-
1
-
-
0041350475
-
In situ distribution and activity of nitrifying bacteria in freshwater sediment
-
Altmann, D., P. Stief, R. Amann, D. de Beer, and A. Schramm. 2003. In situ distribution and activity of nitrifying bacteria in freshwater sediment. Environ. Microbiol. 5:798-803.
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 798-803
-
-
Altmann, D.1
Stief, P.2
Amann, R.3
De Beer, D.4
Schramm, A.5
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0036682224
-
PRIMROSE: A computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database
-
Ashelford, K. E., A. J. Weightman, and J. C. Fry. 2002. PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database. Nucleic Acids Res. 30:3481-3489.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3481-3489
-
-
Ashelford, K.E.1
Weightman, A.J.2
Fry, J.C.3
-
4
-
-
0042197522
-
Effects of temperature and fertilizer on activity and community structure of soil ammonia oxidizers
-
Avrahami, S., W. Liesack, and R. Conrad. 2003. Effects of temperature and fertilizer on activity and community structure of soil ammonia oxidizers. Environ. Microbiol. 5:691-705.
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 691-705
-
-
Avrahami, S.1
Liesack, W.2
Conrad, R.3
-
5
-
-
0036692251
-
Diversity of 16S rDNA and naphthalene dioxygenase genes from coal-tar-waste-contaminated aquifer waters
-
Bakermans, C., and E. L. Madsen. 2002. Diversity of 16S rDNA and naphthalene dioxygenase genes from coal-tar-waste-contaminated aquifer waters. Microb. Ecol. 44:95-106.
-
(2002)
Microb. Ecol.
, vol.44
, pp. 95-106
-
-
Bakermans, C.1
Madsen, E.L.2
-
6
-
-
0036051360
-
Immunological detection of Nitrospira-like bacteria in various soils
-
Bartosch, S., C. Hartwig, E. Spieck, and E. Bock. 2002. Immunological detection of Nitrospira-like bacteria in various soils. Microb. Ecol. 43:26-33.
-
(2002)
Microb. Ecol.
, vol.43
, pp. 26-33
-
-
Bartosch, S.1
Hartwig, C.2
Spieck, E.3
Bock, E.4
-
7
-
-
0025190920
-
A new facultatively nitrite oxidizing bacterium, Nitrobacter vulgaris sp nov
-
Bock, E., H. P. Koops, U. C. Moller, and M. Rudert. 1990. A new facultatively nitrite oxidizing bacterium, Nitrobacter vulgaris sp nov. Arch. Microbiol. 153:105-110.
-
(1990)
Arch. Microbiol.
, vol.153
, pp. 105-110
-
-
Bock, E.1
Koops, H.P.2
Moller, U.C.3
Rudert, M.4
-
8
-
-
0032883808
-
Identification of some of the major groups of bacteria in efficient and non-efficient biological phosphorus removal activated sludge systems
-
Bond, P. L., R. Erhart, M. Wagner, J. Keller, and L. L. Blackall. 1999. Identification of some of the major groups of bacteria in efficient and non-efficient biological phosphorus removal activated sludge systems. Appl. Environ. Microbiol. 65:4077-4084.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 4077-4084
-
-
Bond, P.L.1
Erhart, R.2
Wagner, M.3
Keller, J.4
Blackall, L.L.5
-
9
-
-
0036276617
-
Influence of different cultivars on populations of ammonia-oxidizing bacteria in the root environment of rice
-
Briones, A. M., S. Okabe, Y. Umemiya, N. B. Ramsing, W. Reichardt, and H. Okuyama. 2002. Influence of different cultivars on populations of ammonia-oxidizing bacteria in the root environment of rice. Appl. Environ. Microbiol. 68:3067-3075.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 3067-3075
-
-
Briones, A.M.1
Okabe, S.2
Umemiya, Y.3
Ramsing, N.B.4
Reichardt, W.5
Okuyama, H.6
-
10
-
-
18744372402
-
Recovery of novel bacterial diversity from a forested wetland impacted by reject coal
-
Brofft, J. E., J. V. McArthur, and L. J. Shimkets. 2002. Recovery of novel bacterial diversity from a forested wetland impacted by reject coal. Environ. Microbiol. 4:764-769.
-
(2002)
Environ. Microbiol.
