-
2
-
-
0031728645
-
Nitrogen saturation in temperate forest ecosystems-hypotheses revisited
-
Aber J, McDowell W, Nadelhoffer K, Magill A, Berntson G, Kamakea M, McNulty S, Currie W, Rustad L, Fernandez I (1998) Nitrogen saturation in temperate forest ecosystems-hypotheses revisited. Bioscience 48: 921-934.
-
(1998)
Bioscience
, vol.48
, pp. 921-934
-
-
Aber, J.1
McDowell, W.2
Nadelhoffer, K.3
Magill, A.4
Berntson, G.5
Kamakea, M.6
McNulty, S.7
Currie, W.8
Rustad, L.9
Fernandez, I.10
-
3
-
-
0037390852
-
Is nitrogen deposition altering the nitrogen status of northeastern forests?
-
Aber JD, Goodale CL, Ollinger SV, Smith M, Magill AH, Martin ME, Hallett RA, Stoddard JL (2003) Is nitrogen deposition altering the nitrogen status of northeastern forests? Bioscience 53: 375.
-
(2003)
Bioscience
, vol.53
, pp. 375
-
-
Aber, J.D.1
Goodale, C.L.2
Ollinger, S.V.3
Smith, M.4
Magill, A.H.5
Martin, M.E.6
Hallett, R.A.7
Stoddard, J.L.8
-
4
-
-
0002654469
-
Urease activity in neutrophilic autotrophic ammonia-oxidizing bacteria isolated from acid soils
-
Allison S, Prosser J (1991) Urease activity in neutrophilic autotrophic ammonia-oxidizing bacteria isolated from acid soils. Soil Biol Biochem 23: 45-51.
-
(1991)
Soil Biol Biochem
, vol.23
, pp. 45-51
-
-
Allison, S.1
Prosser, J.2
-
5
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann R, Ludwig W, Schleifer K (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169.
-
(1995)
Microbiol Rev
, vol.59
, pp. 143-169
-
-
Amann, R.1
Ludwig, W.2
Schleifer, K.3
-
6
-
-
0142040853
-
Patterns of community change among ammonia oxidizers in meadow soils upon long-term incubation at different temperatures
-
Avrahami S, Conrad R (2003) Patterns of community change among ammonia oxidizers in meadow soils upon long-term incubation at different temperatures. Appl Environ Microbiol 69: 6152-6164.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 6152-6164
-
-
Avrahami, S.1
Conrad, R.2
-
7
-
-
0141786957
-
Liming induces growth of a diverse flora of ammonia-oxidising bacteria in acid spruce forest soil as determined by SSCP and DGGE
-
Bäckman JSK, Hermansson A, Tebbe CC, Lindgren PE (2003) Liming induces growth of a diverse flora of ammonia-oxidising bacteria in acid spruce forest soil as determined by SSCP and DGGE. Soil Biol Biochem 35: 1337-1347.
-
(2003)
Soil Biol Biochem
, vol.35
, pp. 1337-1347
-
-
Bäckman, J.S.K.1
Hermansson, A.2
Tebbe, C.C.3
Lindgren, P.E.4
-
8
-
-
0029109744
-
15N pool dilution and enrichment to separate the heterotrophic and autotrophic pathways of nitrification
-
15N pool dilution and enrichment to separate the heterotrophic and autotrophic pathways of nitrification. Soil Biol Biochem 27: 17-22.
-
(1995)
Soil Biol Biochem
, vol.27
, pp. 17-22
-
-
Barraclough, D.1
Puri, G.2
-
9
-
-
42049122119
-
Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California
-
Beman JM, Popp BN, Francis CA (2008) Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California. ISME J 2: 429-441.
-
(2008)
ISME J
, vol.2
, pp. 429-441
-
-
Beman, J.M.1
Popp, B.N.2
Francis, C.A.3
-
10
-
-
77953553271
-
Population ecology of nitrifying Archaea and Bacteria in the Southern California Bight
-
Beman JM, Sachdeva R, Fuhrman JA (2010) Population ecology of nitrifying Archaea and Bacteria in the Southern California Bight. Environ Microbiol 12: 1282-1292.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1282-1292
-
-
Beman, J.M.1
Sachdeva, R.2
Fuhrman, J.A.3
-
11
-
-
0002443537
-
The components of nitrogen availability assessments in forest soils
-
B. A. Stewart (Ed.), New York: Springer
-
Binkley D, Hart SC (1989) The components of nitrogen availability assessments in forest soils. In: Stewart BA (ed) Advances in soil science, vol 10. Springer, New York, pp 57-112.
-
(1989)
Advances in Soil Science, Vol 10
, pp. 57-112
-
-
Binkley, D.1
Hart, S.C.2
-
12
-
-
0031013145
-
Molecular phylogeny of Archaea from soil
-
Bintrim SB, Donohue TJ, Handelsman J, Roberts GP, Goodman RM (1997) Molecular phylogeny of Archaea from soil. Proc Natl Acad Sci USA 94: 277-282.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 277-282
-
-
Bintrim, S.B.1
Donohue, T.J.2
Handelsman, J.3
Roberts, G.P.4
Goodman, R.M.5
-
13
-
-
18444366773
-
Control on nitrogen cycling in terrestrial ecosystem: a synthetic analysis of literature data
-
Booth MS, Stark JM, Rastetter E (2005) Control on nitrogen cycling in terrestrial ecosystem: a synthetic analysis of literature data. Ecol Monogr 75: 139-157.
-
(2005)
Ecol Monogr
, vol.75
, pp. 139-157
-
-
Booth, M.S.1
Stark, J.M.2
Rastetter, E.3
-
14
-
-
0000510435
-
Nitrogen budget for an aggrading northern hardwood forest ecosystem
-
Bormann FH, Likens GE, Melillo JM (1977) Nitrogen budget for an aggrading northern hardwood forest ecosystem. Science 196: 981-983.
-
(1977)
Science
, vol.196
, pp. 981-983
-
-
Bormann, F.H.1
Likens, G.E.2
Melillo, J.M.3
-
15
-
-
65349132988
-
Negative impact of nitrogen deposition on soil buffering capacity
-
Bowman WD, Cleveland CC, Halada Ĺ, Hreško J, Baron JS (2008) Negative impact of nitrogen deposition on soil buffering capacity. Nat Geosci 1: 767-770.
-
(2008)
Nat Geosci
, vol.1
, pp. 767-770
-
-
Bowman, W.D.1
Cleveland, C.C.2
Halada, L.3
Hreško, J.4
Baron, J.S.5
-
16
-
-
0034882614
-
Heterotrophic nitrification in an acid forest soil: isolation and characterisation of a nitrifying bacterium
-
Brierley EDR, Wood M (2001) Heterotrophic nitrification in an acid forest soil: isolation and characterisation of a nitrifying bacterium. Soil Biol Biochem 33: 1403-1409.
-
(2001)
Soil Biol Biochem
, vol.33
, pp. 1403-1409
-
-
Brierley, E.D.R.1
Wood, M.2
-
17
-
-
0033015223
-
Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils
-
Bruns MA, Stephen JR, Kowalchuk GA, Prosser JI, Paul EA (1999) Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils. Appl Environ Microbiol 65: 2994-3000.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 2994-3000
-
-
Bruns, M.A.1
Stephen, J.R.2
Kowalchuk, G.A.3
Prosser, J.I.4
Paul, E.A.5
-
18
-
-
0031733317
-
Phylogenetic analysis of nonthermophilic members of the kingdom Crenarchaeota and their diversity and abundance in soils
-
Buckley DH, Graber JR, Schmidt TM (1998) Phylogenetic analysis of nonthermophilic members of the kingdom Crenarchaeota and their diversity and abundance in soils. Appl Environ Microbiol 64: 4333-4339.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 4333-4339
-
-
Buckley, D.H.1
Graber, J.R.2
Schmidt, T.M.3
-
19
-
-
0035408582
-
Autotrophic ammonia oxidation at low pH through urea hydrolysis
-
Burton SA, Prosser JI (2001) Autotrophic ammonia oxidation at low pH through urea hydrolysis. Appl Environ Microbiol 67: 2952-2957.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 2952-2957
-
-
Burton, S.A.1
Prosser, J.I.2
-
20
-
-
33846459656
-
Community structure of ammonia-oxidizing bacteria under long-term application of mineral fertilizer and organic manure in a sandy loam soil
-
Chu H, Fujii T, Morimoto S, Lin X, Yagi K, Hu J, Zhang J (2007) Community structure of ammonia-oxidizing bacteria under long-term application of mineral fertilizer and organic manure in a sandy loam soil. Appl Environ Microbiol 73: 485-491.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 485-491
-
-
Chu, H.1
Fujii, T.2
Morimoto, S.3
Lin, X.4
Yagi, K.5
Hu, J.6
Zhang, J.7
-
21
-
-
3042845753
-
Response of soil microbial biomass and community composition to chronic nitrogen additions at Harvard forest
-
Compton J, Watrud L, Arleneporteous L, Degrood S (2004) Response of soil microbial biomass and community composition to chronic nitrogen additions at Harvard forest. For Ecol Manage 196: 143-158.
