메뉴 건너뛰기




Volumn 7, Issue 8, 2011, Pages 519-527

Aptamers for allosteric regulation

Author keywords

[No Author keywords available]

Indexed keywords

APTAMER; OLIGONUCLEOTIDE;

EID: 79960487242     PISSN: 15524450     EISSN: 15524469     Source Type: Journal    
DOI: 10.1038/nchembio.609     Document Type: Review
Times cited : (159)

References (101)
  • 1
    • 79551521096 scopus 로고    scopus 로고
    • Engineering protein switches: Sensors, regulators, and spare parts for biology and biotechnology
    • Golynskiy, M.V., Koay, M.S., Vinkenborg, J.L. & Merkx, M. Engineering protein switches: sensors, regulators, and spare parts for biology and biotechnology. ChemBioChem 12, 353-361 (2011
    • (2011) ChemBioChem , vol.12 , pp. 353-361
    • Golynskiy, M.V.1    Koay, M.S.2    Vinkenborg, J.L.3    Merkx, M.4
  • 2
    • 70349786346 scopus 로고    scopus 로고
    • The chemical biology of aptamers
    • Mayer, G. The chemical biology of aptamers. Angew. Chem. Int. Edn Engl. 48, 2672-2689 (2009
    • (2009) Angew. Chem. Int. Edn Engl. , vol.48 , pp. 2672-2689
    • Mayer, G.1
  • 3
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk, C. & Gold, L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249, 505-510 (1990
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 4
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington, A.D. & Szostak, J.W. In vitro selection of RNA molecules that bind specific ligands. Nature 346, 818-822 (1990
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 5
    • 35148840942 scopus 로고    scopus 로고
    • Functional aptamers and aptazymes in biotechnology, diagnostics, and therapy
    • DOI 10.1021/cr0306743
    • Famulok, M., Hartig, J.S. & Mayer, G. Functional aptamers and aptazymes in biotechnology, diagnostics, and therapy. Chem. Rev. 107, 3715-3743 (2007 (Pubitemid 47534316)
    • (2007) Chemical Reviews , vol.107 , Issue.9 , pp. 3715-3743
    • Famulok, M.1    Hartig, J.S.2    Mayer, G.3
  • 7
    • 0031171217 scopus 로고    scopus 로고
    • Rational design of allosteric ribozymes
    • Tang, J. & Breaker, R.R. Rational design of allosteric ribozymes. Chem. Biol. 4, 453-459 (1997 (Pubitemid 27288710)
    • (1997) Chemistry and Biology , vol.4 , Issue.6 , pp. 453-459
    • Tang, J.1    Breaker, R.R.2
  • 9
    • 33745685059 scopus 로고    scopus 로고
    • Flipping riboswitches
    • Nudler, E. Flipping riboswitches. Cell 126, 19-22 (2006
    • (2006) Cell , vol.126 , pp. 19-22
    • Nudler, E.1
  • 10
    • 0142075327 scopus 로고    scopus 로고
    • Genetic control by metabolite-binding riboswitches
    • DOI 10.1002/cbic.200300685
    • Winkler, W.C. & Breaker, R.R. Genetic control by metabolite-binding riboswitches. ChemBioChem 4, 1024-1032 (2003 (Pubitemid 37267591)
    • (2003) ChemBioChem , vol.4 , Issue.10 , pp. 1024-1032
    • Winkler, W.C.1    Breaker, R.R.2
  • 11
    • 66249097058 scopus 로고    scopus 로고
    • Functional nucleic acid sensors
    • Liu, J., Cao, Z. & Lu, Y. Functional nucleic acid sensors. Chem. Rev. 109, 1948-1998 (2009
    • (2009) Chem. Rev. , vol.109 , pp. 1948-1998
    • Liu, J.1    Cao, Z.2    Lu, Y.3
  • 12
    • 18044372281 scopus 로고    scopus 로고
    • Analytical applications of aptamers
    • DOI 10.1016/j.bios.2004.11.006, 20th Anniversary of Biosendors and Bioelectronics
    • Tombelli, S., Minunni, M. & Mascini, M. Analytical applications of aptamers. Biosens. Bioelectron. 20, 2424-2434 (2005 (Pubitemid 40602182)
    • (2005) Biosensors and Bioelectronics , vol.20 , Issue.12 , pp. 2424-2434
    • Tombelli, S.1    Minunni, M.2    Mascini, M.3
  • 13
    • 0033485863 scopus 로고    scopus 로고
    • Nucleic acid molecular switches