, vol.4
, pp. 764-769
-
-
Brofft, J.E.1
McArthur, J.V.2
Shimkets, L.J.3
-
11
-
-
0033015223
-
Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils
-
Bruns, M. A., J. R. Stephen, G. A. Kowalchuk, J. I. Prosser, and E. A. Paul. 1999. Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils. Appl. Environ. Microbiol. 65:2994-3000.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 2994-3000
-
-
Bruns, M.A.1
Stephen, J.R.2
Kowalchuk, G.A.3
Prosser, J.I.4
Paul, E.A.5
-
13
-
-
0035656733
-
Identification of bacteria responsible for ammonia oxidation in freshwater aquaria
-
Burrell, P. C., C. M. Phalen, and T. A. Hovanec. 2001. Identification of bacteria responsible for ammonia oxidation in freshwater aquaria. Appl. Environ. Microbiol. 67:5791-5800.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 5791-5800
-
-
Burrell, P.C.1
Phalen, C.M.2
Hovanec, T.A.3
-
14
-
-
2142689183
-
Nitrification and nitrifying bacteria in the lower Seine River and estuary (France)
-
Cébron, A., T. Berthe, and J. Garnier. 2003. Nitrification and nitrifying bacteria in the lower Seine River and estuary (France). Appl. Environ. Microbiol. 69:7091-7100.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 7091-7100
-
-
Cébron, A.1
Berthe, T.2
Garnier, J.3
-
15
-
-
0037251969
-
The Ribosomal Database Project (RDP-II): Previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
-
Cole, J. R., B. Chai, T. L. Marsh, R. J. Farris, Q. Wang, S. A. Kulam, S. Chandra, D. M. McGarrell, T. M. Schmidt, G. M. Garrity, and J. M. Tiedje. 2003. The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res. 31:442-443.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 442-443
-
-
Cole, J.R.1
Chai, B.2
Marsh, T.L.3
Farris, R.J.4
Wang, Q.5
Kulam, S.A.6
Chandra, S.7
McGarrell, D.M.8
Schmidt, T.M.9
Garrity, G.M.10
Tiedje, J.M.11
-
16
-
-
0035512205
-
In situ characterization of Nitrospira-like nitrite oxidizing bacteria active in wastewater treatment plants
-
Daims, H., J. L. Nielsen, P. H. Nielsen, K. H. Schleifer, and M. Wagner. 2001. In situ characterization of Nitrospira-like nitrite oxidizing bacteria active in wastewater treatment plants. Appl. Environ. Microbiol. 67:5273-5284.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 5273-5284
-
-
Daims, H.1
Nielsen, J.L.2
Nielsen, P.H.3
Schleifer, K.H.4
Wagner, M.5
-
17
-
-
0033930011
-
Novel Nitrospira-like bacteria as dominant nitrite-oxidizers in biofilms from wastewater treatment plants: Diversity and in situ physiology
-
Daims, H., P. H. Nielsen, J. L. Nielsen, S. Juretschko, and M. Wagner. 2000. Novel Nitrospira-like bacteria as dominant nitrite-oxidizers in biofilms from wastewater treatment plants: diversity and in situ physiology. Water Sci. Technol. 41:85-90.
-
(2000)
Water Sci. Technol.
, vol.41
, pp. 85-90
-
-
Daims, H.1
Nielsen, P.H.2
Nielsen, J.L.3
Juretschko, S.4
Wagner, M.5
-
18
-
-
0029018038
-
Detection and counting of Nitrobacter populations in soil by PCR
-
Degrange, V., and R. Bardin. 1995. Detection and counting of Nitrobacter populations in soil by PCR. Appl. Environ. Microbiol. 61:2093-2098.
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 2093-2098
-
-
Degrange, V.1
Bardin, R.2
-
19
-
-
0030657845
-
Activity, size and structure of a Nitrobacter community as affected by organic carbon and nitrite in sterile soil
-
Degrange, V., R. Lensi, and R. Bardin. 1997. Activity, size and structure of a Nitrobacter community as affected by organic carbon and nitrite in sterile soil. FEMS Microbiol. Ecol. 24:173-180.
-
(1997)
FEMS Microbiol. Ecol.
, vol.24
, pp. 173-180
-
-
Degrange, V.1
Lensi, R.2
Bardin, R.3
-
20
-
-
0031978771
-
Nitrification and occurrence of Nitrobacter by MPN-PCR in low and high nitrifying coniferous forest soils
-
Degrange, V., M. M. Couteaux, J. M. Anderson, M. P. Berg, and R. Lensi. 1998. Nitrification and occurrence of Nitrobacter by MPN-PCR in low and high nitrifying coniferous forest soils. Plant Soil 198:201-208.
