-
1
-
-
0031013145
-
Molecular phylogeny of Archaea from soil
-
Bintrim, S.B., T.J. Donohue, J. Handelsman, G.P. Roberts, and R.M. Goodman. 1997. Molecular phylogeny of Archaea from soil. Proc. Natl. Acad. Sci. USA 94:277-282.
-
(1997)
Proc. Natl. Acad. Sci. USA.
, vol.94
, pp. 277-282
-
-
Bintrim, S.B.1
Donohue, T.J.2
Handelsman, J.3
Roberts, G.P.4
Goodman, R.M.5
-
2
-
-
0000947903
-
Non-parametric estimation of the number of classes in a population
-
Chao, A. 1984. Non-parametric estimation of the number of classes in a population. Scand. J. Stat. 11:783-791.
-
(1984)
Scand. J. Stat.
, vol.11
, pp. 783-791
-
-
Chao, A.1
-
3
-
-
17644372762
-
Semi-automated genetic analyses of soil microbial communities: Comparison of T-RFLP and RISA based on descriptive and discriminative statistical approaches
-
Hartmann, M., B. Frey, R. Kölliker, and F. Widmer. 2005. Semi-automated genetic analyses of soil microbial communities: comparison of T-RFLP and RISA based on descriptive and discriminative statistical approaches. J. Microbiol. Methods 61:349-360.
-
(2005)
J. Microbiol. Methods.
, vol.61
, pp. 349-360
-
-
Hartmann, M.1
Frey, B.2
Kölliker, R.3
Widmer, F.4
-
4
-
-
38049134986
-
Reliability for detecting composition and changes of microbial communities by T-RFLP genetic profiling
-
Hartmann, M., and F. Widmer. 2008. Reliability for detecting composition and changes of microbial communities by T-RFLP genetic profiling. FEMS Microbiol. Ecol. 63:249-260.
-
(2008)
FEMS Microbiol. Ecol.
, vol.63
, pp. 249-260
-
-
Hartmann, M.1
Widmer, F.2
-
5
-
-
41149153310
-
A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring
-
Hatzenpichler, R., E.V. Lebedeva, E. Spieck, K. Stoecker, A. Richter, H. Daims, and M. Wagner. 2008. A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring. Proc. Natl. Acad. Sci. USA 105:2134-2139.
-
(2008)
Proc. Natl. Acad. Sci. USA.
, vol.105
, pp. 2134-2139
-
-
Hatzenpichler, R.1
Lebedeva, E.V.2
Spieck, E.3
Stoecker, K.4
Richter, A.5
Daims, H.6
Wagner, M.7
-
7
-
-
68949114543
-
Evaluation of the effects of different additives in improving the DNA extraction yield and quality from andosol
-
Ikeda, S., H. Tsurumaru, S. Wakai, C. Noritake, K. Fujishiro, M. Akasaka, and K. Ando. 2008. Evaluation of the effects of different additives in improving the DNA extraction yield and quality from andosol. Microbes Environ. 23:159-166.
-
(2008)
Microbes Environ.
, vol.23
, pp. 159-166
-
-
Ikeda, S.1
Tsurumaru, H.2
Wakai, S.3
Noritake, C.4
Fujishiro, K.5
Akasaka, M.6
Ando, K.7
-
8
-
-
0035432220
-
Optimization of annealing temperature to reduce bias caused by a primer mismatch in multitemplate PCR
-
Ishii, K., and M. Fukui. 2001. Optimization of annealing temperature to reduce bias caused by a primer mismatch in multitemplate PCR. Appl. Environ. Microbiol. 67:3753-3755.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 3753-3755
-
-
Ishii, K.1
Fukui, M.2
-
9
-
-
0027745825
-
Effect of PCR conditions on the formation of heteroduplex and single-stranded DNA products in the amplification of bacterial ribosomal DNA spacer regions
-
Jensen, M.A., and N. Straus. 1993. Effect of PCR conditions on the formation of heteroduplex and single-stranded DNA products in the amplification of bacterial ribosomal DNA spacer regions. PCR Methods Appl. 3:186-194.
-
(1993)
PCR Methods Appl.