    • DOI 10.1016/S0167-7799(99)01383-9, PII S0167779999013839
    • Soukup, G.A. & Breaker, R.R. Nucleic acid molecular switches. Trends Biotechnol. 17, 469-476 (1999 (Pubitemid 29525593)
    • (1999) Trends in Biotechnology , vol.17 , Issue.12 , pp. 469-476
    • Soukup, G.A.1    Breaker, R.R.2
  • 14
    • 17144380787 scopus 로고    scopus 로고
    • Allosteric aptamers and aptazymes as probes for screening approaches
    • Famulok, M. Allosteric aptamers and aptazymes as probes for screening approaches. Curr. Opin. Mol. Ther. 7, 137-143 (2005 (Pubitemid 40514683)
    • (2005) Current Opinion in Molecular Therapeutics , vol.7 , Issue.2 , pp. 137-143
    • Famulok, M.1
  • 15
    • 33846526795 scopus 로고    scopus 로고
    • RNA ligands that distinguish metabolite-induced conformations in the TPP riboswitch
    • DOI 10.1002/anie.200603166
    • Mayer, G., Raddatz, M.S., Grunwald, J.D. & Famulok, M. RNA ligands that distinguish metabolite-induced conformations in the TPP riboswitch. Angew. Chem. Int. Edn Engl. 46, 557-560 (2007 (Pubitemid 46159196)
    • (2007) Angewandte Chemie - International Edition , vol.46 , Issue.4 , pp. 557-560
    • Mayer, G.1    Raddatz, M.-S.L.2    Grunwald, J.D.3    Famulok, M.4
  • 16
    • 34547116896 scopus 로고    scopus 로고
    • Conformational changes in the expression domain of the Escherichia coli thiM riboswitch
    • DOI 10.1093/nar/gkm300
    • Rentmeister, A., Mayer, G., Kuhn, N. & Famulok, M. Conformational changes in the expression domain of the Escherichia coli thiM riboswitch. Nucleic Acids Res. 35, 3713-3722 (2007 (Pubitemid 47244664)
    • (2007) Nucleic Acids Research , vol.35 , Issue.11 , pp. 3713-3722
    • Rentmeister, A.1    Mayer, G.2    Kuhn, N.3    Famulok, M.4
  • 19
    • 43249088030 scopus 로고    scopus 로고
    • Simple fluorescent sensors engineered with catalytic DNA 'MgZ' based on a non-classic allosteric design
    • Chiuman, W. & Li, Y. Simple fluorescent sensors engineered with catalytic DNA 'MgZ' based on a non-classic allosteric design. PLoS ONE 2, e1224 (2007
    • (2007) PLoS ONE , vol.2
    • Chiuman, W.1    Li, Y.2
  • 20
    • 0036795275 scopus 로고    scopus 로고
    • A biosensor for theophylline based on fluorescence detection of ligand-induced hammerhead ribozyme cleavage
    • Sekella, P.T., Rueda, D. & Walter, N.G. A biosensor for theophylline based on fluorescence detection of ligand-induced hammerhead ribozyme cleavage. RNA 8, 1242-1252 (2002
    • (2002) RNA , vol.8 , pp. 1242-1252
    • Sekella, P.T.1    Rueda, D.2    Walter, N.G.3
  • 22
    • 33845665430 scopus 로고    scopus 로고
    • DNA aptamer-mediated regulation of the hairpin ribozyme by human α-thrombin
    • DOI 10.1016/j.bcmd.2006.10.007, PII S1079979606002324
    • Najafi-Shoushtari, S.H. & Famulok, M. DNA aptamer-mediated regulation of the hairpin ribozyme by human alpha-thrombin. Blood Cells Mol. Dis. 38, 19-24 (2007 (Pubitemid 44960867)
    • (2007) Blood Cells, Molecules, and Diseases , vol.38 , Issue.1 , pp. 19-24
    • Najafi-Shoushtari, S.H.1    Famulok, M.2
  • 23
    • 2942670347 scopus 로고    scopus 로고
    • Sensing complex regulatory networks by conformationally controlled hairpin ribozymes
    • DOI 10.1093/nar/gkh643
    • Najafi-Shoushtari, S.H., Mayer, G. & Famulok, M. Sensing complex regulatory networks by conformationally controlled hairpin ribozymes. Nucleic Acids Res. 32, 3212-3219 (2004 (Pubitemid 39023011)
    • (2004) Nucleic Acids Research , vol.32 , Issue.10 , pp. 3212-3219
    • Najafi-Shoushtari, S.H.1    Mayer, G.2    Famulok, M.3
  • 24
    • 38349121586 scopus 로고    scopus 로고
    • Programming biomolecular self-assembly pathways