-
(2004)
For Ecol Manage
, vol.196
, pp. 143-158
-
-
Compton, J.1
Watrud, L.2
Arleneporteous, L.3
Degrood, S.4
-
24
-
-
0026595464
-
Internal cycling of nitrate in soils of a mature coniferous forest
-
Davidson EA, Hart SC, Firestone MK (1992) Internal cycling of nitrate in soils of a mature coniferous forest. Ecology 73: 1148.
-
(1992)
Ecology
, vol.73
, pp. 1148
-
-
Davidson, E.A.1
Hart, S.C.2
Firestone, M.K.3
-
25
-
-
0034973916
-
Nitrification in acid soils: micro-organisms and mechanisms
-
De Boer W, Kowalchuk GA (2001) Nitrification in acid soils: micro-organisms and mechanisms. Soil Biol Biochem 33: 853-866.
-
(2001)
Soil Biol Biochem
, vol.33
, pp. 853-866
-
-
de Boer, W.1
Kowalchuk, G.A.2
-
26
-
-
38249021684
-
Urea stimulated autotrophic nitrification in suspensions of fertilized, acid heath soil
-
De Boer W, Duyts H, Laanbroek HJ (1989) Urea stimulated autotrophic nitrification in suspensions of fertilized, acid heath soil. Soil Biol Biochem 21: 349-354.
-
(1989)
Soil Biol Biochem
, vol.21
, pp. 349-354
-
-
de Boer, W.1
Duyts, H.2
Laanbroek, H.J.3
-
27
-
-
0025919711
-
Nitrification at low pH by aggregated chemolithotrophic bacteria
-
De Boer W, Gunnewiek PJAK, Veenhuis M, Bock E, Laanbroek HJ (1991) Nitrification at low pH by aggregated chemolithotrophic bacteria. Appl Environ Microbiol 57: 3600-3604.
-
(1991)
Appl Environ Microbiol
, vol.57
, pp. 3600-3604
-
-
de Boer, W.1
Gunnewiek, P.J.A.K.2
Veenhuis, M.3
Bock, E.4
Laanbroek, H.J.5
-
28
-
-
0027087866
-
The chemolithotrophic ammonium-oxidizing community in a nitrogen-saturated acid forest soil in relation to pH-dependent nitrifying activity
-
De Boer W, Tietema A, Gunnewiek P, Laanbroek H (1992) The chemolithotrophic ammonium-oxidizing community in a nitrogen-saturated acid forest soil in relation to pH-dependent nitrifying activity. Soil Biol Biochem 24: 229-234.
-
(1992)
Soil Biol Biochem
, vol.24
, pp. 229-234
-
-
de Boer, W.1
Tietema, A.2
Gunnewiek, P.3
Laanbroek, H.4
-
29
-
-
70149118163
-
Nitrification driven by bacteria and not archaea in nitrogen-rich grassland soils
-
Di HJ, Cameron KC, Shen JP, Winefield CS, O'Callaghan M, Bowatte S, He JZ (2009) Nitrification driven by bacteria and not archaea in nitrogen-rich grassland soils. Nat Geosci 2: 621-624.
-
(2009)
Nat Geosci
, vol.2
, pp. 621-624
-
-
Di, H.J.1
Cameron, K.C.2
Shen, J.P.3
Winefield, C.S.4
O'Callaghan, M.5
Bowatte, S.6
He, J.Z.7
-
30
-
-
0028844780
-
Nitrogen leaching from European forests in relation to nitrogen deposition
-
Dise N, Wright RF (1995) Nitrogen leaching from European forests in relation to nitrogen deposition. For Ecol Manage 71: 153-161.
-
(1995)
For Ecol Manage
, vol.71
, pp. 153-161
-
-
Dise, N.1
Wright, R.F.2
-
31
-
-
0024926908
-
A dilute medium to determine population size of ammonium oxidizers in forest soils
-
Donaldson JM, Henderson GS (1989) A dilute medium to determine population size of ammonium oxidizers in forest soils. Soil Sci Soc Am J 53: 1608-1611.
-
(1989)
Soil Sci Soc Am J
, vol.53
, pp. 1608-1611
-
-
Donaldson, J.M.1
Henderson, G.S.2
-
32
-
-
56449119534
-
Nitrogen leaching in response to increased nitrogen inputs in subtropical monsoon forests in southern China
-
Fang Y, Gundersen P, Mo J, Zhu W (2009a) Nitrogen leaching in response to increased nitrogen inputs in subtropical monsoon forests in southern China. For Ecol Manage 257: 332-342.
-
(2009)
For Ecol Manage
, vol.257
, pp. 332-342
-
-
Fang, Y.1
Gundersen, P.2
Mo, J.3
Zhu, W.4
-
33
-
-
58849164326
-
Large loss of dissolved organic nitrogen from nitrogen-saturated forests in subtropical China
-
Fang Y, Zhu W, Gundersen P, Mo J, Zhou G, Yoh M (2009b) Large loss of dissolved organic nitrogen from nitrogen-saturated forests in subtropical China. Ecosystems 12: 33-45.
-
(2009)
Ecosystems
, vol.12
, pp. 33-45
-
-
Fang, Y.1
Zhu, W.2
Gundersen, P.3
Mo, J.4
Zhou, G.5
Yoh, M.6
-
36
-
-
0001349433
-
Biochemical ecology of nitrification and denitrification
-
In: Alexander M (ed) Plenum Press, New York
-
Focht DD, Verstraete W (1977) Biochemical ecology of nitrification and denitrification. In: Alexander M (ed) Advances in microbial ecology, vol. 1. Plenum Press, New York, pp 135-214.
-
(1977)
Advances in microbial ecology
, vol.1
, pp. 135-214
-
-
Focht, D.D.1
Verstraete, W.2
-
37
-
-
26844541457
-
Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
-
Francis CA, Roberts KJ, Beman JM, Santoro AE, Oakley BB (2005) Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc Natl Acad Sci USA 102: 14683-14688.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 14683-14688
-
-
Francis, C.A.1
Roberts, K.J.2
Beman, J.M.3
Santoro, A.E.4
Oakley, B.B.5
-
38
-
-
29144506348
-
Influence of inorganic nitrogen management regime on the diversity of nitrite-oxidizing bacteria in agricultural grassland soils
-
Freitag TE, Chang L, Clegg CD, Prosser JI (2005) Influence of inorganic nitrogen management regime on the diversity of nitrite-oxidizing bacteria in agricultural grassland soils. Appl Environ Microbiol 71: 8323-8334.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 8323-8334
-
-
Freitag, T.E.1
Chang, L.2
Clegg, C.D.3
Prosser, J.I.4
-
39
-
-
0029530261
-
Nitrogen fixation: anthropogenic enhancement and environmental response
-
Galloway JN, Schlesinger WH, Levy H II, Michaels A, Schnoor JL (1995) Nitrogen fixation: anthropogenic enhancement and environmental response. Glob Biogeochem Cycle 9: 235-252.
