ideker T. (2008) Functional maps of protein complexes from quantitative genetic interaction data. PLoS Comput Biol 4, e1000065.
    • (2008) Plos Comput Biol , vol.4
    • Bandyopadhyay, S.1    Kelley, R.2    Krogan, N.J.3    Ideker, T.4
  • 8
    • 34249041230 scopus 로고    scopus 로고
    • Exploring genetic interactions and networks with yeast
    • Boone C., Bussey H., Andrews B. J. (2007) Exploring genetic interactions and networks with yeast. Nat Rev Genet 8, 437–449.
    • (2007) Nat Rev Genet , vol.8 , pp. 437-449
    • Boone, C.1    Bussey, H.2    Andrews, B.J.3
  • 14
    • 0032715175 scopus 로고    scopus 로고
    • Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda
    • Kuzminov A. (1999) Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda. Microbiol Mol Biol Rev 63, 751–813.
    • (1999) Microbiol Mol Biol Rev , vol.63 , pp. 751-813
    • Kuzminov, A.1
  • 15
    • 0032516073 scopus 로고    scopus 로고
    • Extent of genomic rearrangement after genome duplication in yeast
    • Seoighe C., Wolfe K. H. (1998) Extent of genomic rearrangement after genome duplication in yeast. Proc Natl Acad Sci USA 95, 4447–4452.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 4447-4452
    • Seoighe, C.1    Wolfe, K.H.2
  • 18
    • 2542491030 scopus 로고    scopus 로고
    • The evolution of molecular genetic pathways and networks
    • Cork J. M., Purugganan M. D. (2004) The evolution of molecular genetic pathways and networks. Bioessays 26, 479–484.
    • (2004) Bioessays , vol.26 , pp. 479-484
    • Cork, J.M.1    Purugganan, M.D.2
  • 29
    • 85139103190 scopus 로고    scopus 로고
    • Firth N., Ippen-Ihler K. Skurray R.A. (1996) Structure and function of the F-factor and mechanism of conjugation. Escherichia coli and Salmonella: Cellular and Molecular Biology, Vol. 1 (Neidhardt, F.C., Ed.), ASM Press, Washington, DC, 2377–2401.
    • Firth N., Ippen-Ihler K. Skurray R.A. (1996) Structure and function of the F-factor and mechanism of conjugation. Escherichia coli and Salmonella: Cellular and Molecular Biology, Vol. 1 (Neidhardt, F.C., Ed.), ASM Press, Washington, DC, 2377–2401.
  • 30
    • 0023021741 scopus 로고
    • The conjugation system of F, the fertility factor of Escherichia coli
    • Ippen-Ihler K. A., Minkley E. G., Jr. (1986) The conjugation system of F, the fertility factor of Escherichia coli. Annu Rev Genet 20, 593–624.
    • (1986) Annu Rev Genet , vol.20 , pp. 593-624
    • Ippen-Ihler, K.A.1    Minkley, E.G.2
  • 31
    • 0018363405 scopus 로고
    • Hfr Formation Directed by Tn10
    • Chumley F. G., Menzel R., Roth J. R. (1979) Hfr Formation Directed by Tn10. Genetics 91, 639–655.
    • (1979) Genetics , vol.91 , pp. 639-655
    • Chumley, F.G.1    Menzel, R.2    Roth, J.R.3
  • 33
    • 20744446399 scopus 로고    scopus 로고
    • Structure, function, and formation of biological iron-sulfur clusters
    • Johnson D. C., Dean D. R., Smith A. D., Johnson M. K. (2005) Structure, function, and formation of biological iron-sulfur clusters. Annu Rev Biochem 74, 247–281.
    • (2005) Annu Rev Biochem , vol.74 , pp. 247-281
    • Johnson, D.C.1    Dean, D.R.2    Smith, A.D.3    Johnson, M.K.4
  • 36
    • 70349611730 scopus 로고    scopus 로고
    • Tn-seq: High-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms
    • van Opijnen T., Bodi K. L., Camilli A. (2009) Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms. Nat Methods 6, 767–772.
    • (2009) Nat Methods , vol.6 , pp. 767-772
    • van Opijnen, T.1    Bodi, K.L.2    Camilli, A.3
  • 37
  • 38
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko K. A., Wanner B. L. (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 97, 6640–6645.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 40
    • 33747367151 scopus 로고    scopus 로고
    • A strategy for extracting and analyzing large-scale quantitative epistatic interaction data
    • Collins S. R., Schuldiner M., Krogan N. J., Weissman J. S. (2006) A strategy for extracting and analyzing large-scale quantitative epistatic interaction data. Genome Biol 7, R63.
    • (2006) Genome Biol , vol.7 , pp. R63
    • Collins, S.R.1    Schuldiner, M.2    Krogan, N.J.3    Weissman, J.S.4
  • 41
    • 44849087833 scopus 로고    scopus 로고
    • Mapping genetically compensatory pathways from synthetic lethal interactions in yeast
    • Ma X., Tarone A. M., Li W. (2008) Mapping genetically compensatory pathways from synthetic lethal interactions in yeast. PLoS One 3, e1922.
    • (2008) Plos One , vol.3
    • Ma, X.1    Tarone, A.M.2    Li, W.3
  • 42
    • 85139176538 scopus 로고    scopus 로고
    • Kanehisa M. (2002) The KEGG database. Novartis Found Symp 247, 91–101; discussion 101–3, 119–28, 244–252.
    • Kanehisa M. (2002) The KEGG database. Novartis Found Symp 247, 91–101; discussion 101–3, 119–28, 244–252.
  • 44
    • 0034570532 scopus 로고    scopus 로고
    • MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products
    • Serres M. H., Riley M. (2000) MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products. Microb Comp Genomics 5, 205–222.
    • (2000) Microb Comp Genomics , vol.5 , pp. 205-222
    • Serres, M.H.1    Riley, M.2
  • 45
    • 53849103270 scopus 로고    scopus 로고
    • Modeling synthetic lethality
    • Le Meur N., Gentleman R. (2008) Modeling synthetic lethality. Genome Biol 9, R135.
    • (2008) Genome Biol , vol.9 , pp. R135
    • Le Meur, N.1    Gentleman, R.2
  • 46
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • Benjamini Y., Yekutieli D. (2001) The control of the false discovery rate in multiple testing under dependency. Annals of Statistics 29, 1165–1188.
    • (2001) Annals of Statistics , vol.29 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.