    • Yin, P., Choi, H.M., Calvert, C.R. & Pierce, N.A. Programming biomolecular self-assembly pathways. Nature 451, 318-322 (2008
    • (2008) Nature , vol.451 , pp. 318-322
    • Yin, P.1    Choi, H.M.2    Calvert, C.R.3    Pierce, N.A.4
  • 25
    • 78149287963 scopus 로고    scopus 로고
    • Programmable in situ amplification for multiplexed imaging of mRNA expression
    • Choi, H.M. et al. Programmable in situ amplification for multiplexed imaging of mRNA expression. Nat. Biotechnol. 28, 1208-1212 (2010
    • (2010) Nat. Biotechnol. , vol.28 , pp. 1208-1212
    • Choi, H.M.1
  • 26
    • 1542408632 scopus 로고    scopus 로고
    • Adenosine-Dependent Assembly of Aptazyme-Functionalized Gold Nanoparticles and Its Application as a Colorimetric Biosensor
    • DOI 10.1021/ac0351769
    • Liu, J. & Lu, Y. Adenosine-dependent assembly of aptazyme- functionalized gold nanoparticles and its application as a colorimetric biosensor. Anal. Chem. 76, 1627-1632 (2004 (Pubitemid 38338406)
    • (2004) Analytical Chemistry , vol.76 , Issue.6 , pp. 1627-1632
    • Liu, J.1    Lu, Y.2
  • 27
    • 33745818513 scopus 로고    scopus 로고
    • Smart nanomaterials responsive to multiple chemical stimuli with controllable cooperativity
    • DOI 10.1002/adma.200600525
    • Liu, J. & Lu, Y. Smart nanomaterials responsive to multiple chemical stimuli with controllable cooperativity. Adv. Mater. 18, 1667-1671 (2006 (Pubitemid 44035662)
    • (2006) Advanced Materials , vol.18 , Issue.13 , pp. 1667-1671
    • Liu, J.1    Lu, Y.2
  • 28
    • 33845492136 scopus 로고    scopus 로고
    • A simple and sensitive "dipstick" test in serum based on lateral flow separation of aptamer-linked nanostructures
    • DOI 10.1002/anie.200603106
    • Liu, J., Mazumdar, D. & Lu, Y. A simple and sensitive 'dipstick' test in serum based on lateral flow separation of aptamer-linked nanostructures. Angew. Chem. Int. Edn Engl. 45, 7955-7959 (2006 (Pubitemid 44912750)
    • (2006) Angewandte Chemie - International Edition , vol.45 , Issue.47 , pp. 7955-7959
    • Liu, J.1    Mazumdar, D.2    Lu, Y.3
  • 29
    • 76949091607 scopus 로고    scopus 로고
    • Easy-to-use dipstick tests for detection of lead in paints using non-cross-linked gold nanoparticle- DNAzyme conjugates
    • Mazumdar, D., Liu, J., Lu, G., Zhou, J. & Lu, Y. Easy-to-use dipstick tests for detection of lead in paints using non-cross-linked gold nanoparticle- DNAzyme conjugates. Chem. Commun. (Camb.) 46, 1416-1418 (2010
    • (2010) Chem. Commun. (Camb.) , vol.46 , pp. 1416-1418
    • Mazumdar, D.1    Liu, J.2    Lu, G.3    Zhou, J.4    Lu, Y.5
  • 31
    • 0032955410 scopus 로고    scopus 로고
    • In vitro selection of an allosteric ribozyme that transduces analytes to amplicons
    • DOI 10.1038/5236
    • Robertson, M.P. & Ellington, A.D. In vitro selection of an allosteric ribozyme that transduces analytes to amplicons. Nat. Biotechnol. 17, 62-66 (1999 (Pubitemid 29037212)
    • (1999) Nature Biotechnology , vol.17 , Issue.1 , pp. 62-66
    • Robertson, M.P.1    Ellington, A.D.2
  • 32
    • 13944274817 scopus 로고    scopus 로고
    • Using a deoxyribozyme ligase and rolling circle amplification to detect a non-nucleic acid analyte, ATP
    • DOI 10.1021/ja043490u
    • Cho, E.J., Yang, L., Levy, M. & Ellington, A.D. Using a deoxyribozyme ligase and rolling circle amplification to detect a non-nucleic acid analyte, ATP. J. Am. Chem. Soc. 127, 2022-2023 (2005 (Pubitemid 40270487)
    • (2005) Journal of the American Chemical Society , vol.127 , Issue.7 , pp. 2022-2023
    • Cho, E.J.1    Yanq, L.2    Lew, M.3    Ellinqton, A.D.4
  • 33
    • 8844224949 scopus 로고    scopus 로고
    • Cross-catalytic replication of an RNA ligase ribozyme