-
(1998)
Plant Soil
, vol.198
, pp. 201-208
-
-
Degrange, V.1
Couteaux, M.M.2
Anderson, J.M.3
Berg, M.P.4
Lensi, R.5
-
21
-
-
0345517136
-
Assessment of three methods for detection and quantification of nitrite-oxidizing bacteria and Nitrobacter in freshwater sediments (MPN-PCR, MPN-Griess, immunofluorescence)
-
Feray, C., B. Volat, V. Degrange, A. Clays-Josserand, and B. Montuelle. 1999. Assessment of three methods for detection and quantification of nitrite-oxidizing bacteria and Nitrobacter in freshwater sediments (MPN-PCR, MPN-Griess, immunofluorescence). Microb. Ecol. 37:208-217.
-
(1999)
Microb. Ecol.
, vol.37
, pp. 208-217
-
-
Feray, C.1
Volat, B.2
Degrange, V.3
Clays-Josserand, A.4
Montuelle, B.5
-
22
-
-
2942620016
-
Differences between betaproteobacterial ammonia-oxidizing communities in marine sediments and those in overlying water
-
Freitag, T. E., and J. I. Prosser. 2004. Differences between betaproteobacterial ammonia-oxidizing communities in marine sediments and those in overlying water. Appl. Environ. Microbiol. 70:3789-3793.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 3789-3793
-
-
Freitag, T.E.1
Prosser, J.I.2
-
23
-
-
0037335946
-
Community structure of ammonia-oxidizing bacteria within anoxic marine sediments
-
Freitag, T. E., and J. I. Prosser. 2003. Community structure of ammonia-oxidizing bacteria within anoxic marine sediments. Appl. Environ. Microbiol. 69:1359-1371.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 1359-1371
-
-
Freitag, T.E.1
Prosser, J.I.2
-
24
-
-
0036132630
-
Simultaneous P and N removal in a sequencing batch biofilm reactor: Insights from reactor- and microscale investigations
-
Gieseke, A., P. Arnz, R. Amann, and A. Schramm. 2002. Simultaneous P and N removal in a sequencing batch biofilm reactor: insights from reactor- and microscale investigations. Water Res. 36:501-509.
-
(2002)
Water Res.
, vol.36
, pp. 501-509
-
-
Gieseke, A.1
Arnz, P.2
Amann, R.3
Schramm, A.4
-
25
-
-
0034468557
-
Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition
-
Griffiths, R. I., A. S. Whiteley, A. G. O'Donnell, and M. J. Bailey. 2000. Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl. Environ. Microbiol. 66:5488-5491.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 5488-5491
-
-
Griffiths, R.I.1
Whiteley, A.S.2
O'Donnell, A.G.3
Bailey, M.J.4
-
27
-
-
0342717423
-
Nitrification in grassland soils
-
Technische Universitaet, Braunschweig, Braunschweig, Germany
-
Hatch, D. J., S. C. Jarvis, and R. J. Parkinson. 1996. Nitrification in grassland soils, p. 239-241. In Transactions of the 9th Nitrogen Workshop. Technische Universitaet, Braunschweig, Braunschweig, Germany.
-
(1996)
Transactions of the 9th Nitrogen Workshop
, pp. 239-241
-
-
Hatch, D.J.1
Jarvis, S.C.2
Parkinson, R.J.3
-
28
-
-
0034016793
-
Combining field incubation with nitrogen-15 labelling to examine nitrogen transformations in low to high intensity grassland management systems
-
Hatch, D. J., S. C. Jarvis, R. J. Parkinson, and R. D. Lovell. 2000. Combining field incubation with nitrogen-15 labelling to examine nitrogen transformations in low to high intensity grassland management systems. Biol. Fertil. Soils 30:492-499.
-
(2000)
Biol. Fertil. Soils
, vol.30
, pp. 492-499
-
-
Hatch, D.J.1
Jarvis, S.C.2
Parkinson, R.J.3
Lovell, R.D.4
-
29
-
-
0035208453
-
Phylogenetic structure of unusual aquatic microbial formations in Nuliarbor caves, Australia
-
Holmes, A. J., N. A. Tujula, M. Holley, A. Contos, J. M. James, P. Rogers, and M. R. Gillings. 2001. Phylogenetic structure of unusual aquatic microbial formations in Nuliarbor caves, Australia. Environ. Microbiol. 3:256-264.
-
(2001)
Environ. Microbiol.
