메뉴 건너뛰기




Volumn 71, Issue 1, 2005, Pages 197-206

Autotrophic ammonia-oxidizing bacteria contribute minimally to nitrification in a nitrogen-impacted forested ecosystem

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIA; COMPOSITION; DEPOSITION; ECOSYSTEMS; NITRIFICATION; OXIDATION; PH EFFECTS; SOILS; SOLUBILITY;

EID: 12244291014     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.71.1.197-206.2005     Document Type: Article
Times cited : (71)

References (50)
  • 2
    • 0000843951 scopus 로고
    • Soil-moisture use by mixed conifer forest in a summer-dry climate
    • Arkley, R. J. 1981. Soil-moisture use by mixed conifer forest in a summer-dry climate. Soil Sci. Soc. Am. J. 45:423-427.
    • (1981) Soil Sci. Soc. Am. J. , vol.45 , pp. 423-427
    • Arkley, R.J.1
  • 3
    • 0142040853 scopus 로고    scopus 로고
    • Patterns of community change among ammonia oxidizers in meadow soils upon long-term incubation at different temperatures
    • Avrahami, S., and R. Conrad. 2003. Patterns of community change among ammonia oxidizers in meadow soils upon long-term incubation at different temperatures. Appl. Environ. Microbiol. 69:6152-6164.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 6152-6164
    • Avrahami, S.1    Conrad, R.2
  • 4
    • 0033765459 scopus 로고    scopus 로고
    • Molecular analysis of ammonia oxidation and denitrification in natural environments
    • Bothe, H., G. Jost, M. Schloter, B. B. Ward, and K.-P. Witzel. 2000. Molecular analysis of ammonia oxidation and denitrification in natural environments. FEMS Microbiol. Rev. 24:673-690.
    • (2000) FEMS Microbiol. Rev. , vol.24 , pp. 673-690
    • Bothe, H.1    Jost, G.2    Schloter, M.3    Ward, B.B.4    Witzel, K.-P.5
  • 5
    • 0036874477 scopus 로고    scopus 로고
    • A global analysis of acidification and eutrophication of terrestrial ecosystems
    • Bouwman, A. F., D. P. Van Vuuren, R. G. Derwent, and M. Posch. 2002. A global analysis of acidification and eutrophication of terrestrial ecosystems. Water Air Soil Pollut. 141:349-382.
    • (2002) Water Air Soil Pollut. , vol.141 , pp. 349-382
    • Bouwman, A.F.1    Van Vuuren, D.P.2    Derwent, R.G.3    Posch, M.4
  • 6
    • 0033015223 scopus 로고    scopus 로고
    • Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils
    • Bruns, M. A., J. R. Stephen, G. A. Kowalchuk, J. I. Presser, and E. A. Paul. 1999. Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils. Appl. Environ. Microbiol. 65:2994-3000.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 2994-3000
    • Bruns, M.A.1    Stephen, J.R.2    Kowalchuk, G.A.3    Presser, J.I.4    Paul, E.A.5
  • 7
    • 0036563050 scopus 로고    scopus 로고
    • - sources in runoff at two watersheds in the Catskill Mountains of New York
    • - sources in runoff at two watersheds in the Catskill Mountains of New York. Water Resour. Res. 38:1051.
    • (2002) Water Resour. Res. , vol.38 , pp. 1051
    • Burns, D.A.1    Kendall, C.2
  • 9
    • 0036305159 scopus 로고    scopus 로고
    • Nitrosomonas europaealike bacteria detected as the dominant β-subclass Proteobacteria ammonia oxidisers in reference and limed acid forest soils
    • Carnol, M., G. A. Kowalchuk, and W. De Boer. 2002. Nitrosomonas europaealike bacteria detected as the dominant β-subclass Proteobacteria ammonia oxidisers in reference and limed acid forest soils. Soil Biol. Biochem. 34:1047-1050.