    • DOI 10.1016/j.chembiol.2004.08.021, PII S1074552104002777
    • Kim, D.E. & Joyce, G.F. Cross-catalytic replication of an RNA ligase ribozyme. Chem. Biol. 11, 1505-1512 (2004 (Pubitemid 39527277)
    • (2004) Chemistry and Biology , vol.11 , Issue.11 , pp. 1505-1512
    • Kim, D.-E.1    Joyce, G.F.2
  • 34
    • 61349193830 scopus 로고    scopus 로고
    • Self-sustained replication of an RNA enzyme
    • Lincoln, T.A. & Joyce, G.F. Self-sustained replication of an RNA enzyme. Science 323, 1229-1232 (2009
    • (2009) Science , vol.323 , pp. 1229-1232
    • Lincoln, T.A.1    Joyce, G.F.2
  • 35
    • 62149112116 scopus 로고    scopus 로고
    • Autocatalytic aptazymes enable ligand-dependent exponential amplification of RNA
    • Lam, B.J. & Joyce, G.F. Autocatalytic aptazymes enable ligand-dependent exponential amplification of RNA. Nat. Biotechnol. 27, 288-292 (2009
    • (2009) Nat. Biotechnol. , vol.27 , pp. 288-292
    • Lam, B.J.1    Joyce, G.F.2
  • 36
    • 79952267368 scopus 로고    scopus 로고
    • An isothermal system that couples ligand-dependent catalysis to ligand-independent exponential amplification
    • Lam, B.J. & Joyce, G.F. An isothermal system that couples ligand-dependent catalysis to ligand-independent exponential amplification. J. Am. Chem. Soc. 133, 3191-3197 (2011
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 3191-3197
    • Lam, B.J.1    Joyce, G.F.2
  • 37
    • 0032169981 scopus 로고    scopus 로고
    • DNA-enhanced peroxidase activity of a DNA aptamer-hemin complex
    • Travascio, P., Li, Y. & Sen, D. DNA-enhanced peroxidase activity of a DNA-aptamer-hemin complex. Chem. Biol. 5, 505-517 (1998 (Pubitemid 28436727)
    • (1998) Chemistry and Biology , vol.5 , Issue.9 , pp. 505-517
    • Travascio, P.1    Li, Y.2    Sen, D.3
  • 38
    • 77952978237 scopus 로고    scopus 로고
    • Amplified biosensing using the horseradish peroxidase-mimicking DNAzyme as an electrocatalyst
    • Pelossof, G., Tel-Vered, R., Elbaz, J. & Willner, I. Amplified biosensing using the horseradish peroxidase-mimicking DNAzyme as an electrocatalyst. Anal. Chem. 82, 4396-4402 (2010
    • (2010) Anal. Chem. , vol.82 , pp. 4396-4402
    • Pelossof, G.1    Tel-Vered, R.2    Elbaz, J.3    Willner, I.4
  • 39
    • 70350637327 scopus 로고    scopus 로고
    • Aptamer-DNAzyme hairpins for amplified biosensing
    • Teller, C., Shimron, S. & Willner, I. Aptamer-DNAzyme hairpins for amplified biosensing. Anal. Chem. 81, 9114-9119 (2009
    • (2009) Anal. Chem. , vol.81 , pp. 9114-9119
    • Teller, C.1    Shimron, S.2    Willner, I.3
  • 40
    • 76849107037 scopus 로고    scopus 로고
    • Lead(II)-induced allosteric G-quadruplex DNAzyme as a colorimetric and chemiluminescence sensor for highly sensitive and selective Pb2+ detection
    • Li, T., Wang, E. & Dong, S. Lead(II)-induced allosteric G-quadruplex DNAzyme as a colorimetric and chemiluminescence sensor for highly sensitive and selective Pb2+ detection. Anal. Chem. 82, 1515-1520 (2010
    • (2010) Anal. Chem. , vol.82 , pp. 1515-1520
    • Li, T.1    Wang, E.2    Dong, S.3
  • 41
    • 48249157898 scopus 로고    scopus 로고
    • G-quadruplex-based DNAzyme for facile colorimetric detection of thrombin
    • Li, T., Wang, E. & Dong, S. G-quadruplex-based DNAzyme for facile colorimetric detection of thrombin. Chem. Commun. (Camb.) 3654-3656 (2008
    • (2008) Chem. Commun. (Camb.) , pp. 3654-3656
    • Li, T.1    Wang, E.2    Dong, S.3
  • 42
    • 64649087166 scopus 로고    scopus 로고
    • Label-free colorimetric detection of aqueous mercury ion (Hg2+) using Hg2+-modulated G-quadruplex-based DNAzymes