, vol.3
, pp. 256-264
-
-
Holmes, A.J.1
Tujula, N.A.2
Holley, M.3
Contos, A.4
James, J.M.5
Rogers, P.6
Gillings, M.R.7
-
30
-
-
0031975148
-
Nitrospira-like bacteria associated with nitrite oxidation in freshwater aquaria
-
Hovanec, T. A., L. T. Taylor, A. Blakis, and E. F. Delong. 1998. Nitrospira-like bacteria associated with nitrite oxidation in freshwater aquaria. Appl. Environ. Microbiol. 64:258-264.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 258-264
-
-
Hovanec, T.A.1
Taylor, L.T.2
Blakis, A.3
Delong, E.F.4
-
31
-
-
5044240973
-
Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
-
Huber, T., G. Faulkner, and P. Hugenholtz. 2004. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20:2317-2319.
-
(2004)
Bioinformatics
, vol.20
, pp. 2317-2319
-
-
Huber, T.1
Faulkner, G.2
Hugenholtz, P.3
-
32
-
-
0035989129
-
The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach
-
Juretschko, S., A. Loy, A. Lehner, and M. Wagner. 2002. The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach. Syst. Appl. Microbiol. 25:84-99.
-
(2002)
Syst. Appl. Microbiol.
, vol.25
, pp. 84-99
-
-
Juretschko, S.1
Loy, A.2
Lehner, A.3
Wagner, M.4
-
33
-
-
0032147190
-
Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-tike bacteria as dominant populations
-
Juretschko, S., G. Timmermann, M. Schmid, K. H. Schleifer, A. Pommerening-Röser, H. P. Koops, and M. Wagner. 1998. Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-tike bacteria as dominant populations. Appl. Environ. Microbiol. 64:3042-3051.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3042-3051
-
-
Juretschko, S.1
Timmermann, G.2
Schmid, M.3
Schleifer, K.H.4
Pommerening- Röser, A.5
Koops, H.P.6
Wagner, M.7
-
34
-
-
0034888778
-
Phylogenetic analysis of microbial diversity in the rhizoplane of oilseed rape (Brassica napus cv. Westar) employing cultivation-dependent and cultivation-independent approaches
-
Kaiser, O., A. Puhler, and W. Selbitschka. 2001. Phylogenetic analysis of microbial diversity in the rhizoplane of oilseed rape (Brassica napus cv. Westar) employing cultivation-dependent and cultivation-independent approaches. Microb. Ecol. 42:136-149.
-
(2001)
Microb. Ecol.
, vol.42
, pp. 136-149
-
-
Kaiser, O.1
Puhler, A.2
Selbitschka, W.3
-
35
-
-
1642418320
-
Ecophysiological interaction between nitrifying bacteria and heterotrophic bacteria in autotrophic nitrifying biofilms as determined by microautoradiography-fluorescence in situ hybridization
-
Kindaichi, T., T. Ito, and S. Okabe. 2004. Ecophysiological interaction between nitrifying bacteria and heterotrophic bacteria in autotrophic nitrifying biofilms as determined by microautoradiography-fluorescence in situ hybridization. Appl. Environ. Microbiol. 70:1641-1650.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 1641-1650
-
-
Kindaichi, T.1
Ito, T.2
Okabe, S.3
-
36
-
-
0034868585
-
Distribution and ecophysiology of the nitrifying bacteria emphasizing cultured species
-
Koops, H. P., and A. Pommerening-Röser. 2001. Distribution and ecophysiology of the nitrifying bacteria emphasizing cultured species. FEMS Microbiol. Ecol. 37:1-9.
-
(2001)
FEMS Microbiol. Ecol.
, vol.37
, pp. 1-9
-
-
Koops, H.P.1
Pommerening-Röser, A.2
-
37
-
-
0034775280
-
Ammonia-oxidizing bacteria: A model for molecular microbial ecology
-
Kowalchuk, G. A., and J. R. Stephen. 2001. Ammonia-oxidizing bacteria: a model for molecular microbial ecology. Annu. Rev. Microbiol. 55:485-529.
-
(2001)
Annu. Rev. Microbiol.
, vol.55
, pp. 485-529
-
-
Kowalchuk, G.A.1
Stephen, J.R.2
-
38
-
-
0032436805
-
Community analysis of ammonia-oxidising bacteria, in relation to oxygen availability in soils and root-oxygenated sediments, using PCR, DGGE and oligonucleotide probe hybridisation
-
Kowalchuk, G. A., P. L. E. Bodelier, G. H. J. Heilig, J. R. Stephen, and H. J. Laanbroek. 1998. Community analysis of ammonia-oxidising bacteria, in relation to oxygen availability in soils and root-oxygenated sediments, using PCR, DGGE and oligonucleotide probe hybridisation. FEMS Microbiol. Ecol. 27:339-350.
-
(1998)
FEMS Microbiol. Ecol.