, vol.3
, pp. 186-194
-
-
Jensen, M.A.1
Straus, N.2
-
10
-
-
58149397103
-
Evaluation of quenching probe (QProbe)- PCR assay for quantification of the koi herpes virus (KHV)
-
Kamimura, S., T. Hagi, S. Kurata, K. Takatsu, H. Sogo, T. Hoshino, and K. Nakamura. 2007. Evaluation of quenching probe (QProbe)- PCR assay for quantification of the koi herpes virus (KHV). Microbes Environ. 22:223-231.
-
(2007)
Microbes Environ
, vol.22
, pp. 223-231
-
-
Kamimura, S.1
Hagi, T.2
Kurata, S.3
Takatsu, K.4
Sogo, H.5
Hoshino, T.6
Nakamura, K.7
-
11
-
-
0344629203
-
Bias and artifacts in multitemplate polymerase chain reactions (PCR)
-
Kanagawa, T. 2003. Bias and artifacts in multitemplate polymerase chain reactions (PCR). J. Biosci. Bioeng. 96:317-323.
-
(2003)
J. Biosci. Bioeng.
, vol.96
, pp. 317-323
-
-
Kanagawa, T.1
-
12
-
-
0037728487
-
Variation between observed and true terminal restriction fragment length is dependent on true T-RF length and purine content
-
Kaplan, C.W., and C.L. Kitts. 2003. Variation between observed and true terminal restriction fragment length is dependent on true T-RF length and purine content. J. Microbiol. Methods 54:121-125.
-
(2003)
J. Microbiol. Methods.
, vol.54
, pp. 121-125
-
-
Kaplan, C.W.1
Kitts, C.L.2
-
13
-
-
0035869965
-
Fluorescent quenching-based quantitative detection of specific DNA/RNA using a BODIPY FL- labeled probe or primer
-
Kurata, S., T. Kanagawa, K. Yamada, M. Torimura, T. Yokomaku, Y. Kamagata, and R. Kurane. 2001. Fluorescent quenching-based quantitative detection of specific DNA/RNA using a BODIPY FL- labeled probe or primer. Nucleic Acids Res. 29:e34.
-
(2001)
Nucleic Acids Res
, vol.29
-
-
Kurata, S.1
Kanagawa, T.2
Yamada, K.3
Torimura, M.4
Yokomaku, T.5
Kamagata, Y.6
Kurane, R.7
-
14
-
-
10444268966
-
Reevaluation and reduction of a PCR bias caused by reannealing of templates
-
Kurata, S., T. Kanagawa, Y. Magariyama, K. Takatsu, K. Yamada, T. Yokomaku, and Y. Kamagata. 2004. Reevaluation and reduction of a PCR bias caused by reannealing of templates. Appl. Environ. Microbiol. 70:7545-7549.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 7545-7549
-
-
Kurata, S.1
Kanagawa, T.2
Magariyama, Y.3
Takatsu, K.4
Yamada, K.5
Yokomaku, T.6
Kamagata, Y.7
-
16
-
-
33747479446
-
Archaea predominate among ammonia-oxidizing prokaryotes in soils
-
Leininger, S., T. Urich, M. Schloter, L. Schwark, J. Oi, G.W. Nicol, J.I. Prosser, S.C. Schuster, and C. Schleper, 2006. Archaea predominate among ammonia-oxidizing prokaryotes in soils. Nature 442:806809.