    • Li, T., Dong, S. & Wang, E. Label-free colorimetric detection of aqueous mercury ion (Hg2+) using Hg2+-modulated G-quadruplex-based DNAzymes. Anal. Chem. 81, 2144-2149 (2009
    • (2009) Anal. Chem. , vol.81 , pp. 2144-2149
    • Li, T.1    Dong, S.2    Wang, E.3
  • 43
    • 56849099031 scopus 로고    scopus 로고
    • Rational design of an optical adenosine sensor by conjugating a DNA aptamer with split DNAzyme halves
    • Lu, N., Shao, C. & Deng, Z. Rational design of an optical adenosine sensor by conjugating a DNA aptamer with split DNAzyme halves. Chem. Commun. (Camb.) 6161-6163 (2008
    • (2008) Chem. Commun. (Camb.) , pp. 6161-6163
    • Lu, N.1    Shao, C.2    Deng, Z.3
  • 44
    • 70349330339 scopus 로고    scopus 로고
    • Colorimetric Hg2+ detection with a label-free and fully DNA-structured sensor assembly incorporating G-quadruplex halves
    • Lu, N., Shao, C. & Deng, Z. Colorimetric Hg2+ detection with a label-free and fully DNA-structured sensor assembly incorporating G-quadruplex halves. Analyst (Lond.) 134, 1822-1825 (2009
    • (2009) Analyst (Lond.) , vol.134 , pp. 1822-1825
    • Lu, N.1    Shao, C.2    Deng, Z.3
  • 45
    • 63749132434 scopus 로고    scopus 로고
    • Cooperative multicomponent self-assembly of nucleic acid structures for the activation of DNAzyme cascades: A paradigm for DNA sensors and aptasensors
    • Elbaz, J., Moshe, M., Shlyahovsky, B. & Willner, I. Cooperative multicomponent self-assembly of nucleic acid structures for the activation of DNAzyme cascades: a paradigm for DNA sensors and aptasensors. Chemistry 15, 3411-3418 (2009
    • (2009) Chemistry , vol.15 , pp. 3411-3418
    • Elbaz, J.1    Moshe, M.2    Shlyahovsky, B.3    Willner, I.4
  • 46
    • 44449122485 scopus 로고    scopus 로고
    • Synthesis of new fluorogenic cyanine dyes and incorporation into RNA fluoromodules
    • Constantin, T.P. et al. Synthesis of new fluorogenic cyanine dyes and incorporation into RNA fluoromodules. Org. Lett. 10, 1561-1564 (2008
    • (2008) Org. Lett. , vol.10 , pp. 1561-1564
    • Constantin, T.P.1
  • 47
    • 79951979043 scopus 로고    scopus 로고
    • Modular blue fluorescent RNA sensors for label-free detection of target molecules
    • Furutani, C., Shinomiya, K., Aoyama, Y., Yamada, K. & Sando, S. Modular blue fluorescent RNA sensors for label-free detection of target molecules. Mol. Biosyst. 6, 1569-1571 (2010
    • (2010) Mol. Biosyst. , vol.6 , pp. 1569-1571
    • Furutani, C.1    Shinomiya, K.2    Aoyama, Y.3    Yamada, K.4    Sando, S.5
  • 48
    • 33646729975 scopus 로고    scopus 로고
    • Aptameric enzyme subunit for biosensing based on enzymatic activity measurement
    • Yoshida, W., Sode, K. & Ikebukuro, K. Aptameric enzyme subunit for biosensing based on enzymatic activity measurement. Anal. Chem. 78, 3296-3303 (2006
    • (2006) Anal. Chem. , vol.78 , pp. 3296-3303
    • Yoshida, W.1    Sode, K.2    Ikebukuro, K.3
  • 49
    • 33144485619 scopus 로고    scopus 로고
    • Allosteric aptamers controlling a signal amplification cascade allow visual detection of molecules at picomolar concentrations
    • DOI 10.1021/bi052106i
    • Chelyapov, N. Allosteric aptamers controlling a signal amplification cascade allow visual detection of molecules at picomolar concentrations. Biochemistry 45, 2461-2466 (2006 (Pubitemid 43271347)
    • (2006) Biochemistry , vol.45 , Issue.7 , pp. 2461-2466
    • Chelyapov, N.1
  • 51
    • 27944493648 scopus 로고    scopus 로고
    • Computational design and experimental validation of oligonucleotide- sensing allosteric ribozymes
    • DOI 10.1038/nbt1155, PII N1155
    • Penchovsky, R. & Breaker, R.R. Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes. Nat. Biotechnol. 23, 1424-1433 (2005 (Pubitemid 41679396)