, vol.27
, pp. 339-350
-
-
Kowalchuk, G.A.1
Bodelier, P.L.E.2
Heilig, G.H.J.3
Stephen, J.R.4
Laanbroek, H.J.5
-
39
-
-
0028181246
-
Reconstructing evolutionary trees from DNA and protein sequences-paralinear distances
-
Lake, J. A. 1994. Reconstructing evolutionary trees from DNA and protein sequences-paralinear distances. Proc. Natl. Acad. Sci. USA 91:1455-1459.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 1455-1459
-
-
Lake, J.A.1
-
40
-
-
0001857117
-
16S/23S rRNA sequencing
-
E. Stackebrandt and M. Goodfellow (ed.). Academic Press, Chichester, England
-
Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 115-175. in E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. Academic Press, Chichester, England.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
41
-
-
84930158882
-
Toxicity of nitrite to fish: A review
-
Lewis, W. M., and D. P. Morris. 1986. Toxicity of nitrite to fish: a review. Am. Fish. Soc. 115:183-195.
-
(1986)
Am. Fish. Soc.
, vol.115
, pp. 183-195
-
-
Lewis, W.M.1
Morris, D.P.2
-
42
-
-
0032990367
-
Bacterial diversity in deep-sea sediments from different depths
-
Li, L. N., C. Kato, and K. Horikoshi. 1999. Bacterial diversity in deep-sea sediments from different depths. Biodivers. Conserv. 8:659-677.
-
(1999)
Biodivers. Conserv.
, vol.8
, pp. 659-677
-
-
Li, L.N.1
Kato, C.2
Horikoshi, K.3
-
43
-
-
0029935637
-
Evolution of chlorophyll and bacteriochlorophyll: The problem of invariant sites in sequence analysis
-
Lockhart, P. J., A. W. D. Larkum, M. A. Steel, P. J. Waddell, and D. Penny. 1996. Evolution of chlorophyll and bacteriochlorophyll: the problem of invariant sites in sequence analysis. Proc. Natl. Acad. Sci. USA 93:1930-1934.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 1930-1934
-
-
Lockhart, P.J.1
Larkum, A.W.D.2
Steel, M.A.3
Waddell, P.J.4
Penny, D.5
-
44
-
-
0035487280
-
Numerical analysis of grassland bacterial community structure under different land management regimens by using 16S ribosomal DNA sequence data and denaturing gradient gel electrophoresis banding patterns
-
McCaig, A. E., L. A. Glover, and J. I. Prosser. 2001. Numerical analysis of grassland bacterial community structure under different land management regimens by using 16S ribosomal DNA sequence data and denaturing gradient gel electrophoresis banding patterns. Appl. Environ. Microbiol. 67: 4554-4559.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 4554-4559
-
-
McCaig, A.E.1
Glover, L.A.2
Prosser, J.I.3
-
45
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S ribosomal RNA
-
Muyzer, G., E. C. de Waal, and A. G. Uitterlinden. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S ribosomal RNA. Appl. Environ. Microbiol. 59:695-700.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
De Waal, E.C.2
Uitterlinden, A.G.3
-
46
-
-
0026744465
-
Genomic heterogeneity of the genus Nitrobacter
-
Navarre, E., M. P. Fernandez, F. Griment, A. Claysjosserand, and R. Bardin. 1992. Genomic heterogeneity of the genus Nitrobacter. Int. J. Syst. Bacteriol. 42:554-560.
-
(1992)
Int. J. Syst. Bacteriol.
, vol.42
, pp. 554-560
-
-
Navarre, E.1
Fernandez, M.P.2
Griment, F.3
Claysjosserand, A.4
Bardin, R.5
-
47
-
-
0028089129
-
Molecular phylogenetic analysis of Nitrobacter spp
-
Orso, S., M. Gouy, E. Navarre, and P. Normand. 1994. Molecular phylogenetic analysis of Nitrobacter spp. Int. J. Syst. Bacteriol. 44:83-86.
-
(1994)
Int. J. Syst. Bacteriol.
, vol.44
, pp. 83-86
-
-
Orso, S.1
Gouy, M.2
Navarre, E.3
Normand, P.4
-
48
-
-
0036667447
-
Conflicting phylogeographic patterns in rRNA and nifD indicate regionally restricted gene transfer in Bradyrhizobium
-
Parker, M. A., B. Lafay, J. J. Burdon, and P. van Berkum. 2002. Conflicting phylogeographic patterns in rRNA and nifD indicate regionally restricted gene transfer in Bradyrhizobium. Microbiology 148:2557-2565.