    • (2002) Soil Biol. Biochem. , vol.34 , pp. 1047-1050
    • Carnol, M.1    Kowalchuk, G.A.2    De Boer, W.3
  • 11
    • 0025776579 scopus 로고
    • A sequence assembly and editing program for efficient management of large projects
    • Dear, S., and R. Staden. 1991. A sequence assembly and editing program for efficient management of large projects. Nucleic Acids Res. 19:3907-3911.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 3907-3911
    • Dear, S.1    Staden, R.2
  • 12
    • 0034973916 scopus 로고    scopus 로고
    • Nitrification in acid soils: Microorganisms and mechanisms
    • De Boer, W., and G. A. Kowalchuk. 2001. Nitrification in acid soils: microorganisms and mechanisms. Soil Biol. Biochem. 33:853-866.
    • (2001) Soil Biol. Biochem. , vol.33 , pp. 853-866
    • De Boer, W.1    Kowalchuk, G.A.2
  • 14
    • 0027338090 scopus 로고
    • Dry deposition of nitrogen and sulfur to ponderosa and Jeffrey pine in the San Bernardino National Forest in southern California
    • Fenn, M. E., and A. Bytnerowicz. 1993, Dry deposition of nitrogen and sulfur to ponderosa and Jeffrey pine in the San Bernardino National Forest in southern California. Environ. Pollut. 81:277-285.
    • (1993) Environ. Pollut. , vol.81 , pp. 277-285
    • Fenn, M.E.1    Bytnerowicz, A.2
  • 16
    • 1842828042 scopus 로고    scopus 로고
    • A throughfall collection method using mixed bed ion exchange resin columns
    • Fenn, M. E., M. A. Poth, and M. J. Arbaugh. 2002. A throughfall collection method using mixed bed ion exchange resin columns. Sci. World J. 2:122-130.
    • (2002) Sci. World J. , vol.2 , pp. 122-130
    • Fenn, M.E.1    Poth, M.A.2    Arbaugh, M.J.3
  • 17
    • 0030429712 scopus 로고    scopus 로고
    • Evidence for nitrogen saturation in the San Bernardino Mountains in southern California
    • Fenn, M. E., M. A. Poth, and D. W. Johnson. 1996. Evidence for nitrogen saturation in the San Bernardino Mountains in southern California. For. Ecol. Manage. 82:211-230.
    • (1996) For. Ecol. Manage. , vol.82 , pp. 211-230
    • Fenn, M.E.1    Poth, M.A.2    Johnson, D.W.3
  • 18
    • 0033766895 scopus 로고    scopus 로고
    • Through-fall and fog deposition of nitrogen and sulfur at an N-limited and N-saturated site in the San Bernardino Mountains, southern California
    • Fenn, M. E., M. A. Poth, S. L. Schilling, and D. B. Grainger. 2000. Through-fall and fog deposition of nitrogen and sulfur at an N-limited and N-saturated site in the San Bernardino Mountains, southern California. Can. J. For. Res. 30:1476-1488.
    • (2000) Can. J. For. Res. , vol.30 , pp. 1476-1488
    • Fenn, M.E.1    Poth, M.A.2    Schilling, S.L.3    Grainger, D.B.4
  • 19
    • 0035146327 scopus 로고    scopus 로고
    • Pseudomonas stutzeri nitrite reductase gene abundance in environmental samples measured by real-time PCR
    • Gruntzig, V., S. C. Nold, J. Z. Zhou, and J. M. Tiedje. 2001. Pseudomonas stutzeri nitrite reductase gene abundance in environmental samples measured by real-time PCR. Appl. Environ. Microbiol. 67:760-768.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 760-768
    • Gruntzig, V.1    Nold, S.C.2    Zhou, J.Z.3    Tiedje, J.M.4
  • 21
    • 0034010942 scopus 로고    scopus 로고
    • Analysis of ammonia-oxidizing bacteria populations in acid forest soil during conditions of moisture limitation
    • Hastings, R. C., C. Butler, I. Singleton, J. R. Saunders, and A. J. McCarthy. 2000. Analysis of ammonia-oxidizing bacteria populations in acid forest soil during conditions of moisture limitation. Lett. Appl. Microbiol. 30:14-18.