    • (2005) Nature Biotechnology , vol.23 , Issue.11 , pp. 1424-1433
    • Penchovsky, R.1    Breaker, R.R.2
  • 52
    • 0042360338 scopus 로고    scopus 로고
    • A deoxyribozyme-based molecular automaton
    • DOI 10.1038/nbt862
    • Stojanovic, M.N. & Stefanovic, D. A deoxyribozyme-based molecular automaton. Nat. Biotechnol. 21, 1069-1074 (2003 (Pubitemid 37064737)
    • (2003) Nature Biotechnology , vol.21 , Issue.9 , pp. 1069-1074
    • Stojanovic, M.N.1    Stefanovic, D.2
  • 54
    • 77955230397 scopus 로고    scopus 로고
    • DNA computing circuits using libraries of DNAzyme subunits
    • Elbaz, J. et al. DNA computing circuits using libraries of DNAzyme subunits. Nat. Nanotechnol. 5, 417-422 (2010
    • (2010) Nat. Nanotechnol. , vol.5 , pp. 417-422
    • Elbaz, J.1
  • 55
    • 33845754075 scopus 로고    scopus 로고
    • Photonic boolean logic gates based on DNA aptamers
    • DOI 10.1039/b613201d
    • Yoshida, W. & Yokobayashi, Y. Photonic Boolean logic gates based on DNA aptamers. Chem. Commun. 2007, 195-197 (2007 (Pubitemid 44974586)
    • (2007) Chemical Communications , Issue.2 , pp. 195-197
    • Yoshida, W.1    Yokobayashi, Y.2
  • 57
    • 54249113318 scopus 로고    scopus 로고
    • Higher-order cellular information processing with synthetic RNA devices
    • Win, M.N. & Smolke, C.D. Higher-order cellular information processing with synthetic RNA devices. Science 322, 456-460 (2008
    • (2008) Science , vol.322 , pp. 456-460
    • Win, M.N.1    Smolke, C.D.2
  • 60
    • 0034802897 scopus 로고    scopus 로고
    • Intramers as promising new tools in functional proteomics
    • DOI 10.1016/S1074-5521(01)00070-9, PII S1074552101000709
    • Famulok, M., Blind, M. & Mayer, G. Intramers as promising new tools in functional proteomics. Chem. Biol. 8, 931-939 (2001 (Pubitemid 32918923)
    • (2001) Chemistry and Biology , vol.8 , Issue.10 , pp. 931-939
    • Famulok, M.1    Blind, M.2    Mayer, G.3
  • 61
    • 35148861084 scopus 로고    scopus 로고
    • B-catenin regulates multiple steps of RNA metabolism as revealed by the RNA aptamer in colon cancer cells
    • Lee, H.K. et al. B-catenin regulates multiple steps of RNA metabolism as revealed by the RNA aptamer in colon cancer cells. Cancer Res. 67, 9315-9321 (2007
    • (2007) Cancer Res. , vol.67 , pp. 9315-9321
    • Lee, H.K.1
  • 62
    • 0032500736 scopus 로고    scopus 로고
    • Controlling gene expression in living cells through small molecule-RNA interactions
    • DOI 10.1126/science.282.5387.296
    • Werstuck, G. & Green, M.R. Controlling gene expression in living cells through small molecule-RNA interactions. Science 282, 296-298 (1998 (Pubitemid 28487202)
    • (1998) Science , vol.282 , Issue.5387 , pp. 296-298
    • Werstuck, G.1    Green, M.R.2
  • 63
    • 54349126909 scopus 로고    scopus 로고
    • Artificial riboswitches: Synthetic mRNA-based regulators of gene expression
    • Wieland, M. & Hartig, J.S. Artificial riboswitches: synthetic mRNA-based regulators of gene expression. ChemBioChem 9, 1873-1878 (2008
    • (2008) ChemBioChem , vol.9 , pp. 1873-1878
    • Wieland, M.1    Hartig, J.S.2
  • 64
    • 85011936087 scopus 로고    scopus 로고
    • Engineered riboswitches: Overview, problems and trends
    • Suess, B. & Weigand, J.E. Engineered riboswitches: overview, problems and trends. RNA Biol. 5, 24-29 (2008
    • (2008) RNA Biol. , vol.5 , pp. 24-29
    • Suess, B.1    Weigand, J.E.2
  • 65
    • 62649171253 scopus 로고    scopus 로고
    • Frameworks for programming biological function through RNA parts and devices
    • Win, M.N., Liang, J.C. & Smolke, C.D. Frameworks for programming biological function through RNA parts and devices. Chem. Biol. 16, 298-310 (2009