-
(1995)
Glob Biogeochem Cycle
, vol.9
, pp. 235-252
-
-
Galloway, J.N.1
Schlesinger, W.H.2
Levy II, H.3
Michaels, A.4
Schnoor, J.L.5
-
40
-
-
0037389818
-
The nitrogen cascade
-
Galloway JN, Aber JD, Erisman JW, Seitzinger SP, Howarth RW, Cowling EB, Cosby BJ (2003) The nitrogen cascade. Bioscience 53: 341-356.
-
(2003)
Bioscience
, vol.53
, pp. 341-356
-
-
Galloway, J.N.1
Aber, J.D.2
Erisman, J.W.3
Seitzinger, S.P.4
Howarth, R.W.5
Cowling, E.B.6
Cosby, B.J.7
-
41
-
-
33748707177
-
Microarray applications in microbial ecology research
-
Gentry TJ, Wickham GS, Schadt CW, He Z, Zhou J (2006) Microarray applications in microbial ecology research. Microb Ecol 52: 159-175.
-
(2006)
Microb Ecol
, vol.52
, pp. 159-175
-
-
Gentry, T.J.1
Wickham, G.S.2
Schadt, C.W.3
He, Z.4
Zhou, J.5
-
42
-
-
3242794465
-
Temperature sensitivity of mineral N transformation rates, and heterotrophic nitrification: possible factors controlling the post-disturbance mineral N flush in forest floors
-
Grenon F, Bradley RL, Titus BD (2004) Temperature sensitivity of mineral N transformation rates, and heterotrophic nitrification: possible factors controlling the post-disturbance mineral N flush in forest floors. Soil Biol Biochem 36: 1465-1474.
-
(2004)
Soil Biol Biochem
, vol.36
, pp. 1465-1474
-
-
Grenon, F.1
Bradley, R.L.2
Titus, B.D.3
-
43
-
-
0032006089
-
Impact of nitrogen deposition on nitrogen cycling in forests: a synthesis of NITREX data
-
Gundersen P (1998) Impact of nitrogen deposition on nitrogen cycling in forests: a synthesis of NITREX data. For Ecol Manage 101: 37-55.
-
(1998)
For Ecol Manage
, vol.101
, pp. 37-55
-
-
Gundersen, P.1
-
44
-
-
0025215295
-
Nitrification in forest soils: effects from nitrogen deposition on soil acidification and aluminum release
-
Gundersen P, Rasmussen L (1990) Nitrification in forest soils: effects from nitrogen deposition on soil acidification and aluminum release. Rev Environ Contam T 113: 1-45.
-
(1990)
Rev Environ Contam T
, vol.113
, pp. 1-45
-
-
Gundersen, P.1
Rasmussen, L.2
-
45
-
-
10344227692
-
Metagenomics: application of genomics to uncultured microorganisms
-
Handelsman J (2004) Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol R 68: 669-685.
-
(2004)
Microbiol Mol Biol R
, vol.68
, pp. 669-685
-
-
Handelsman, J.1
-
46
-
-
0028159944
-
Dynamics of gross nitrogen transformations in an old-growth forest: the carbon connection
-
Hart SC, Nason GE, Myrold DD, Perry DA (1994a) Dynamics of gross nitrogen transformations in an old-growth forest: the carbon connection. Ecology 75: 880.
-
(1994)
Ecology
, vol.75
, pp. 880
-
-
Hart, S.C.1
Nason, G.E.2
Myrold, D.D.3
Perry, D.A.4
-
47
-
-
0000652155
-
Nitrogen mineralization, immobilization, and nitrification
-
In: Weaver CA, Bottomley P (eds) Methods of soil analysis: microbiological and biochemical properties
-
Hart SC, Stark JM, Davidson EA, Firestone MK (1994b) Nitrogen mineralization, immobilization, and nitrification. In: Weaver CA, Bottomley P (eds) Methods of soil analysis: microbiological and biochemical properties. Soil Sci Soc Am J, 985-1018.
-
(1994)
Soil Sci Soc Am J
, pp. 985-1018
-
-
Hart, S.C.1
Stark, J.M.2
Davidson, E.A.3
Firestone, M.K.4
-
48
-
-
0031194093
-
Influence of red alder on soil nitrogen transformations in two conifer forests of contrasting productivity
-
Hart SC, Binkley D, Perry DA (1997) Influence of red alder on soil nitrogen transformations in two conifer forests of contrasting productivity. Soil Biol Biochem 29: 1111-1123.
-
(1997)
Soil Biol Biochem
, vol.29
, pp. 1111-1123
-
-
Hart, S.C.1
Binkley, D.2
Perry, D.A.3
-
49
-
-
24344487936
-
Plant invasion alters nitrogen cycling by modifying the soil nitrifying community
-
Hawkes CV, Wren IF, Herman DJ, Firestone MK (2005) Plant invasion alters nitrogen cycling by modifying the soil nitrifying community. Ecol Lett 8: 976-985.
-
(2005)
Ecol Lett
, vol.8
, pp. 976-985
-
-
Hawkes, C.V.1
Wren, I.F.2
Herman, D.J.3
Firestone, M.K.4
-
50
-
-
38049023927
-
Various players in the nitrogen cycle: diversity and functions of the microorganisms involved in nitrification and denitrification
-
Hayatsu M, Tago K, Saito M (2008) Various players in the nitrogen cycle: diversity and functions of the microorganisms involved in nitrification and denitrification. Soil Sci Plant Nutr 54: 33-45.
-
(2008)
Soil Sci Plant Nutr
, vol.54
, pp. 33-45
-
-
Hayatsu, M.1
Tago, K.2
Saito, M.3
-
51
-
-
34248159046
-
GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes
-
He Z, Gentry TJ, Schadt CW, Wu L, Liebich J, Chong SC, Huang Z, Wu W, Gu B, Jardine P, Criddle C, Zhou J (2007) GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes. ISME J 1: 67-77.
-
(2007)
ISME J
, vol.1
, pp. 67-77
-
-
He, Z.1
Gentry, T.J.2
Schadt, C.W.3
Wu, L.4
Liebich, J.5
Chong, S.C.6
Huang, Z.7
Wu, W.8
Gu, B.9
Jardine, P.10
Criddle, C.11
Zhou, J.12
-
52
-
-
0027184336
-
The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by analysis of 16S ribosomal RNA gene sequences
-
Head IM, Hiorns WD, Embley TM, McCarthy AJ, Saunders JR (1993) The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by analysis of 16S ribosomal RNA gene sequences. Microbiology 139: 1147-1153.
-
(1993)
Microbiology
, vol.139
, pp. 1147-1153
-
-
Head, I.M.1
Hiorns, W.D.2
Embley, T.M.3
McCarthy, A.J.4
Saunders, J.R.5
-
54
-
-
36849073678
-
Sequencing breakthroughs for genomic ecology and evolutionary biology
-
Hudson ME (2008) Sequencing breakthroughs for genomic ecology and evolutionary biology. Mol Ecol Resour 8: 3-17.
-
(2008)
Mol Ecol Resour
, vol.8
, pp. 3-17
-
-
Hudson, M.E.1
-
55
-
-
51849100442
-
Mechanisms for retention of bioavailable nitrogen in volcanic rainforest soils
-
Huygens D, Boeckx P, Templer P, Paulino L, van Cleemput O, Oyarzún C, Müller C, Godoy R (2008) Mechanisms for retention of bioavailable nitrogen in volcanic rainforest soils. Nat Geosci 1: 543-548.
-
(2008)
Nat Geosci
, vol.1
, pp. 543-548
-
-
Huygens, D.1
Boeckx, P.2
Templer, P.3
Paulino, L.4
van Cleemput, O.5
Oyarzún, C.6
Müller, C.7
Godoy, R.8
-
56
-
-
33846524847
-
Heterotrophic and autotrophic nitrification in two acid pasture soils
-
Islam A, Chen D, White R (2007) Heterotrophic and autotrophic nitrification in two acid pasture soils. Soil Biol Biochem 39: 972-975.
-
(2007)
Soil Biol Biochem
, vol.39
, pp. 972-975
-
-
Islam, A.1
Chen, D.2
White, R.3
-
57
-
-
67649939034
-
Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil
-
Jia Z, Conrad R (2009) Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil. Environ Microbiol 11: 1658-1671.