    • (2000) Lett. Appl. Microbiol. , vol.30 , pp. 14-18
    • Hastings, R.C.1    Butler, C.2    Singleton, I.3    Saunders, J.R.4    McCarthy, A.J.5
  • 22
    • 0035144174 scopus 로고    scopus 로고
    • Quantification of ammonia-oxidizing bacteria in arable soil by real-time PCR
    • Hermansson, A., and P.-E. Lindgren. 2001. Quantification of ammonia-oxidizing bacteria in arable soil by real-time PCR. Appl. Environ. Microbiol. 67:972-976.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 972-976
    • Hermansson, A.1    Lindgren, P.-E.2
  • 23
    • 0035956599 scopus 로고    scopus 로고
    • Quantification of ammonia oxidizing bacteria in soil using microcolony technique combined with fluorescence in situ hybridization (MCFU-FISH)
    • Hesselsoe, M., K. K. Brandt, and J. Sorensen. 2001. Quantification of ammonia oxidizing bacteria in soil using microcolony technique combined with fluorescence in situ hybridization (MCFU-FISH). FEMS Microbiol. Ecol. 38:87-95.
    • (2001) FEMS Microbiol. Ecol. , vol.38 , pp. 87-95
    • Hesselsoe, M.1    Brandt, K.K.2    Sorensen, J.3
  • 24
    • 0022065534 scopus 로고
    • Suicidal inactivation and labeling of ammonia monooxygenase by acetylene
    • Hyman, M. R., and P. M. Wood. 1985. Suicidal inactivation and labeling of ammonia monooxygenase by acetylene. Biochem. J. 227:719-725.
    • (1985) Biochem. J. , vol.227 , pp. 719-725
    • Hyman, M.R.1    Wood, P.M.2
  • 25
    • 0038221311 scopus 로고    scopus 로고
    • Quantitative detection of methanotrophs in soil by novel pmoA-targeted real-time PCR assays
    • Kolb, S., C. Knief, S. Stubner, and R. Conrad. 2003. Quantitative detection of methanotrophs in soil by novel pmoA-targeted real-time PCR assays. Appl. Environ. Microbiol. 69:2423-2429.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 2423-2429
    • Kolb, S.1    Knief, C.2    Stubner, S.3    Conrad, R.4
  • 27
    • 0033766118 scopus 로고    scopus 로고
    • A stable isotopic study to determine carbon and nitrogen cycling in a disturbed southern Californian ecosystem
    • Korontzi, S., S. A. Macko, I. C. Anderson, and M. A. Poth. 2000. A stable isotopic study to determine carbon and nitrogen cycling in a disturbed southern Californian ecosystem. Glob. Biogeochem. Cyc. 14:177-188.
    • (2000) Glob. Biogeochem. Cyc. , vol.14 , pp. 177-188
    • Korontzi, S.1    Macko, S.A.2    Anderson, I.C.3    Poth, M.A.4
  • 28
    • 0032436805 scopus 로고    scopus 로고
    • Community analysis of ammonia-oxidising bacteria, in relation to oxygen availability in soils and root-oxygenated sediments, with PCR, DGGE and oligonucleotide probe hybridisation
    • Kowalchuk, G. A., P. L. E. Bodelier, G. H. J. Heilig, J. R. Stephen, and H. J. Laanbroek. 1998. Community analysis of ammonia-oxidising bacteria, in relation to oxygen availability in soils and root-oxygenated sediments, with PCR, DGGE and oligonucleotide probe hybridisation. FEMS Microbiol. Ecol. 27:1489-1497.
    • (1998) FEMS Microbiol. Ecol. , vol.27 , pp. 1489-1497
    • Kowalchuk, G.A.1    Bodelier, P.L.E.2    Heilig, G.H.J.3    Stephen, J.R.4    Laanbroek, H.J.5
  • 29
    • 0034775280 scopus 로고    scopus 로고
    • Ammonia-oxidizing bacteria: A model for molecular microbial ecology
    • Kowalchuk, G. A., and J. R. Stephen. 2001. Ammonia-oxidizing bacteria: a model for molecular microbial ecology. Annu. Rev. Microbiol, 55:485-529.