    • (2009) Chem. Biol. , vol.16 , pp. 298-310
    • Win, M.N.1    Liang, J.C.2    Smolke, C.D.3
  • 67
    • 75749138167 scopus 로고    scopus 로고
    • Emerging applications of riboswitches in chemical biology
    • Topp, S. & Gallivan, J.P. Emerging applications of riboswitches in chemical biology. ACS Chem. Biol. 5, 139-148 (2010
    • (2010) ACS Chem. Biol. , vol.5 , pp. 139-148
    • Topp, S.1    Gallivan, J.P.2
  • 68
    • 0043009734 scopus 로고    scopus 로고
    • Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity
    • DOI 10.1038/nsb959
    • Khvorova, A., Lescoute, A., Westhof, E. & Jayasena, S.D. Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity. Nat. Struct. Biol. 10, 708-712 (2003 (Pubitemid 37052408)
    • (2003) Nature Structural Biology , vol.10 , Issue.9 , pp. 708-712
    • Khvorova, A.1    Lescoute, A.2    Westhof, E.3    Jayasena, S.D.4
  • 69
    • 41949098095 scopus 로고    scopus 로고
    • Improved aptazyme design and in vivo screening enable riboswitching in bacteria
    • Wieland, M. & Hartig, J.S. Improved aptazyme design and in vivo screening enable riboswitching in bacteria. Angew. Chem. Int. Edn Engl. 47, 2604-2607 (2008
    • (2008) Angew. Chem. Int. Edn Engl. , vol.47 , pp. 2604-2607
    • Wieland, M.1    Hartig, J.S.2
  • 70
    • 38849166047 scopus 로고    scopus 로고
    • An artificial aptazyme-based riboswitch and its cascading system in E. coli
    • DOI 10.1002/cbic.200700478
    • Ogawa, A. & Maeda, M. An artificial aptazyme-based riboswitch and its cascading system in E. coli. ChemBioChem 9, 206-209 (2008 (Pubitemid 351196787)
    • (2008) ChemBioChem , vol.9 , Issue.2 , pp. 206-209
    • Ogawa, A.1    Maeda, M.2
  • 71
    • 65249122814 scopus 로고    scopus 로고
    • Artificial ribozyme switches containing natural riboswitch aptamer domains
    • Wieland, M., Benz, A., Klauser, B. & Hartig, J.S. Artificial ribozyme switches containing natural riboswitch aptamer domains. Angew. Chem. Int. Edn Engl. 48, 2715-2718 (2009
    • (2009) Angew. Chem. Int. Edn Engl. , vol.48 , pp. 2715-2718
    • Wieland, M.1    Benz, A.2    Klauser, B.3    Hartig, J.S.4
  • 73
    • 54349091336 scopus 로고    scopus 로고
    • A novel label-free biosensor using an aptazyme-suppressor-tRNA conjugate and an amber mutated reporter gene
    • Ogawa, A. & Maeda, M. A novel label-free biosensor using an aptazyme-suppressor-tRNA conjugate and an amber mutated reporter gene. ChemBioChem 9, 2204-2208 (2008
    • (2008) ChemBioChem , vol.9 , pp. 2204-2208
    • Ogawa, A.1    Maeda, M.2
  • 75
    • 77649260489 scopus 로고    scopus 로고
    • Reengineering orthogonally selective riboswitches
    • Dixon, N. et al. Reengineering orthogonally selective riboswitches. Proc. Natl. Acad. Sci. USA 107, 2830-2835 (2010
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 2830-2835
    • Dixon, N.1
  • 76
    • 34249806305 scopus 로고    scopus 로고
    • Guiding bacteria with small molecules and RNA
    • DOI 10.1021/ja0692480
    • Topp, S. & Gallivan, J.P. Guiding bacteria with small molecules and RNA. J. Am. Chem. Soc. 129, 6807-6811 (2007 (Pubitemid 46847522)
    • (2007) Journal of the American Chemical Society , vol.129 , Issue.21 , pp. 6807-6811
    • Topp, S.1    Gallivan, J.P.2
  • 77
    • 77952507419 scopus 로고    scopus 로고
    • Reprogramming bacteria to seek and destroy an herbicide
    • Sinha, J., Reyes, S.J. & Gallivan, J.P. Reprogramming bacteria to seek and destroy an herbicide. Nat. Chem. Biol. 6, 464-470 (2010
    • (2010) Nat. Chem. Biol. , vol.6 , pp. 464-470
    • Sinha, J.1    Reyes, S.J.2    Gallivan, J.P.3
  • 78