-
(2006)
Nature
, vol.442
, pp. 806809
-
-
Leininger, S.1
Urich, T.2
Schloter, M.3
Schwark, L.4
Oi, J.5
Nicol, G.W.6
Prosser, J.I.7
Schuster, S.C.8
Schleper, C.9
-
17
-
-
0030661563
-
Characterization of microbial diversity by determining teminal restraiction fragment length polymorphism of genes encoding 16S rRNA
-
Liu, W.-T., T.L. Marsh, H. Cheng, and L.J. Forney, 1997. Characterization of microbial diversity by determining teminal restraiction fragment length polymorphism of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63:4516-4522.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4516-4522
-
-
Liu, W.-T.1
Marsh, T.L.2
Cheng, H.3
Forney, L.J.4
-
18
-
-
0037225001
-
Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts
-
Lueders, T., and M.W. Friedrich. 2003. Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts. Appl. Environ. Microbiol. 69:320-326.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 320-326
-
-
Lueders, T.1
Friedrich, M.W.2
-
19
-
-
0029967167
-
DNA rehybridization during PCR: The 'Cot effect' and its consequences
-
Mathieu-Daude, F., J. Welsh, T. Vogt, and M. McClelland. 1996. DNA rehybridization during PCR: the 'Cot effect' and its consequences. Nucleic Acids Res. 24:2080-2086.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 2080-2086
-
-
Mathieu-Daude, F.1
Welsh, J.2
Vogt, T.3
McClelland, M.4
-
20
-
-
51149111950
-
Distribution of cold-adapted ammonia-oxidizing microorganisms in the deep-ocean of the Northeastern Japan Sea
-
Nakagawa, T., K. Mori, C. Kato, R. Takahashi, and T. Tokuyama. 2007. Distribution of cold-adapted ammonia-oxidizing microorganisms in the deep-ocean of the Northeastern Japan Sea. Microbes Environ. 22:365-372.
-
(2007)
Microbes Environ
, vol.22
, pp. 365-372
-
-
Nakagawa, T.1
Mori, K.2
Kato, C.3
Takahashi, R.4
Tokuyama, T.5
-
21
-
-
0034547801
-
An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics
-
Osborn, A.M., E.R. Moore, and K.N. Timmis. 2000. An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environ. Microbiol. 2:39-50.
-
(2000)
Environ. Microbiol.
, vol.2
, pp. 39-50
-
-
Osborn, A.M.1
Moore, E.R.2
Timmis, K.N.3
-
22
-
-
33847298917
-
Variations in T-RFLP profiles with differing chemistries of fluorescent dyes used for labeling the PCR primers
-
Pandey, J., K. Ganesan, and R.K. Jain. 2007. Variations in T-RFLP profiles with differing chemistries of fluorescent dyes used for labeling the PCR primers. J. Microbiol. Methods 68:633-638.
-
(2007)
J. Microbiol. Methods.
, vol.68
, pp. 633-638
-
-
Pandey, J.1
Ganesan, K.2
Jain, R.K.3
-
23
-
-
0031711754
-
Bias in template-to-product ratios in multitemplate PCR
-
Polz, M.F., and C.M. Cavanaugh. 1998. Bias in template-to-product ratios in multitemplate PCR. Appl. Environ. Microbiol. 64:3724-3730.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3724-3730
-
-
Polz, M.F.1
Cavanaugh, C.M.2
-
24
-
-
42149138713
-
Nitrification in terrestrial hot springs of Iceland and Kamchatka
-
Reigstad, L.J., A. Richte, H. Daims, T. Urich, L. Schwark, and C. Schleper. 2008. Nitrification in terrestrial hot springs of Iceland and Kamchatka. FEMS Microbial. Ecol. 64:167-174.
-
(2008)
FEMS Microbial. Ecol.
, vol.64
, pp. 167-174
-
-
Reigstad, L.J.1
Richte, A.2
Daims, H.3
Urich, T.4
Schwark, L.5
Schleper, C.6
-
25
-
-
4644260588
-
Ecology and microbial structures of archaeal/bacterial strings-of-pearls communities and archaeal relatives thriving in cold sulfidic springs
-
Rudolph, C., C. Moissl, R. Henneberger, and R. Huber. 2004. Ecology and microbial structures of archaeal/bacterial strings-of-pearls communities and archaeal relatives thriving in cold sulfidic springs. FEMS Microbiol. Ecol. 50:1-11.
-
(2004)
FEMS Microbiol. Ecol.
, vol.50
, pp. 1-11
-
-
Rudolph, C.1
Moissl, C.2
Henneberger, R.3
Huber, R.4
-
26
-
-
52649180148
-
Broad distribution and phylogeny of anaerobic endophytes of cluster XIVa clostridia in plant species including crops
-
Saito, A., M. Kawahara, S. Ikeda, M. Ishimine, S. Akao, and K. Minamisawa. 2008. Broad distribution and phylogeny of anaerobic endophytes of cluster XIVa clostridia in plant species including crops. Microbes Environ. 23:73-80.