-
(2002)
Microbiology
, vol.148
, pp. 2557-2565
-
-
Parker, M.A.1
Lafay, B.2
Burdon, J.J.3
Van Berkum, P.4
-
49
-
-
0034467819
-
Effects of agronomic treatments on structure and function of ammonia-oxidizing communities
-
Phillips, C. J., D. Harris, S. L. Dollhopf, K. L. Gross, J. I. Prosser, and E. A. Paul. 2000. Effects of agronomic treatments on structure and function of ammonia-oxidizing communities. Appl. Environ. Microbiol. 66:5410-5418.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 5410-5418
-
-
Phillips, C.J.1
Harris, D.2
Dollhopf, S.L.3
Gross, K.L.4
Prosser, J.I.5
Paul, E.A.6
-
50
-
-
0024822090
-
Autotrophic nitrification in bacteria
-
Prosser, J. I. 1989. Autotrophic nitrification in bacteria. Adv. Microb. Physiol. 30:125-181.
-
(1989)
Adv. Microb. Physiol.
, vol.30
, pp. 125-181
-
-
Prosser, J.I.1
-
51
-
-
0141502465
-
16S rRNA and amoA-based phytogeny of 12 novel betaproteobacterial ammonia-oxidizing isolates: Extension of the datasct and proposal of a new lineage within the nitrosomonads
-
Purkhold, U., M. Wagner, G. Timmermann, A. Pommerening-Röser, and H. P. Koops. 2003. 16S rRNA and amoA-based phytogeny of 12 novel betaproteobacterial ammonia-oxidizing isolates: extension of the datasct and proposal of a new lineage within the nitrosomonads. Int. J. Syst. Evol. Microbiol. 53:1485-1494.
-
(2003)
Int. J. Syst. Evol. Microbiol.
, vol.53
, pp. 1485-1494
-
-
Purkhold, U.1
Wagner, M.2
Timmermann, G.3
Pommerening-Röser, A.4
Koops, H.P.5
-
52
-
-
0036135781
-
Ammonia- and nitrite-oxidizing bacterial communities in a pilot-scale chloraminated drinking water distribution system
-
Regan, J. M., G. W. Harrington, and D. R. Noguera. 2002. Ammonia- and nitrite-oxidizing bacterial communities in a pilot-scale chloraminated drinking water distribution system. Appl. Environ. Microbiol. 68:73-81.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 73-81
-
-
Regan, J.M.1
Harrington, G.W.2
Noguera, D.R.3
-
53
-
-
0000506120
-
Nitrogen use efficiency in row-crop agriculture: Crop nitrogen use and soil nitrogen loss
-
L. E. Jackson (ed.). Academic Press, San Diego, Calif.
-
Robertson, G. P. 1997. Nitrogen use efficiency in row-crop agriculture: crop nitrogen use and soil nitrogen loss, p. 347-365. In L. E. Jackson (ed.), Ecology in agriculture. Academic Press, San Diego, Calif.
-
(1997)
Ecology in Agriculture
, pp. 347-365
-
-
Robertson, G.P.1
-
54
-
-
0037400432
-
Evaluation of the impact of bioaugmentation and biostimulation by in situ hybridization and microelectrode
-
Satoh, H., S. Okabe, Y. Yamaguchi, and Y. Watanabe. 2003. Evaluation of the impact of bioaugmentation and biostimulation by in situ hybridization and microelectrode. Water Res. 37:2206-2216.
-
(2003)
Water Res.
, vol.37
, pp. 2206-2216
-
-
Satoh, H.1
Okabe, S.2
Yamaguchi, Y.3
Watanabe, Y.4
-
55
-
-
0142102395
-
Effect of root exudates on growth of newly isolated nitrifying bacteria from barley rhizoplane
-
Satoh, K., T. Yanagida, K. Isobe, H. Tomiyama, R. Takahashi, H. Iwano, and T. Tokuyama. 2003. Effect of root exudates on growth of newly isolated nitrifying bacteria from barley rhizoplane. Soil Sci. Plant Nutr. 49:757-762.
-
(2003)
Soil Sci. Plant Nutr.
, vol.49
, pp. 757-762
-
-
Satoh, K.1
Yanagida, T.2
Isobe, K.3
Tomiyama, H.4
Takahashi, R.5
Iwano, H.6
Tokuyama, T.7
-
56
-
-
0043127945
-
In situ analysis of structure and activity of the nitrifying community in biofilms, aggregates, and sediments
-
Schramm, A. 2003. In situ analysis of structure and activity of the nitrifying community in biofilms, aggregates, and sediments. Geomicrobiol. J. 20:313-333.
-
(2003)
Geomicrobiol. J.