-
(2009)
Environ Microbiol
, vol.11
, pp. 1658-1671
-
-
Jia, Z.1
Conrad, R.2
-
58
-
-
0032878687
-
Comparison of Nitrosospira strains isolated from terrestrial environments
-
Jiang QQ, Bakken LR (1999) Comparison of Nitrosospira strains isolated from terrestrial environments. FEMS Microbiol Ecol 30: 171-186.
-
(1999)
FEMS Microbiol Ecol
, vol.30
, pp. 171-186
-
-
Jiang, Q.Q.1
Bakken, L.R.2
-
59
-
-
77950526876
-
Dormancy contributes to the maintenance of microbial diversity
-
Jones SE, Lennon JT (2010) Dormancy contributes to the maintenance of microbial diversity. Proc Natl Acad Sci USA 107: 5881-5886.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 5881-5886
-
-
Jones, S.E.1
Lennon, J.T.2
-
60
-
-
12244291014
-
Autotrophic ammonia-oxidizing bacteria contribute minimally to nitrification in a nitrogen-impacted forested ecosystem
-
Jordan FL, Cantera JJ, Fenn ME, Stein LY (2005) Autotrophic ammonia-oxidizing bacteria contribute minimally to nitrification in a nitrogen-impacted forested ecosystem. Appl Environ Microbiol 71: 197-206.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 197-206
-
-
Jordan, F.L.1
Cantera, J.J.2
Fenn, M.E.3
Stein, L.Y.4
-
61
-
-
74149086631
-
Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment
-
Junier P, Molina V, Dorador C, Hadas O, Kim O, Junier T, Witzel J, Imhoff JF (2010) Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment. Appl Microbiol Biot 85: 425-440.
-
(2010)
Appl Microbiol Biot
, vol.85
, pp. 425-440
-
-
Junier, P.1
Molina, V.2
Dorador, C.3
Hadas, O.4
Kim, O.5
Junier, T.6
Witzel, J.7
Imhoff, J.F.8
-
62
-
-
0030894624
-
Novel group within the kingdom Crenarchaeota from boreal forest soil
-
Jurgens G, Lindstrom K, Saano A (1997) Novel group within the kingdom Crenarchaeota from boreal forest soil. Appl Environ Microbiol 63: 803-805.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 803-805
-
-
Jurgens, G.1
Lindstrom, K.2
Saano, A.3
-
63
-
-
0031106985
-
Competition for nitrogen between plants and soil microorganisms
-
Kaye JP, Hart SC (1997) Competition for nitrogen between plants and soil microorganisms. Trends Ecol Evol 12: 139-143.
-
(1997)
Trends Ecol Evol
, vol.12
, pp. 139-143
-
-
Kaye, J.P.1
Hart, S.C.2
-
64
-
-
0025692932
-
Nitrification in coniferous forest soils
-
Killham K (1990) Nitrification in coniferous forest soils. Plant Soil 128: 31-44.
-
(1990)
Plant Soil
, vol.128
, pp. 31-44
-
-
Killham, K.1
-
65
-
-
25644435673
-
Isolation of an autotrophic ammonia-oxidizing marine archaeon
-
Könneke M, Bernhard AE, de La Torre JR, Walker CB, Waterbury JB, Stahl DA (2005) Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437: 543-546.
-
(2005)
Nature
, vol.437
, pp. 543-546
-
-
Könneke, M.1
Bernhard, A.E.2
de la Torre, J.R.3
Walker, C.B.4
Waterbury, J.B.5
Stahl, D.A.6
-
66
-
-
0034775280
-
Ammonia-oxidizing bacteria: a model for molecular microbial ecology
-
Kowalchuk GA, Stephen JR (2001) Ammonia-oxidizing bacteria: a model for molecular microbial ecology. Annu Rev Microbiol 55: 485-529.
-
(2001)
Annu Rev Microbiol
, vol.55
, pp. 485-529
-
-
Kowalchuk, G.A.1
Stephen, J.R.2
-
67
-
-
0030901922
-
Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments
-
Kowalchuk G, Stephen J, De Boer W, Prosser J, Embley T, Woldendorp J (1997) Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments. Appl Environ Microbiol 63: 1489-1497.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 1489-1497
-
-
Kowalchuk, G.1
Stephen, J.2
de Boer, W.3
Prosser, J.4
Embley, T.5
Woldendorp, J.6
-
68
-
-
0034548634
-
Changes in the community structure of ammonia-oxidizing bacteria during secondary succession of calcareous grasslands
-
Kowalchuk GA, Stienstra AW, Stephen JR, Woldendorp JW (2000) Changes in the community structure of ammonia-oxidizing bacteria during secondary succession of calcareous grasslands. Environ Microbiol 2: 99-110.
-
(2000)
Environ Microbiol
, vol.2
, pp. 99-110
-
-
Kowalchuk, G.A.1
Stienstra, A.W.2
Stephen, J.R.3
Woldendorp, J.W.4
-
69
-
-
80052358548
-
Shibata H Gross nitrification rates in four Japanese forest soils: heterotrophic versus autotrophic and the regulation factors for the nitrification
-
(in review)
-
Kuroiwa M, Koba K, Isobe K, Tateno R, Nakanishi A, Inagaki Y, Toda H, Otsuka S, Senoo K, Suwa Y, Yoh M, Shibata H Gross nitrification rates in four Japanese forest soils: heterotrophic versus autotrophic and the regulation factors for the nitrification. J For Res (in review).
-
J For Res
-
-
Kuroiwa, M.1
Koba, K.2
Isobe, K.3
Tateno, R.4
Nakanishi, A.5
Inagaki, Y.6
Toda, H.7
Otsuka, S.8
Senoo, K.9
Suwa, Y.10
Yoh, M.11
-
70
-
-
0034899302
-
Spatiotemporal stability of an ammonia-oxidizing community in a nitrogen-saturated forest soil
-
Laverman A, Speksnijder A, Braster M, Kowalchuk G, Verhoef H, van Verseveld H (2001) Spatiotemporal stability of an ammonia-oxidizing community in a nitrogen-saturated forest soil. Microb Ecol 42: 35-45.
-
(2001)
Microb Ecol
, vol.42
, pp. 35-45
-
-
Laverman, A.1
Speksnijder, A.2
Braster, M.3
Kowalchuk, G.4
Verhoef, H.5
van Verseveld, H.6
-
71
-
-
20644442240
-
Bacterial community structure and metabolic profiles in a forest soil exhibiting spatially variable net nitrate production
-
Laverman A, Braster M, Roling W, Vanverseveld H (2005) Bacterial community structure and metabolic profiles in a forest soil exhibiting spatially variable net nitrate production. Soil Biol Biochem 37: 1581-1588.
-
(2005)
Soil Biol Biochem
, vol.37
, pp. 1581-1588
-
-
Laverman, A.1
Braster, M.2
Roling, W.3
Vanverseveld, H.4
-
72
-
-
33747479446
-
Archaea predominate among ammonia-oxidizing prokaryotes in soils
-
Leininger S, Urich T, Schloter M, Schwark L, Qi J, Nicol GW, Prosser JI, Schuster SC, Schleper C (2006) Archaea predominate among ammonia-oxidizing prokaryotes in soils. Nature 442: 806-809.
-
(2006)
Nature
, vol.442
, pp. 806-809
-
-
Leininger, S.1
Urich, T.2
Schloter, M.3
Schwark, L.4
Qi, J.5
Nicol, G.W.6
Prosser, J.I.7
Schuster, S.C.8
Schleper, C.9
-
73
-
-
0029668618
-
Long-term effects of acid rain: response and recovery of a forest ecosystem
-
Likens GE, Driscoll CT, Buso DC (1996) Long-term effects of acid rain: response and recovery of a forest ecosystem. Science 272: 244-246.
-
(1996)
Science
, vol.272
, pp. 244-246
-
-
Likens, G.E.1
Driscoll, C.T.2
Buso, D.C.3
-
74
-
-
0030661563
-
Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
-
Liu W, Marsh T, Cheng H, Forney L (1997) Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl Environ Microbiol 63: 4516-4522.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 4516-4522
-
-
Liu, W.1
Marsh, T.2
Cheng, H.3
Forney, L.4
-
75
-
-
0020969842
-
Nitrogen oxides in the troposphere: global and regional budgets
-
Logan JA (1983) Nitrogen oxides in the troposphere: global and regional budgets. J Geophys Res 88: 10785-10807.