    • (2001) Annu. Rev. Microbiol. , vol.55 , pp. 485-529
    • Kowalchuk, G.A.1    Stephen, J.R.2
  • 30
    • 0030901922 scopus 로고    scopus 로고
    • Analysis of ammonia-oxidizing bacteria of the β subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments
    • Kowalchuk, G. A., J. R. Stephen, W. DeBoer, J. I. Presser, T. M. Embley, and J. W. Woldendorp. 1997. Analysis of ammonia-oxidizing bacteria of the β subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments. Appl. Environ. Microbiol. 63:1489-1497.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1489-1497
    • Kowalchuk, G.A.1    Stephen, J.R.2    DeBoer, W.3    Presser, J.I.4    Embley, T.M.5    Woldendorp, J.W.6
  • 31
    • 0034548634 scopus 로고    scopus 로고
    • Changes in the community structure of ammonia-oxidizing bacteria during secondary succession of calcareous grasslands
    • Kowalchuk, G. A., A. W. Stienstra, G. H. J. Heilig, J. Stephen, and J. W. Woldendrop. 2000. Changes in the community structure of ammonia-oxidizing bacteria during secondary succession of calcareous grasslands. Environ. Microbiol. 2:99-110.
    • (2000) Environ. Microbiol. , vol.2 , pp. 99-110
    • Kowalchuk, G.A.1    Stienstra, A.W.2    Heilig, G.H.J.3    Stephen, J.4    Woldendrop, J.W.5
  • 32
    • 0034009793 scopus 로고    scopus 로고
    • Molecular analysis of ammonia-oxidising bacteria in soil of successional grasslands of the Drentsche A (the Netherlands)
    • Kowalchuk, G. A., A. W. Stienstra, G. H. J. Heilig, J. R. Stephen, and J. W. Woldendrop. 2000. Molecular analysis of ammonia-oxidising bacteria in soil of successional grasslands of the Drentsche A (The Netherlands). FEMS Microbiol. Ecol. 31:207-215.
    • (2000) FEMS Microbiol. Ecol. , vol.31 , pp. 207-215
    • Kowalchuk, G.A.1    Stienstra, A.W.2    Heilig, G.H.J.3    Stephen, J.R.4    Woldendrop, J.W.5
  • 34
    • 0028240270 scopus 로고
    • Molecular analysis of enrichment cultures of marine ammonia oxidisers
    • McCaig, A. E., T. M. Embley, and J. I. Prosser. 1994. Molecular analysis of enrichment cultures of marine ammonia oxidisers. FEMS Microbiol. Lett. 120:363-368.
    • (1994) FEMS Microbiol. Lett. , vol.120 , pp. 363-368
    • McCaig, A.E.1    Embley, T.M.2    Prosser, J.I.3
  • 35
    • 0032874459 scopus 로고    scopus 로고
    • Use of molecular and isotopic techniques to monitor the response of autotrophic ammonia-oxidizing populations of the β subdivision of the class Proteobacteria in arable soils to nitrogen fertilizer
    • Mendum, T. A., R. E. Sockett, and P. R. Hirsch. 1999. Use of molecular and isotopic techniques to monitor the response of autotrophic ammonia-oxidizing populations of the β subdivision of the class Proteobacteria in arable soils to nitrogen fertilizer. Appl. Environ. Microbiol. 65:4155-4162.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4155-4162
    • Mendum, T.A.1    Sockett, R.E.2    Hirsch, P.R.3
  • 37
    • 0038656384 scopus 로고    scopus 로고
    • Ammonia-oxidizing bacteria along meadow-to-forest transects in the Oregon Cascade Mountains
    • Mintie, A. T., R. S. Heichen, K. Cromack, D. D. Myrold, and P. J. Bottomley. 2003. Ammonia-oxidizing bacteria along meadow-to-forest transects in the Oregon Cascade Mountains. Appl. Environ. Microbiol. 69:3129-3136.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 3129-3136
    • Mintie, A.T.1    Heichen, R.S.2    Cromack, K.3    Myrold, D.D.4    Bottomley, P.J.5
  • 38
    • 0036242855 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria
    • Nicolaisen, M. H., and N. B. Ramsing. 2002. Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria. J. Microbiol. Methods 50:189-203.