, vol.20
, pp. 313-333
-
-
Schramm, A.1
-
57
-
-
0034551698
-
Microenvironments and distribution of nitrifying bacteria in a membrane-bound biofilm
-
Schramm, A., D. De Beer, A. Gieseke, and R. Amann. 2000. Microenvironments and distribution of nitrifying bacteria in a membrane-bound biofilm. Environ. Microbiol. 2:680-686.
-
(2000)
Environ. Microbiol.
, vol.2
, pp. 680-686
-
-
Schramm, A.1
De Beer, D.2
Gieseke, A.3
Amann, R.4
-
58
-
-
0031684927
-
Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor
-
Schramm, A., D. De Beer, M. Wagner, and R. Amann. 1998. Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor. Appl. Environ. Microbiol. 64: 3480-3485.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3480-3485
-
-
Schramm, A.1
De Beer, D.2
Wagner, M.3
Amann, R.4
-
59
-
-
0032812283
-
Microscale distribution of populations and activities of Nitrosospira and Nitrospira spp. along a macroscale gradient in a nitrifying bioreactor. quantification by in situ hybridization and the use of microsensors
-
Schramm, A., D. de Beer, J. C. van den Heuvel, S. Ottengraf, and R. Amann. 1999. Microscale distribution of populations and activities of Nitrosospira and Nitrospira spp. along a macroscale gradient in a nitrifying bioreactor. quantification by in situ hybridization and the use of microsensors. Appl. Environ. Microbiol. 65:3690-3696.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3690-3696
-
-
Schramm, A.1
De Beer, D.2
Van Den Heuvel, J.C.3
Ottengraf, S.4
Amann, R.5
-
60
-
-
0031832135
-
In situ structure/function studies in wastewater treatment systems
-
Schramm, A., D. De Beer, H. van den Heuvel, S. Ottengraf, and R. Amann. 1998. In situ structure/function studies in wastewater treatment systems. Water Sci. Technol. 37:413-416.
-
(1998)
Water Sci. Technol.
, vol.37
, pp. 413-416
-
-
Schramm, A.1
De Beer, D.2
Van Den Heuvel, H.3
Ottengraf, S.4
Amann, R.5
-
61
-
-
0029659250
-
Structure and function of a nitrifying biofilm as determined by in situ hybridization and the use of microelectrodes
-
Schramm, A., L. H. Larsen, N. P. Revsbech, N. B. Ramsing, R. Amann, and K. H. Schleifer. 1996. Structure and function of a nitrifying biofilm as determined by in situ hybridization and the use of microelectrodes. Appl. Environ. Microbiol. 62:4641-4647.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 4641-4647
-
-
Schramm, A.1
Larsen, L.H.2
Revsbech, N.P.3
Ramsing, N.B.4
Amann, R.5
Schleifer, K.H.6
-
62
-
-
0031670308
-
Isolation and characterization of a novel facultatively alkaliphilic Nitrobacter species, N. alkalicus sp. nov
-
Sorokin, D. Y., G. Muyzer, T. Brinkhoff, J. G. Kuenen, and M. S. M. Jetten. 1998. Isolation and characterization of a novel facultatively alkaliphilic Nitrobacter species, N. alkalicus sp. nov. Arch. Microbiol. 170:345-352.
-
(1998)
Arch. Microbiol.
, vol.170
, pp. 345-352
-
-
Sorokin, D.Y.1
Muyzer, G.2
Brinkhoff, T.3
Kuenen, J.G.4
Jetten, M.S.M.5
-
63
-
-
0031680232
-
Loss of ammonia monooxygenase activity in Nitrosomonas europaea upon exposure to nitrite
-
Stein, L. Y., and D. J. Arp. 1998. Loss of ammonia monooxygenase activity in Nitrosomonas europaea upon exposure to nitrite. Appl. Environ. Microbiol. 64:4098-4102.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 4098-4102
-
-
Stein, L.Y.1
Arp, D.J.2
-
65
-
-
8744221610
-
High-rate nitrification at low pH in suspended- and attached-biomass reactors
-
Tarre, S., and M. Green. 2004. High-rate nitrification at low pH in suspended- and attached-biomass reactors. Appl. Environ. Microbiol. 70:6481-6487.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 6481-6487
-
-
Tarre, S.1
Green, M.2
-
66
-
-
0028079873
-
Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria
-
Teske, A., E. Aim, J. M. Regan, S. Toze, B. E. Rittmann, and D. A. Stahl. 1994. Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria. J. Bacteriol. 176:6623-6630.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 6623-6630
-
-
Teske, A.1
Aim, E.2
Regan, J.M.3
Toze, S.4
Rittmann, B.E.5
Stahl, D.A.6
-
67
-
-
0038222576
-
Discordant phytogenies within the rrn loci of rhizobia
-
van Berkum, P., Z. Terefework, L. Paulin, S. Suomalainen, K. Lindstrom, and B. D. Eardly. 2003. Discordant phytogenies within the rrn loci of rhizobia. J. Bacteriol. 185:2988-2998.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 2988-2998
-
-
Van Berkum, P.1
Terefework, Z.2
Paulin, L.3
Suomalainen, S.4
Lindstrom, K.5
Eardly, B.D.6
-
68
-
-
12044254346
-
Surveys of gene families using polymerase chain-reaction-PCR selection and PCR drift
-
Wagner, A., N. Blackstone, P. Cartwright, M. Dick, B. Misof, P. Snow, G. P. Wagner, J. Bartels, M. Murtha, and J. Pendleton. 1994. Surveys of gene families using polymerase chain-reaction-PCR selection and PCR drift. Syst. Biol. 43:250-261.