-
(1983)
J Geophys Res
, vol.88
, pp. 10785-10807
-
-
Logan, J.A.1
-
76
-
-
3042769434
-
Ecosystem response to 15 years of chronic nitrogen additions at the Harvard Forest LTER, Massachusetts, USA
-
Magill A, Aber J, Currie W, Nadelhoffer K, Martin M, McDowell W, Melillo J, Steudler P (2004) Ecosystem response to 15 years of chronic nitrogen additions at the Harvard Forest LTER, Massachusetts, USA. For Ecol Manage 196: 7-28.
-
(2004)
For Ecol Manage
, vol.196
, pp. 7-28
-
-
Magill, A.1
Aber, J.2
Currie, W.3
Nadelhoffer, K.4
Martin, M.5
McDowell, W.6
Melillo, J.7
Steudler, P.8
-
77
-
-
0036840287
-
RNA stable isotope probing, a novel means of linking microbial community function to phylogeny
-
Manefield M, Whiteley AS, Griffiths RI, Bailey MJ (2002) RNA stable isotope probing, a novel means of linking microbial community function to phylogeny. Appl Environ Microbiol 68: 5367-5373.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 5367-5373
-
-
Manefield, M.1
Whiteley, A.S.2
Griffiths, R.I.3
Bailey, M.J.4
-
78
-
-
70350052417
-
Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria
-
Martens-Habbena W, Berube PM, Urakawa H, de La Torre JR, Stahl DA (2009) Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria. Nature 461: 976-979.
-
(2009)
Nature
, vol.461
, pp. 976-979
-
-
Martens-Habbena, W.1
Berube, P.M.2
Urakawa, H.3
de la Torre, J.R.4
Stahl, D.A.5
-
79
-
-
0036010871
-
The globalization of nitrogen deposition: consequences for terrestrial ecosystems
-
Matson P, Lohse KA, Hall SJ (2002) The globalization of nitrogen deposition: consequences for terrestrial ecosystems. Ambio 31: 113-119.
-
(2002)
Ambio
, vol.31
, pp. 113-119
-
-
Matson, P.1
Lohse, K.A.2
Hall, S.J.3
-
80
-
-
77957245614
-
Seasonal change in methanotrophic diversity and populations in a rice field soil assessed by DNA-stable isotope probing and quantitative real-time PCR
-
Mayumi D, Yoshimoto T, Uchiyama H, Nomura N, Nakajima-Kambe T (2010) Seasonal change in methanotrophic diversity and populations in a rice field soil assessed by DNA-stable isotope probing and quantitative real-time PCR. Microbes Environ 25: 156-163.
-
(2010)
Microbes Environ
, vol.25
, pp. 156-163
-
-
Mayumi, D.1
Yoshimoto, T.2
Uchiyama, H.3
Nomura, N.4
Nakajima-Kambe, T.5
-
81
-
-
0036785866
-
Nitrogen input together with ecosystem nitrogen enrichment predict nitrate leaching from European forests
-
McDonald JA, Dise NB, Matzner E, Armbruster M, Gundersen P, Forsius M (2002) Nitrogen input together with ecosystem nitrogen enrichment predict nitrate leaching from European forests. Glob Change Biol 8: 1028-1033.
-
(2002)
Glob Change Biol
, vol.8
, pp. 1028-1033
-
-
McDonald, J.A.1
Dise, N.B.2
Matzner, E.3
Armbruster, M.4
Gundersen, P.5
Forsius, M.6
-
82
-
-
0038656384
-
Ammonia-oxidizing bacteria along meadow-to-forest transects in the Oregon cascade mountains
-
Mintie AT, Heichen RS, Cromack K, Myrold DD, Bottomley PJ (2003) Ammonia-oxidizing bacteria along meadow-to-forest transects in the Oregon cascade mountains. Appl Environ Microbiol 69: 3129-3136.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 3129-3136
-
-
Mintie, A.T.1
Heichen, R.S.2
Cromack, K.3
Myrold, D.D.4
Bottomley, P.J.5
-
83
-
-
0031959006
-
Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
-
Muyzer G, Smalla K (1998) Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie van Leeuwenhoek 73: 127-141.
-
(1998)
Antonie Van Leeuwenhoek
, vol.73
, pp. 127-141
-
-
Muyzer, G.1
Smalla, K.2
-
84
-
-
7044236288
-
Breaks in the cycle: dissolved organic nitrogen in terrestrial ecosystems
-
Neff JC, Chapin FS, Vitousek PM (2003) Breaks in the cycle: dissolved organic nitrogen in terrestrial ecosystems. Front Ecol Environ 1: 205-211.
-
(2003)
Front Ecol Environ
, vol.1
, pp. 205-211
-
-
Neff, J.C.1
Chapin, F.S.2
Vitousek, P.M.3
-
85
-
-
52949144888
-
The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling
-
Nemergut DR, Townsend AR, Sattin SR, Freeman KR, Fierer N, Neff JC, Bowman WD, Schadt CW, Weintraub MN, Schmidt SK (2008) The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling. Environ Microbiol 10: 3093-3105.
-
(2008)
Environ Microbiol
, vol.10
, pp. 3093-3105
-
-
Nemergut, D.R.1
Townsend, A.R.2
Sattin, S.R.3
Freeman, K.R.4
Fierer, N.5
Neff, J.C.6
Bowman, W.D.7
Schadt, C.W.8
Weintraub, M.N.9
Schmidt, S.K.10
-
86
-
-
33646497904
-
Ammonia-oxidising Crenarchaeota: important players in the nitrogen cycle?
-
Nicol GW, Schleper C (2006) Ammonia-oxidising Crenarchaeota: important players in the nitrogen cycle? Trends Microbiol 14: 207-212.
-
(2006)
Trends Microbiol
, vol.14
, pp. 207-212
-
-
Nicol, G.W.1
Schleper, C.2
-
87
-
-
52949137846
-
The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria
-
Nicol GW, Leininger S, Schleper C, Prosser JI (2008) The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria. Environ Microbiol 10: 2966-2978.
-
(2008)
Environ Microbiol
, vol.10
, pp. 2966-2978
-
-
Nicol, G.W.1
Leininger, S.2
Schleper, C.3
Prosser, J.I.4
-
88
-
-
0021890339
-
The ammonium hypothesis: an additional explanation to the forest dieback in Europe
-
Nihlgård B (1985) The ammonium hypothesis: an additional explanation to the forest dieback in Europe. Ambio 14: 2-8.
-
(1985)
Ambio
, vol.14
, pp. 2-8
-
-
Nihlgård, B.1
-
89
-
-
70349928983
-
Archaeal diversity of upland rice field soils assessed by the terminal restriction fragment length polymorphism method combined with real time quantitative-PCR and a clone library analysis
-
Nishizawa T, Komatsuzaki M, Kaneko N, Ohta H (2008) Archaeal diversity of upland rice field soils assessed by the terminal restriction fragment length polymorphism method combined with real time quantitative-PCR and a clone library analysis. Microbes Environ 23: 237-243.
-
(2008)
Microbes Environ
, vol.23
, pp. 237-243
-
-
Nishizawa, T.1
Komatsuzaki, M.2
Kaneko, N.3
Ohta, H.4
-
90
-
-
77957023385
-
Molecular characterization of fungal communities in non-tilled, cover-cropped upland rice field soils
-
Nishizawa T, Zhaorigetu, Komatsuzaki M, Sato Y, Kaneko N, Ohta H (2010) Molecular characterization of fungal communities in non-tilled, cover-cropped upland rice field soils. Microbes Environ 25: 204-210.
-
(2010)
Microbes Environ
, vol.25
, pp. 204-210
-
-
Nishizawa, T.1
Zhaorigetu2
Komatsuzaki, M.3
Sato, Y.4
Kaneko, N.5
Ohta, H.6
-
91
-
-
22044454258
-
Presence of Nitrosospira cluster 2 bacteria corresponds to N transformation rates in nine acid Scots pine forest soils
-
Nugroho RA, Röling WF, Laverman AM, Zoomer HR, Verhoef HA (2005) Presence of Nitrosospira cluster 2 bacteria corresponds to N transformation rates in nine acid Scots pine forest soils. FEMS Microbiol Ecol 53: 473-481.