    • (2002) J. Microbiol. Methods , vol.50 , pp. 189-203
    • Nicolaisen, M.H.1    Ramsing, N.B.2
  • 39
    • 0032447802 scopus 로고    scopus 로고
    • Inhibition of nitrification in forest soil by monoterpenes
    • Paavolainen, L., V. Kitunen, and A. Smolander. 1998. Inhibition of nitrification in forest soil by monoterpenes. Plant Soil 205:147-154.
    • (1998) Plant Soil , vol.205 , pp. 147-154
    • Paavolainen, L.1    Kitunen, V.2    Smolander, A.3
  • 42
    • 0034016511 scopus 로고    scopus 로고
    • Quantitative analysis of ammonia oxidising bacteria using competitive PCR
    • Phillips, C. J., E. A. Paul, and J. I. Prosser. 2000. Quantitative analysis of ammonia oxidising bacteria using competitive PCR. FEMS Microbiol. Ecol. 32:167-175.
    • (2000) FEMS Microbiol. Ecol. , vol.32 , pp. 167-175
    • Phillips, C.J.1    Paul, E.A.2    Prosser, J.I.3
  • 43
    • 0034466757 scopus 로고    scopus 로고
    • Phytogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: Implications for molecular diversity surveys
    • Purkhold, U., A. Pommerening-Röser, S. Juretschko, M. C. Schmid, H.-P. Koops, and M. Wagner. 2000. Phytogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys. Appl. Environ. Microbiol. 66:5368-5382.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 5368-5382
    • Purkhold, U.1    Pommerening-Röser, A.2    Juretschko, S.3    Schmid, M.C.4    Koops, H.-P.5    Wagner, M.6
  • 44
    • 0001044345 scopus 로고
    • Identification of heterotrophic nitrification in a Sierran forest soil
    • Schimel, J. P., M. K. Firestone, and K. S. Killham. 1984. Identification of heterotrophic nitrification in a Sierran forest soil. Appl. Environ. Microbiol. 48:802-806.
    • (1984) Appl. Environ. Microbiol. , vol.48 , pp. 802-806
    • Schimel, J.P.1    Firestone, M.K.2    Killham, K.S.3
  • 45
    • 0031904158 scopus 로고    scopus 로고
    • Analysis of β-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing
    • Stephen, J. R., G. A. Kowalchuk, M.-A. V. Bruns, A. E. McCaig, C. J. Phillips, T. M. Embley, and J. I. Prosser. 1998. Analysis of β-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing. Appl. Environ. Microbiol. 64:4147-4154.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4147-4154
    • Stephen, J.R.1    Kowalchuk, G.A.2    Bruns, M.-A.V.3    McCaig, A.E.4    Phillips, C.J.5    Embley, T.M.6    Prosser, J.I.7
  • 46
    • 0029805297 scopus 로고    scopus 로고
    • Molecular diversity of soil and marine 16S rRNA gene sequences related to the β-subgroup ammonia-oxidizing bacteria
    • Stephen, J. R., A. E. McCaig, Z. Smith, J. I. Prosser, and T. M. Embley. 1996. Molecular diversity of soil and marine 16S rRNA gene sequences related to the β-subgroup ammonia-oxidizing bacteria. Appl. Environ. Microbiol. 62:4147-4154.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 4147-4154
    • Stephen, J.R.1    McCaig, A.E.2    Smith, Z.3    Prosser, J.I.4    Embley, T.M.5
  • 48
    • 0033760479 scopus 로고    scopus 로고
    • Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5′-nuclease assays
    • Suzuki, M. T., L. T. Taylor, and E. F. DeLong. 2000. Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5′-nuclease assays. Appl. Environ. Microbiol. 66:4605-4614.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 4605-4614
    • Suzuki, M.T.1    Taylor, L.T.2    DeLong, E.F.3
  • 49
    • 0036135250 scopus 로고    scopus 로고
    • Grassland management regimens reduce small-scale heterogeneity and species diversity of β-proteobacterial ammonia oxidizer populations
    • Webster, G., T. M. Embley, and J. I. Prosser. 2002. Grassland management regimens reduce small-scale heterogeneity and species diversity of β-proteobacterial ammonia oxidizer populations. Appl. Environ. Microbiol. 68:20-30.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 20-30
    • Webster, G.1    Embley, T.M.2    Prosser, J.I.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.