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Volumn 35, Issue 10, 2003, Pages 1337-1347

Liming induces growth of a diverse flora of ammonia-oxidising bacteria in acid spruce forest soil as determined by SSCP and DGGE

Author keywords

16S rDNA; Acid coniferous forest; Ammonia oxidising bacteria; Denaturing gradient gel electrophoresis; Liming; Nitrosospira; Single strand conformation polymorphism

Indexed keywords

AMMONIA; BACTERIA; BIOCHEMISTRY; ELECTROPHORESIS; FORESTRY; GENES; PH EFFECTS; RNA;

EID: 0141786957     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0038-0717(03)00213-X     Document Type: Article
Times cited : (78)

References (41)
  • 3
    • 0018179804 scopus 로고
    • Diversity in the ammonia-oxidizing nitrifier population of a soil
    • Belser, L.W., Schmidt, E.L., 1978. Diversity in the ammonia-oxidizing nitrifier population of a soil. Applied and Environmental Microbiology 36, 584-588.
    • (1978) Applied and Environmental Microbiology , vol.36 , pp. 584-588
    • Belser, L.W.1    Schmidt, E.L.2
  • 4
    • 0019513663 scopus 로고
    • Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli
    • Brosius, J., Dull, T.J., Sleeter, D.D., Noller, H.F., 1981. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. Journal of Molecular Biology 148, 107-127.
    • (1981) Journal of Molecular Biology , vol.148 , pp. 107-127
    • Brosius, J.1    Dull, T.J.2    Sleeter, D.D.3    Noller, H.F.4
  • 6
    • 0036305159 scopus 로고    scopus 로고
    • Nitrosomonas europaea-like bacteria detected as the dominant β-subclass Proteobacteria ammonia oxidisers in reference and limed forest soils
    • Carnol, M., Kowalchuk, G.a., De Boer, W., 2002. Nitrosomonas europaea-like bacteria detected as the dominant β-subclass Proteobacteria ammonia oxidisers in reference and limed forest soils. Soil Biology & Biochemistry 34, 1047-1050.
    • (2002) Soil Biology & Biochemistry , vol.34 , pp. 1047-1050
    • Carnol, M.1    Kowalchuk, G.A.2    De Boer, W.3
  • 8
    • 0027087866 scopus 로고
    • The chemolithotrophic ammonium-oxidizing community in a nitrogen-saturated acid forest soil in relation to pH-dependent nitrifying activity
    • De Boer, W., Tietema, A., Klein Gunnewiek, P.J.A., Laanbroek, H.J., 1992. The chemolithotrophic ammonium-oxidizing community in a nitrogen-saturated acid forest soil in relation to pH-dependent nitrifying activity. Soil Biology & Biochemistry 24, 229-234.
    • (1992) Soil Biology & Biochemistry , vol.24 , pp. 229-234
    • De Boer, W.1    Tietema, A.2    Klein Gunnewiek, P.J.A.3    Laanbroek, H.J.4
  • 10
    • 0029138062 scopus 로고
    • Ammonium-oxidation at low pH by a chemolithotrophic bacterium belonging to the genus Nitrosospira
    • De Boer, W., Klein-Gunnewiek, P.A., Laanbroek, H.J., 1995. Ammonium-oxidation at low pH by a chemolithotrophic bacterium belonging to the genus Nitrosospira. Soil Biology & Biochemistry 27, 127-132.
    • (1995) Soil Biology & Biochemistry , vol.27 , pp. 127-132
    • De Boer, W.1    Klein-Gunnewiek, P.A.2    Laanbroek, H.J.3
  • 11
    • 18344411898 scopus 로고    scopus 로고
    • Impact of dolomite lime on the ground vegetation and on potential net N transformations in Norway spruce (Picea abies (L.) Karst.) and sessile oak (Quercus patraea (Matt.) Lieb.) stands in the Belgian Ardenne
    • Dulière, J.-F., Carnol, M., Dalem, S., Remacle, J., Malaisse, F., 1999. Impact of dolomite lime on the ground vegetation and on potential net N transformations in Norway spruce (Picea abies (L.) Karst.) and sessile oak (Quercus patraea (Matt.) Lieb.) stands in the Belgian Ardenne. Annals of Forest Science 56, 361-370.
    • (1999) Annals of Forest Science , vol.56 , pp. 361-370
    • Dulière, J.-F.1    Carnol, M.2    Dalem, S.3    Remacle, J.4    Malaisse, F.5
  • 12
    • 0001096181 scopus 로고
    • Examination of an acid forest soil for ammonia- and nitrite-oxidizing autotrophic bacteria