-
(2005)
FEMS Microbiol Ecol
, vol.53
, pp. 473-481
-
-
Nugroho, R.A.1
Röling, W.F.2
Laverman, A.M.3
Zoomer, H.R.4
Verhoef, H.A.5
-
92
-
-
33646082509
-
Net nitrification rate and presence of Nitrosospira cluster 2 in acid coniferous forest soils appear to be tree species specific
-
Nugroho RA, Röling WF, Laverman AM, Verhoef HA (2006) Net nitrification rate and presence of Nitrosospira cluster 2 in acid coniferous forest soils appear to be tree species specific. Soil Biol Biochem 38: 1166-1171.
-
(2006)
Soil Biol Biochem
, vol.38
, pp. 1166-1171
-
-
Nugroho, R.A.1
Röling, W.F.2
Laverman, A.M.3
Verhoef, H.A.4
-
93
-
-
69949127231
-
Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene
-
Offre P, Prosser JI, Nicol GW (2009) Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene. FEMS Microbiol Ecol 70: 99-108.
-
(2009)
FEMS Microbiol Ecol
, vol.70
, pp. 99-108
-
-
Offre, P.1
Prosser, J.I.2
Nicol, G.W.3
-
94
-
-
0034748408
-
Comparative evaluation on nitrogen saturation of forest catchments in Japan and Northeastern United States
-
Ohte N, Mitchell M, Shibata H, Tokuchi N, Toda H, Iwatsubo G (2001) Comparative evaluation on nitrogen saturation of forest catchments in Japan and Northeastern United States. Water Air Soil Poll 130: 649-654.
-
(2001)
Water Air Soil Poll
, vol.130
, pp. 649-654
-
-
Ohte, N.1
Mitchell, M.2
Shibata, H.3
Tokuchi, N.4
Toda, H.5
Iwatsubo, G.6
-
95
-
-
0037442766
-
Episodic increases in nitrate concentrations in streamwater due to the partial dieback of a pine forest in Japan: runoff generation processes control seasonality
-
Ohte N, Tokuchi N, Katsuyama M, Hobara S, Asano Y, Koba K (2003) Episodic increases in nitrate concentrations in streamwater due to the partial dieback of a pine forest in Japan: runoff generation processes control seasonality. Hydrol Process 17: 237-249.
-
(2003)
Hydrol Process
, vol.17
, pp. 237-249
-
-
Ohte, N.1
Tokuchi, N.2
Katsuyama, M.3
Hobara, S.4
Asano, Y.5
Koba, K.6
-
96
-
-
77956621026
-
Seasonal patterns of nitrate discharge from forested catchments: information derived from Japanese case studies
-
Ohte N, Tokuchi N, Fujimoto M (2010) Seasonal patterns of nitrate discharge from forested catchments: information derived from Japanese case studies. Geogr Compass 4: 1358-1376.
-
(2010)
Geogr Compass
, vol.4
, pp. 1358-1376
-
-
Ohte, N.1
Tokuchi, N.2
Fujimoto, M.3
-
97
-
-
2342655672
-
Application of real-time PCR to study effects of ammonium on population size of ammonia-oxidizing bacteria in soil
-
Okano Y, Hristova KR, Leutenegger CM, Jackson LE, Denison RF, Gebreyesus B, Lebauer D, Scow KM (2004) Application of real-time PCR to study effects of ammonium on population size of ammonia-oxidizing bacteria in soil. Appl Environ Microbiol 70: 1008-1016.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 1008-1016
-
-
Okano, Y.1
Hristova, K.R.2
Leutenegger, C.M.3
Jackson, L.E.4
Denison, R.F.5
Gebreyesus, B.6
Lebauer, D.7
Scow, K.M.8
-
98
-
-
56649102352
-
Community structure of soil bacteria in a tropical rainforest several years after fire
-
Otsuka S, Sudiana IM, Komori A, Isobe K, Deguchi S, Nishiyama M, Shimizu H, Senoo K (2008) Community structure of soil bacteria in a tropical rainforest several years after fire. Microbes Environ 23: 49-56.
-
(2008)
Microbes Environ
, vol.23
, pp. 49-56
-
-
Otsuka, S.1
Sudiana, I.M.2
Komori, A.3
Isobe, K.4
Deguchi, S.5
Nishiyama, M.6
Shimizu, H.7
Senoo, K.8
-
100
-
-
0027331046
-
Autotrophic and heterotrophic nitrification in acidic forest and native grassland soils
-
Pennington PI, Ellis RC (1993) Autotrophic and heterotrophic nitrification in acidic forest and native grassland soils. Soil Biol Biochem 25: 1399-1408.
-
(1993)
Soil Biol Biochem
, vol.25
, pp. 1399-1408
-
-
Pennington, P.I.1
Ellis, R.C.2
-
101
-
-
0037165159
-
Nitrogen loss from unpolluted South American forests mainly via dissolved organic compounds
-
Perakis SS, Hedin LO (2002) Nitrogen loss from unpolluted South American forests mainly via dissolved organic compounds. Nature 415: 416-419.
-
(2002)
Nature
, vol.415
, pp. 416-419
-
-
Perakis, S.S.1
Hedin, L.O.2
-
102
-
-
13444262090
-
15N additions to an unpolluted temperate forest soil in Chile
-
15N additions to an unpolluted temperate forest soil in Chile. Ecology 86: 96-105.
-
(2005)
Ecology
, vol.86
, pp. 96-105
-
-
Perakis, S.S.1
Compton, J.E.2
Hedin, L.O.3
-
103
-
-
20444448894
-
Finding the missing link between diversity and activity using denitrifying bacteria as a model functional community
-
Philippot L, Hallin S (2005) Finding the missing link between diversity and activity using denitrifying bacteria as a model functional community. Curr Opin Microbiol 8: 234-239.
-
(2005)
Curr Opin Microbiol
, vol.8
, pp. 234-239
-
-
Philippot, L.1
Hallin, S.2
-
104
-
-
65449162401
-
The ecology of nitrifying bacteria
-
H. Bothe, S. J. Ferguson, and W. E. Newton (Eds.), Amsterdam: Elsevier
-
Prosser JI (2007) The ecology of nitrifying bacteria. In: Bothe H, Ferguson SJ, Newton WE (eds) Biology of the nitrogen cycle. Elsevier, Amsterdam, pp 223-243.
-
(2007)
Biology of the Nitrogen Cycle
, pp. 223-243
-
-
Prosser, J.I.1
-
105
-
-
0141502465
-
16S rRNA and amoA-based phylogeny of 12 novel betaproteobacterial ammonia-oxidizing isolates: extension of the dataset and proposal of a new lineage within the nitrosomonads
-
Purkhold U, Wagner M, Timmermann G, Pommerening-Röser A, Koops H (2003) 16S rRNA and amoA-based phylogeny of 12 novel betaproteobacterial ammonia-oxidizing isolates: extension of the dataset and proposal of a new lineage within the nitrosomonads. Int J Syst Evol Microb 53: 1485-1494.
-
(2003)
Int J Syst Evol Microb
, vol.53
, pp. 1485-1494
-
-
Purkhold, U.1
Wagner, M.2
Timmermann, G.3
Pommerening-Röser, A.4
Koops, H.5
-
106
-
-
0034123066
-
Monitoring complex bacterial communities using culture-independent molecular techniques: application to soil environment
-
Ranjard L, Poly F, Nazaret S (2000) Monitoring complex bacterial communities using culture-independent molecular techniques: application to soil environment. Res Microbiol 151: 167-177.
-
(2000)
Res Microbiol
, vol.151
, pp. 167-177
-
-
Ranjard, L.1
Poly, F.2
Nazaret, S.3
-
107
-
-
60349111840
-
Global nitrogen deposition and carbon sinks
-
Reay DS, Dentener F, Smith P, Grace J, Feely RA (2008) Global nitrogen deposition and carbon sinks. Nat Geosci 1: 430-437.