-
(1994)
Syst. Biol.
, vol.43
, pp. 250-261
-
-
Wagner, A.1
Blackstone, N.2
Cartwright, P.3
Dick, M.4
Misof, B.5
Snow, P.6
Wagner, G.P.7
Bartels, J.8
Murtha, M.9
Pendleton, J.10
-
69
-
-
0000301525
-
Characteristics of two marine nitrite-oxidizing bacteria, Nitrospina gracilis nov. gen. nov. sp. and Nitrococcus mobilis nov. gen. nov. sp
-
Watson, S. W., and J. B. Waterbury. 1971. Characteristics of two marine nitrite-oxidizing bacteria, Nitrospina gracilis nov. gen. nov. sp. and Nitrococcus mobilis nov. gen. nov. sp. Arch. Microbiol. 77:203-230.
-
(1971)
Arch. Microbiol.
, vol.77
, pp. 203-230
-
-
Watson, S.W.1
Waterbury, J.B.2
-
70
-
-
17844403255
-
Links between ammonia oxidiser species composition, functional diversity and nitrification kinetics in grassland soils
-
Webster, G., T. M. Embley, T. E. Freitag, Z. Smith, and J. I. Prosser. 2005. Links between ammonia oxidiser species composition, functional diversity and nitrification kinetics in grassland soils. Environ. Microbiol. 7:676-684.
-
(2005)
Environ. Microbiol.
, vol.7
, pp. 676-684
-
-
Webster, G.1
Embley, T.M.2
Freitag, T.E.3
Smith, Z.4
Prosser, J.I.5
-
71
-
-
0027120910
-
Evidence for a close genealogical relationship between Afipia (the causal organism of cat scratch disease), Bradyrhizobium japonicum and Blastobacter denitrificans
-
Willems, A., and M. D. Collins. 1992. Evidence for a close genealogical relationship between Afipia (the causal organism of cat scratch disease), Bradyrhizobium japonicum and Blastobacter denitrificans. FEMS Microbiol. Lett. 96:241-246.
-
(1992)
FEMS Microbiol. Lett.
, vol.96
, pp. 241-246
-
-
Willems, A.1
Collins, M.D.2
-
72
-
-
2342501844
-
Phylogenetic diversity of drinking water bacteria in a distribution system simulator
-
Williams, M. M., J. W. S. Domingo, M. C. Meckes, C. A. Kelty, and H. S. Rochon. 2004. Phylogenetic diversity of drinking water bacteria in a distribution system simulator. J. Appl. Microbiol. 96:954-964.
-
(2004)
J. Appl. Microbiol.
, vol.96
, pp. 954-964
-
-
Williams, M.M.1
Domingo, J.W.S.2
Meckes, M.C.3
Kelty, C.A.4
Rochon, H.S.5
-
73
-
-
4444233695
-
Community analysis of ammonia oxidizer in the oxygen-limited nitritation stage of OLAND system by DGGE of PCR amplified 16S rDNA fragments and FISH
-
Zhang, D., D. M. Zhang, Y. P. Liu, W. W. Cao, and G. X. Chen. 2004. Community analysis of ammonia oxidizer in the oxygen-limited nitritation stage of OLAND system by DGGE of PCR amplified 16S rDNA fragments and FISH. J. Environ. Sci. 16:838-842.
-
(2004)
J. Environ. Sci.
, vol.16
, pp. 838-842
-
-
Zhang, D.1
Zhang, D.M.2
Liu, Y.P.3
Cao, W.W.4
Chen, G.X.5
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