    • Hankinson, T.R., Schmidt, E.L., 1984. Examination of an acid forest soil for ammonia- and nitrite-oxidizing autotrophic bacteria. Canadian Journal of Microbiology 30, 1125-1132.
    • (1984) Canadian Journal of Microbiology , vol.30 , pp. 1125-1132
    • Hankinson, T.R.1    Schmidt, E.L.2
  • 13
    • 0034010942 scopus 로고    scopus 로고
    • Analysis of ammonia-oxidizing bacteria populations in acid forest soil during conditions of moisture limitation
    • Hastings, R.C., Butler, C., Singleton, I., Saunders, J.R., McCarthy, A.J., 2000. Analysis of ammonia-oxidizing bacteria populations in acid forest soil during conditions of moisture limitation. Letters in Applied Microbiology 30, 14-18.
    • (2000) Letters in Applied Microbiology , vol.30 , pp. 14-18
    • Hastings, R.C.1    Butler, C.2    Singleton, I.3    Saunders, J.R.4    McCarthy, A.J.5
  • 14
    • 0027184336 scopus 로고
    • The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by analysis of 16S ribosomal RNA gene sequences
    • Head, I.M., Hiorns, W.D., Embley, T.M., McCarthy, A.J., Saunders, J.R., 1993. The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by analysis of 16S ribosomal RNA gene sequences. Journal of General Microbiology 139, 1147-1153.
    • (1993) Journal of General Microbiology , vol.139 , pp. 1147-1153
    • Head, I.M.1    Hiorns, W.D.2    Embley, T.M.3    McCarthy, A.J.4    Saunders, J.R.5
  • 15
    • 0032878687 scopus 로고    scopus 로고
    • Comparison of Nitrosospira strains isolated from terrestrial environments
    • Jiang, Q.Q., Bakken, L.R., 1999. Comparison of Nitrosospira strains isolated from terrestrial environments. FEMS Microbiology Ecology 30, 171-186.
    • (1999) FEMS Microbiology Ecology , vol.30 , pp. 171-186
    • Jiang, Q.Q.1    Bakken, L.R.2
  • 16
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro, H.H., (Ed.), Academic Press, New York
    • Jukes, T.H., Cantor, C.R., 1969. Evolution of protein molecules. In: Munro, H.H., (Ed.), Mammalian Protein Metabolism, Academic Press, New York, pp. 21-132.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 18
    • 0030901922 scopus 로고    scopus 로고
    • Analysis of ammonia-oxidizing bacteria of the β subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments
    • Kowalchuk, G.A., Stephen, J.R., De Boer, W., Prosser, J.I., Embley, T.M., Woldendorp, J.W., 1997. Analysis of ammonia-oxidizing bacteria of the β subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments. Applied and Environmental Microbiology 63, 1489-1497.
    • (1997) Applied and Environmental Microbiology , vol.63 , pp. 1489-1497
    • Kowalchuk, G.A.1    Stephen, J.R.2    De Boer, W.3    Prosser, J.I.4    Embley, T.M.5    Woldendorp, J.W.6
  • 21
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction - Amplified genes coding for 16S rRNA
    • Muyzer, G., De Waal, E.C., Uitterlinden, A.G., 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction - amplified genes coding for 16S rRNA. Applied and Environmental Microbiology 59, 695-700.
    • (1993) Applied and Environmental Microbiology , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 22
    • 0029758249 scopus 로고    scopus 로고
    • Nitrate in soil water in three Norway spruce stands in southwest Sweden as related to N-deposition and soil, stand, and foliage properties
    • Nohrstedt, H.-Ö., Sikström, U., Ring, E., Näsholm, T., Högberg, P., Persson, T., 1996. Nitrate in soil water in three Norway spruce stands in southwest Sweden as related to N-deposition and soil, stand, and foliage properties. Canadian Journal of Forest Research 26, 836-848.
    • (1996) Canadian Journal of Forest Research , vol.26 , pp. 836-848
    • Nohrstedt, H.-Ö.1    Sikström, U.2    Ring, E.3    Näsholm, T.4    Högberg, P.5    Persson, T.6
  • 23
    • 0036134279 scopus 로고    scopus 로고
    • Chemolithoautotrophic nitrifiers in the phyllosphere of a spruce ecosystem receiving high atmospheric nitrogen input
    • Papen, H., Geßler, A., Zumbusch, E., Rennenberg, H., 2002. Chemolithoautotrophic nitrifiers in the phyllosphere of a spruce ecosystem receiving high atmospheric nitrogen input. Current Microbiology 44, 56-60.