-
(2008)
Nat Geosci
, vol.1
, pp. 430-437
-
-
Reay, D.S.1
Dentener, F.2
Smith, P.3
Grace, J.4
Feely, R.A.5
-
108
-
-
0032416742
-
Nitrification in organic and mineral soil layers in coniferous forests in response to acidity
-
Rudebeck A, Persson T (1998) Nitrification in organic and mineral soil layers in coniferous forests in response to acidity. Environ Pollut 102: 377-383.
-
(1998)
Environ Pollut
, vol.102
, pp. 377-383
-
-
Rudebeck, A.1
Persson, T.2
-
109
-
-
68949145167
-
Identification of novel Betaproteobacteria in a succinate-assimilating population in denitrifying rice paddy soil by using stable isotope probing
-
Saito T, Ishii S, Otsuka S, Nishiyama M, Senoo K (2008) Identification of novel Betaproteobacteria in a succinate-assimilating population in denitrifying rice paddy soil by using stable isotope probing. Microbes Environ 23: 192-200.
-
(2008)
Microbes Environ
, vol.23
, pp. 192-200
-
-
Saito, T.1
Ishii, S.2
Otsuka, S.3
Nishiyama, M.4
Senoo, K.5
-
110
-
-
1642465463
-
Nitrogen mineralization: challenges of a changing paradigm
-
Schimel JP, Bennett J (2004) Nitrogen mineralization: challenges of a changing paradigm. Ecology 85: 591-602.
-
(2004)
Ecology
, vol.85
, pp. 591-602
-
-
Schimel, J.P.1
Bennett, J.2
-
111
-
-
0001044345
-
Identification of heterotrophic nitrification in a Sierran forest soil
-
Schimel JP, Firestone MK, Killham KS (1984) Identification of heterotrophic nitrification in a Sierran forest soil. Appl Environ Microbiol 48: 802-806.
-
(1984)
Appl Environ Microbiol
, vol.48
, pp. 802-806
-
-
Schimel, J.P.1
Firestone, M.K.2
Killham, K.S.3
-
112
-
-
0024874183
-
Spatial and temporal effects on plant-microbial competition for inorganic nitrogen in a california annual grassland
-
Schimel JP, Jackson LE, Firestone MK (1989) Spatial and temporal effects on plant-microbial competition for inorganic nitrogen in a california annual grassland. Soil Biol Biochem 21: 1059-1066.
-
(1989)
Soil Biol Biochem
, vol.21
, pp. 1059-1066
-
-
Schimel, J.P.1
Jackson, L.E.2
Firestone, M.K.3
-
113
-
-
27744537545
-
Microbial community composition and soil nitrogen cycling: is there really a connection?
-
In: Bardgett RD, Usher MB, Hopkins DW (eds) Cambridge University Press, Cambridge
-
Schimel JP, Bennet J, Fierer N (2005) Microbial community composition and soil nitrogen cycling: is there really a connection? In: Bardgett RD, Usher MB, Hopkins DW (eds) Biological diversity and function in soil. Cambridge University Press, Cambridge, pp 171-188.
-
(2005)
Biological diversity and function in soil
, pp. 171-188
-
-
Schimel, J.P.1
Bennet, J.2
Fierer, N.3
-
114
-
-
77956095401
-
Ammonia oxidation: different niches for bacteria and archaea?
-
Schleper C (2010) Ammonia oxidation: different niches for bacteria and archaea? ISME J 4: 1092-1094.
-
(2010)
ISME J
, vol.4
, pp. 1092-1094
-
-
Schleper, C.1
-
116
-
-
0000517420
-
Autotrophic nitrifying bacteria
-
J. M. Mickelson, M. Weaver, S. Angle, P. Bottomley, D. Bezdicek, and S. Smith (Eds.), Madison: American Society of Agronomy
-
Schmidt EL, Belser LW (1994) Autotrophic nitrifying bacteria. In: Mickelson JM, Weaver M, Angle S, Bottomley P, Bezdicek D, Smith S (eds) Methods of soil analysis. American Society of Agronomy, Madison, pp 160-177.
-
(1994)
Methods of Soil Analysis
, pp. 160-177
-
-
Schmidt, E.L.1
Belser, L.W.2
-
117
-
-
34447517264
-
PCR profiling of ammonia-oxidizer communities in acidic soils subjected to nitrogen and sulphur deposition
-
Schmidt CS, Hultman KA, Robinson D, Killham K, Prosser JI (2007) PCR profiling of ammonia-oxidizer communities in acidic soils subjected to nitrogen and sulphur deposition. FEMS Microbiol Ecol 61: 305-316.
-
(2007)
FEMS Microbiol Ecol
, vol.61
, pp. 305-316
-
-
Schmidt, C.S.1
Hultman, K.A.2
Robinson, D.3
Killham, K.4
Prosser, J.I.5
-
118
-
-
53649106195
-
Next-generation DNA sequencing
-
Shendure J, Ji H (2008) Next-generation DNA sequencing. Nat Biotechnol 26: 1135-1145.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
119
-
-
0030619115
-
High rates of nitrification and nitrate turnover in undisturbed coniferous forests
-
Stark JM, Hart SC (1997) High rates of nitrification and nitrate turnover in undisturbed coniferous forests. Nature 385: 61-64.
-
(1997)
Nature
, vol.385
, pp. 61-64
-
-
Stark, J.M.1
Hart, S.C.2
-
120
-
-
0000905246
-
Heterotrophic nitrification in an acid forest soil and by an acid-tolerant fungus
-
Stroo HF, Klein TM, Alexander M (1986) Heterotrophic nitrification in an acid forest soil and by an acid-tolerant fungus. Appl Environ Microbiol 52: 1107-1111.
-
(1986)
Appl Environ Microbiol
, vol.52
, pp. 1107-1111
-
-
Stroo, H.F.1
Klein, T.M.2
Alexander, M.3
-
121
-
-
70350449436
-
Evidence for biological nitrification inhibition in Brachiaria pastures
-
Subbarao GV, Nakahara K, Hurtado MP, Ono H, Moreta DE, Salcedo AF, Yoshihashi AT, Ishikawa T, Ishitani M, Ohnishi-Kameyama M, Yoshida M, Rondon M, Rao IM, Lascano CE, Berry WL, Ito O (2009) Evidence for biological nitrification inhibition in Brachiaria pastures. Proc Natl Acad Sci USA 106: 17302-17307.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 17302-17307
-
-
Subbarao, G.V.1
Nakahara, K.2
Hurtado, M.P.3
Ono, H.4
Moreta, D.E.5
Salcedo, A.F.6
Yoshihashi, A.T.7
Ishikawa, T.8
Ishitani, M.9
Ohnishi-Kameyama, M.10
Yoshida, M.11
Rondon, M.12
Rao, I.M.13
Lascano, C.E.14
Berry, W.L.15
Ito, O.16
-
122
-
-
63849094649
-
Plant and microbial controls on nitrogen retention and loss in a humid tropical forest
-
Templer PH, Silver WL, Pett-Ridge J, DeAngelis K, Firestone MK (2008) Plant and microbial controls on nitrogen retention and loss in a humid tropical forest. Ecology 89: 3030-3040.
-
(2008)
Ecology
, vol.89
, pp. 3030-3040
-
-
Templer, P.H.1
Silver, W.L.2
Pett-Ridge, J.3
Deangelis, K.4
Firestone, M.K.5
-
123
-
-
0028079873
-
Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria
-
Teske A, Alm E, Regan JM, Toze S, Rittmann BE, Stahl DA (1994) Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria. J Bacteriol 176: 6623-6630.
-
(1994)
J Bacteriol
, vol.176
, pp. 6623-6630
-
-
Teske, A.1
Alm, E.2
Regan, J.M.3
Toze, S.4
Rittmann, B.E.5
Stahl, D.A.6
-
124
-
-
0028826869
-
A correlative evaluation of nitrogen cycling in the forest ecosystems of the EC projects NITREX and EXMAN
-
Tietema A, Beier C (1995) A correlative evaluation of nitrogen cycling in the forest ecosystems of the EC projects NITREX and EXMAN. For Ecol Manage 71: 143-151.