-
(2008)
Microbes Environ
, vol.23
, pp. 73-80
-
-
Saito, A.1
Kawahara, M.2
Ikeda, S.3
Ishimine, M.4
Akao, S.5
Minamisawa, K.6
-
27
-
-
0031680049
-
Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum
-
Schleper, C., E.F. DeLong, C.M. Preston, R.A. Feldman, K.Y. Wu, and R.V. Swanson. 1998. Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum. J. Bacteriol. 180:5003-5009.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 5003-5009
-
-
Schleper, C.1
Delong, E.F.2
Preston, C.M.3
Feldman, R.A.4
Wu, K.Y.5
Swanson, R.V.6
-
29
-
-
0003341851
-
Development and application of nucleic acid probes
-
E. Stackebrendt, and M. Goodfel- low (ed.) Wiley, Cichester, England
-
Stahl, D.A., and R. Amann. 1991. Development and application of nucleic acid probes. p. 205-248 In E. Stackebrendt, and M. Goodfel- low (ed.), Nucleic acid techniques in bacterial systematics. Wiley, Cichester, England.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 205-248
-
-
Stahl, D.A.1
Amann, R.2
-
30
-
-
0030067991
-
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
-
Suzuki, M.T., and S.J. Giovannoni. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62:625-630.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 625-630
-
-
Suzuki, M.T.1
Giovannoni, S.J.2
-
31
-
-
0031790538
-
Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity
-
Suzuki, M., M.S. Rappe, and S.J. Giovannoni. 1998. Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity. Appl. Environ. Microbiol. 64:4522-11529
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 4522-11529
-
-
Suzuki, M.1
Rappe, M.S.2
Giovannoni, S.J.3
-
32
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
-
Thompson, J.D., D.G. Higgins, and T.J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
33
-
-
0036566806
-
Heteroduplexes in mixed-template amplifications: Formation, consequence and elimination by 'reconditioning PCR'
-
Thompson, J.R., L.A. Marcelino, and M.F. Polz. 2002. Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'. Nucleic Acids Res. 30:2083-2088.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 2083-2088
-
-
Thompson, J.R.1
Marcelino, L.A.2
Polz, M.F.3
-
34
-
-
40349083715
-
Phylogenetic analysis of the archaeal community in an alkaline-saline soil of the former lake Tex- coco (Mexico)
-
Valenzuela-Encinas, C., I. Neria-González, R. Alcantara-Hernandez, J. Enríquez-Aragón, I. Estrada-Alvarado, C. Hernández- Rodriguez, L. Dendooven, and R. Marsch. 2008. Phylogenetic analysis of the archaeal community in an alkaline-saline soil of the former lake Tex- coco (Mexico). Extremophiles 12:247-254.
-
(2008)
Extremophiles
, vol.12
, pp. 247-254
-
-
Valenzuela-Encinas, C.1
Neria-González, I.2
Alcantara-Hernandez, R.3
Enríquez-Aragón, J.4
Estrada-Alvarado, I.5
Hernández-Rodriguez, C.6
Dendooven, L.7
Marsch, R.8
-
35
-
-
34548293679
-
Naïve bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang, Q., G.M. Garrity, J.M. Tiedje, and J.R. Cole. 2007. Naïve bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73:5261-5267.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
36
-
-
33644606606
-
Fast-GroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries
-
Yu, Y., M. Breitbart, P. McNairnie, and F. Rohwer. 2006. Fast- GroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries. BMC Bioiform. 7:57
-
(2006)
BMC Bioiform.
, vol.7
, pp. 57
-
-
Yu, Y.1
Breitbart, M.2
McNairnie, P.3
Rohwer, F.4
-
37
-
-
70349900215
-
Relationships between fungal biomass and nitrous oxide emission in upland rice soils under no tillage and cover cropping systems
-
Zhaorigetu, M. Komatsuzaki, Y. Sato, and H. Ohta. 2008. Relationships between fungal biomass and nitrous oxide emission in upland rice soils under no tillage and cover cropping systems. Microbes Environ. 23:201-208.
-
(2008)
Microbes Environ.
, vol.23
, pp. 201-208
-
-
Komatsuzaki, Z.M.1
Sato, Y.2
Ohta, H.3
|