    • (2002) Current Microbiology , vol.44 , pp. 56-60
    • Papen, H.1    Geßler, A.2    Zumbusch, E.3    Rennenberg, H.4
  • 24
    • 0028794168 scopus 로고
    • Nitrogen mineralization and potential nitrification at different depths in acid forest soil
    • Persson, T., Wirén, A., 1995. Nitrogen mineralization and potential nitrification at different depths in acid forest soil. Plant and Soil 168/ 169, 55-65.
    • (1995) Plant and Soil , vol.168-169 , pp. 55-65
    • Persson, T.1    Wirén, A.2
  • 25
    • 0025570401 scopus 로고
    • Effects of liming on carbon and nitrogen mineralization in coniferous forests
    • Persson, T., Wirén, A., Andersson, S., 1991. Effects of liming on carbon and nitrogen mineralization in coniferous forests. Water, Air and Soil Pollution 54, 351-364.
    • (1991) Water, Air and Soil Pollution , vol.54 , pp. 351-364
    • Persson, T.1    Wirén, A.2    Andersson, S.3
  • 26
    • 0029633583 scopus 로고
    • Pools and fluxes of carbon and nitrogen in 40-year-old forest liming experiments in southern Sweden
    • Persson, T., Rudebeck, A., Wirén, A., 1995. Pools and fluxes of carbon and nitrogen in 40-year-old forest liming experiments in southern Sweden. Water, Air and Soil Pollution 85, 901-906.
    • (1995) Water, Air and Soil Pollution , vol.85 , pp. 901-906
    • Persson, T.1    Rudebeck, A.2    Wirén, A.3
  • 27
    • 0034105806 scopus 로고    scopus 로고
    • Succession of microbial communities during hot composting as detected by PCR-single-strand-conformation-polymorphism-based genetic profiles of small-subunit rRNA genes
    • Peters, S., Koschinsky, S., Schwieger, F., Tebbe, C.C., 2000. Succession of microbial communities during hot composting as detected by PCR-single-strand-conformation-polymorphism-based genetic profiles of small-subunit rRNA genes. Applied and Environmental Microbiology 66, 930-936.
    • (2000) Applied and Environmental Microbiology , vol.66 , pp. 930-936
    • Peters, S.1    Koschinsky, S.2    Schwieger, F.3    Tebbe, C.C.4
  • 28
    • 0034466757 scopus 로고    scopus 로고
    • Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: Implications for molecular diversity surveys
    • Purkhold, U., Pommerening-Röser, A., Juretschko, S., Schmid, M.C., Koops, H.-P., Wagner, M., 2000. Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys. Applied and Environmental Microbiology 66, 5368-5382.
    • (2000) Applied and Environmental Microbiology , vol.66 , pp. 5368-5382
    • Purkhold, U.1    Pommerening-Röser, A.2    Juretschko, S.3    Schmid, M.C.4    Koops, H.-P.5    Wagner, M.6
  • 29
    • 0032416742 scopus 로고    scopus 로고
    • Nitrification in organic and mineral soil layers in coniferous forests in response to acidity
    • Rudebeck, A., Persson, T., 1998. Nitrification in organic and mineral soil layers in coniferous forests in response to acidity. Environmental Pollution 102, 377-381.
    • (1998) Environmental Pollution , vol.102 , pp. 377-381
    • Rudebeck, A.1    Persson, T.2
  • 31
    • 0031764376 scopus 로고    scopus 로고
    • A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis
    • Schwieger, F., Tebbe, C.C., 1998. A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis. Applied and Environmental Microbiology 64, 4870-4876.
    • (1998) Applied and Environmental Microbiology , vol.64 , pp. 4870-4876
    • Schwieger, F.1    Tebbe, C.C.2
  • 32
    • 0033861401 scopus 로고    scopus 로고
    • Effect of field inoculation with Sinorhizobium meliloti L33 on the composition of bacterial communities in rhizospheres of a target plant (Medicago sativa) and a non-target plant (Chenopodium album) - Linking of 16S rRNA gene-based single-strand conformation polymorphism community profiles to the diversity of cultivated bacteria