-
(1995)
For Ecol Manage
, vol.71
, pp. 143-151
-
-
Tietema, A.1
Beier, C.2
-
125
-
-
0026452892
-
Nitrate production in nitrogen-saturated acid forest soils: vertical distribution and characteristics
-
Tietema A, De Boer W, Riemer L, Verstraten J (1992) Nitrate production in nitrogen-saturated acid forest soils: vertical distribution and characteristics. Soil Biol Biochem 24: 235-240.
-
(1992)
Soil Biol Biochem
, vol.24
, pp. 235-240
-
-
Tietema, A.1
de Boer, W.2
Riemer, L.3
Verstraten, J.4
-
126
-
-
28644435323
-
Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
-
Treusch AH, Leininger S, Kletzin A, Schuster SC, Klenk H, Schleper C (2005) Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ Microbiol 7: 1985-1995.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1985-1995
-
-
Treusch, A.H.1
Leininger, S.2
Kletzin, A.3
Schuster, S.C.4
Klenk, H.5
Schleper, C.6
-
127
-
-
20244376755
-
Comparative metagenomics of microbial communities
-
Tringe SG, von Mering C, Kobayashi A, Salamov AA, Chen K, Chang HW, Podar M, Short JM, Mathur EJ, Detter JC, Bork P, Hugenholtz P, Rubin EM (2005) Comparative metagenomics of microbial communities. Science 308: 554-557.
-
(2005)
Science
, vol.308
, pp. 554-557
-
-
Tringe, S.G.1
von Mering, C.2
Kobayashi, A.3
Salamov, A.A.4
Chen, K.5
Chang, H.W.6
Podar, M.7
Short, J.M.8
Mathur, E.J.9
Detter, J.C.10
Bork, P.11
Hugenholtz, P.12
Rubin, E.M.13
-
128
-
-
49649087440
-
Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome
-
Urich T, Lanzén A, Qi J, Huson DH, Schleper C, Schuster SC (2008) Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome. PloS One 3: e2527.
-
(2008)
PloS One
, vol.3
-
-
Urich, T.1
Lanzén, A.2
Qi, J.3
Huson, D.H.4
Schleper, C.5
Schuster, S.C.6
-
129
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen I, Nelson KE, Nelson W, Fouts DE, Levy S, Knap AH, Lomas MW, Nealson K, White O, Peterson J, Hoffman J, Parsons R, Baden-Tillson H, Pfannkoch C, Rogers Y, Smith HO (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304: 66-74.
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
Wu, D.7
Paulsen, I.8
Nelson, K.E.9
Nelson, W.10
Fouts, D.E.11
Levy, S.12
Knap, A.H.13
Lomas, M.W.14
Nealson, K.15
White, O.16
Peterson, J.17
Hoffman, J.18
Parsons, R.19
Baden-Tillson, H.20
Pfannkoch, C.21
Rogers, Y.22
Smith, H.O.23
more..
-
130
-
-
3042761358
-
Gross nitrogen process rates in temperate forest soils exhibiting symptoms of nitrogen saturation
-
Venterea R, Groffman P, Verchot L, Magill A, Aber J (2004) Gross nitrogen process rates in temperate forest soils exhibiting symptoms of nitrogen saturation. For Ecol Manage 196: 129-142.
-
(2004)
For Ecol Manage
, vol.196
, pp. 129-142
-
-
Venterea, R.1
Groffman, P.2
Verchot, L.3
Magill, A.4
Aber, J.5
-
131
-
-
0030619764
-
Nutrient limitation and soil development: experimental test of a biogeochemical theory
-
Vitousek PM, Farrington H (1997) Nutrient limitation and soil development: experimental test of a biogeochemical theory. Biogeochemistry 37: 63-75.
-
(1997)
Biogeochemistry
, vol.37
, pp. 63-75
-
-
Vitousek, P.M.1
Farrington, H.2
-
132
-
-
0026312019
-
Nitrogen limitation on land and in the sea: how can it occur?
-
Vitousek P, Howarth R (1991) Nitrogen limitation on land and in the sea: how can it occur? Biogeochemistry 13: 87-115.
-
(1991)
Biogeochemistry
, vol.13
, pp. 87-115
-
-
Vitousek, P.1
Howarth, R.2
-
133
-
-
3242789605
-
Microbial community response to nitrogen deposition in northern forest ecosystems
-
Waldrop MP, Zak DR, Sinsabaugh RL (2004) Microbial community response to nitrogen deposition in northern forest ecosystems. Soil Biol Biochem 36: 1443-1451.
-
(2004)
Soil Biol Biochem
, vol.36
, pp. 1443-1451
-
-
Waldrop, M.P.1
Zak, D.R.2
Sinsabaugh, R.L.3
-
134
-
-
77952739182
-
Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea
-
Walker CB, de La Torre JR, Klotz MG, Urakawa H, Pinel N, Arp DJ, Brochier-Armanet C, Chain PS, Chan PP, Gollabgir A, Hemp J, Hügler M, Karr EA, Könneke M, Shin M, Lawton TJ, Lowe T, Martens-Habbena W, Sayavedra-Soto LA, Lang D, Sievert SM, Rosenzweig AC, Manning G, Stahl DA (2010) Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea. Proc Natl Acad Sci USA 107: 8818-8823.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 8818-8823
-
-
Walker, C.B.1
de la Torre, J.R.2
Klotz, M.G.3
Urakawa, H.4
Pinel, N.5
Arp, D.J.6
Brochier-Armanet, C.7
Chain, P.S.8
Chan, P.P.9
Gollabgir, A.10
Hemp, J.11
Hügler, M.12
Karr, E.A.13
Könneke, M.14
Shin, M.15
Lawton, T.J.16
Lowe, T.17
Martens-Habbena, W.18
Sayavedra-Soto, L.A.19
Lang, D.20
Sievert, S.M.21
Rosenzweig, A.C.22
Manning, G.23
Stahl, D.A.24
more..
-
135
-
-
17844403255
-
Links between ammonia oxidizer species composition, functional diversity and nitrification kinetics in grassland soils
-
Webster G, Embley TM, Freitag TE, Smith Z, Prosser JI (2005) Links between ammonia oxidizer species composition, functional diversity and nitrification kinetics in grassland soils. Environ Microbiol 7: 676-684.
-
(2005)
Environ Microbiol
, vol.7
, pp. 676-684
-
-
Webster, G.1
Embley, T.M.2
Freitag, T.E.3
Smith, Z.4
Prosser, J.I.5
-
136
-
-
0000666068
-
Mono-oxygenase and free radical mechanisms for biological ammonia oxidation
-
J. A. Cole and S. J. Ferguson (Eds.), Cambridge: Cambridge University Press
-
Wood PM (1987) Mono-oxygenase and free radical mechanisms for biological ammonia oxidation. In: Cole JA, Ferguson SJ (eds) The nitrogen and sulphur cycles proceeding symposium 42 of the society for general microbiology. Cambridge University Press, Cambridge, pp 219-243.
-
(1987)
The Nitrogen and Sulphur Cycles Proceeding Symposium 42 of the Society for General Microbiology
, pp. 219-243
-
-
Wood, P.M.1
-
137
-
-
33747596691
-
Archaeal nitrification in the ocean
-
Wuchter C, Abbas B, Coolen MJ, Herfort L, van Bleijswijk J, Timmers P, Strous M, Teira E, Herndl GJ, Middelburg JJ, Schouten S, Sinninghe Damsté JS (2006) Archaeal nitrification in the ocean. Proc Natl Acad Sci USA 103: 12317-12322.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12317-12322
-
-
Wuchter, C.1
Abbas, B.2
Coolen, M.J.3
Herfort, L.4
van Bleijswijk, J.5
Timmers, P.6
Strous, M.7
Teira, E.8
Herndl, G.J.9
Middelburg, J.J.10
Schouten, S.11
Sinninghe Damsté, J.S.12
-
139
-
-
0031456471
-
Cell biology and molecular basis of denitrification
-
Zumft WG (1997) Cell biology and molecular basis of denitrification. Microbiol Mol Biol Rev 61: 533-616.
-
(1997)
Microbiol Mol Biol Rev
, vol.61
, pp. 533-616
-
-
Zumft, W.G.1
|