    • Schwieger, F., Tebbe, C.C., 2000. Effect of field inoculation with Sinorhizobium meliloti L33 on the composition of bacterial communities in rhizospheres of a target plant (Medicago sativa) and a non-target plant (Chenopodium album) - Linking of 16S rRNA gene-based single-strand conformation polymorphism community profiles to the diversity of cultivated bacteria. Applied and Environmental Microbiology 66, 3556-3565.
    • (2000) Applied and Environmental Microbiology , vol.66 , pp. 3556-3565
    • Schwieger, F.1    Tebbe, C.C.2
  • 33
    • 0027331050 scopus 로고
    • Nitrous oxide release from spruce forest soil: Relationships with nitrification, methane uptake, temperature, moisture and fertilization
    • Sitaula, B.K., Bakken, L.R., 1993. Nitrous oxide release from spruce forest soil: relationships with nitrification, methane uptake, temperature, moisture and fertilization. Soil Biology & Biochemistry 25, 1415-1421.
    • (1993) Soil Biology & Biochemistry , vol.25 , pp. 1415-1421
    • Sitaula, B.K.1    Bakken, L.R.2
  • 35
    • 0029805297 scopus 로고    scopus 로고
    • Molecular diversity of soil and marine 16S rRNA gene sequences related to β-subgroup ammonia-oxidizing bacteria
    • Stephen, J.R., McCaig, A.E., Smith, Z., Prosser, J.I., Embley, T.M., 1996. Molecular diversity of soil and marine 16S rRNA gene sequences related to β-subgroup ammonia-oxidizing bacteria. Applied and Environmental Microbiology 62, 4147-4154.
    • (1996) Applied and Environmental Microbiology , vol.62 , pp. 4147-4154
    • Stephen, J.R.1    McCaig, A.E.2    Smith, Z.3    Prosser, J.I.4    Embley, T.M.5
  • 36
    • 0031904158 scopus 로고    scopus 로고
    • Analysis of β-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing
    • Stephen, J.R., Kowalchuk, G.A., Bruns, M.-A.V., McCaig, A.E., Phillips, C.J., Embley, T.M., Prosser, J.I., 1998. Analysis of β-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing. Applied and Environmental Microbiology 64, 2958-2965.
    • (1998) Applied and Environmental Microbiology , vol.64 , pp. 2958-2965
    • Stephen, J.R.1    Kowalchuk, G.A.2    Bruns, M.-A.V.3    McCaig, A.E.4    Phillips, C.J.5    Embley, T.M.6    Prosser, J.I.7
  • 37
    • 0027202733 scopus 로고
    • Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and yeast
    • Tebbe, C.C., Vahjen, W., 1993. Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and yeast. Applied and Environmental Microbiology 59, 2657-2665.
    • (1993) Applied and Environmental Microbiology , vol.59 , pp. 2657-2665
    • Tebbe, C.C.1    Vahjen, W.2
  • 38
    • 0026452892 scopus 로고
    • Nitrate production in nitrogen-saturated acid forest soils: Vertical distribution and characteristics
    • Tietema, A., De Boer, W., Riemer, L., Verstraten, J.M., 1992. Nitrate production in nitrogen-saturated acid forest soils: vertical distribution and characteristics. Soil Biology & Biochemistry 24, 235-240.
    • (1992) Soil Biology & Biochemistry , vol.24 , pp. 235-240
    • Tietema, A.1    De Boer, W.2    Riemer, L.3    Verstraten, J.M.4
  • 39
    • 0028827139 scopus 로고
    • Broad-range PCR amplification and DNA sequence analysis reveals variable motifs in 16S rRNA genes of Mobiluncus species
    • Tiveljung, A., Backström, J., Forsum, U., Monstein, H.-J., 1995. Broad-range PCR amplification and DNA sequence analysis reveals variable motifs in 16S rRNA genes of Mobiluncus species. APMIS 103, 755-763.
    • (1995) APMIS , vol.103 , pp. 755-763
    • Tiveljung, A.1    Backström, J.2    Forsum, U.3    Monstein, H.-J.4
  • 40
    • 0028509254 scopus 로고
    • TREECON for Windows: A software package for the construction and drawing of evolutionary trees for Microsoft Windows environment
    • Van de Peer, Y., De Wachter, R., 1994. TREECON for Windows: a software package for the construction and drawing of evolutionary trees for Microsoft Windows environment. Computational Applications in Bioscience 10, 569-570.
    • (1994) Computational Applications in Bioscience , vol.10 , pp. 569-570
    • Van De Peer, Y.1    De Wachter, R.2


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