    • 4344646564 scopus 로고    scopus 로고
    • Engineering a ligand-dependent RNA transcriptional activator
    • DOI 10.1016/j.chembiol.2004.05.017, PII S1074552104001863
    • Buskirk, A.R., Landrigan, A. & Liu, D.R. Engineering a ligand-dependent RNA transcriptional activator. Chem. Biol. 11, 1157-1163 (2004 (Pubitemid 39138768)
    • (2004) Chemistry and Biology , vol.11 , Issue.8 , pp. 1157-1163
    • Buskirk, A.R.1    Landrigan, A.2    Liu, D.R.3
  • 79
    • 77952330657 scopus 로고    scopus 로고
    • A ligand-dependent hammerhead ribozyme switch for controlling mammalian gene expression
    • Ausl'nder, S., Ketzer, P. & Hartig, J.S. A ligand-dependent hammerhead ribozyme switch for controlling mammalian gene expression. Mol. Biosyst. 6, 807-814 (2010
    • (2010) Mol. Biosyst. , vol.6 , pp. 807-814
    • Ausl'nder, S.1    Ketzer, P.2    Hartig, J.S.3
  • 80
    • 77952679687 scopus 로고    scopus 로고
    • Genetic control of mammalian T-cell proliferation with synthetic RNA regulatory systems
    • Chen, Y.Y., Jensen, M.C. & Smolke, C.D. Genetic control of mammalian T-cell proliferation with synthetic RNA regulatory systems. Proc. Natl. Acad. Sci. USA 107, 8531-8536 (2010
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 8531-8536
    • Chen, Y.Y.1    Jensen, M.C.2    Smolke, C.D.3
  • 81
    • 79951519285 scopus 로고    scopus 로고
    • Rational design of artificial riboswitches based on ligand-dependent modulation of internal ribosome entry in wheat germ extract and their applications as label-free biosensors
    • Ogawa, A. Rational design of artificial riboswitches based on ligand-dependent modulation of internal ribosome entry in wheat germ extract and their applications as label-free biosensors. RNA 17, 478-488 (2011
    • (2011) RNA , vol.17 , pp. 478-488
    • Ogawa, A.1
  • 82
    • 10044274340 scopus 로고    scopus 로고
    • Influence of RNA secondary structure on the pre-mRNA splicing process
    • DOI 10.1128/MCB.24.24.10505-10514.2004
    • Buratti, E. & Baralle, F.E. Influence of RNA secondary structure on the pre-mRNA splicing process. Mol. Cell. Biol. 24, 10505-10514 (2004 (Pubitemid 39603113)
    • (2004) Molecular and Cellular Biology , vol.24 , Issue.24 , pp. 10505-10514
    • Buratti, E.1    Baralle, F.E.2
  • 83
    • 27144526390 scopus 로고    scopus 로고
    • An artificial riboswitch for controlling pre-mRNA splicing
    • DOI 10.1261/rna.2162205
    • Kim, D.S., Gusti, V., Pillai, S.G. & Gaur, R.K. An artificial riboswitch for controlling pre-mRNA splicing. RNA 11, 1667-1677 (2005 (Pubitemid 41505541)
    • (2005) RNA , vol.11 , Issue.11 , pp. 1667-1677
    • Kim, D.-S.1    Gusti, V.2    Pillai, S.G.3    Gaur, R.K.4
  • 84
    • 41349083970 scopus 로고    scopus 로고
    • Ligand-induced sequestering of branchpoint sequence allows conditional control of splicing
    • Kim, D.S., Gusti, V., Dery, K.J. & Gaur, R.K. Ligand-induced sequestering of branchpoint sequence allows conditional control of splicing. BMC Mol. Biol. 9, 23 (2008
    • (2008) BMC Mol. Biol. , vol.9 , pp. 23
    • Kim, D.S.1    Gusti, V.2    Dery, K.J.3    Gaur, R.K.4
  • 85
    • 34547639506 scopus 로고    scopus 로고
    • Tetracycline aptamer-controlled regulation of pre-mRNA splicing in yeast
    • DOI 10.1093/nar/gkm425
    • Weigand, J.E. & Suess, B. Tetracycline aptamer-controlled regulation of pre-mRNA splicing in yeast. Nucleic Acids Res. 35, 4179-4185 (2007 (Pubitemid 47244637)
    • (2007) Nucleic Acids Research , vol.35 , Issue.12 , pp. 4179-4185
    • Weigand, J.E.1    Suess, B.2
  • 86
    • 78649429678 scopus 로고    scopus 로고
    • Reprogramming cellular behavior with RNA controllers responsive to endogenous proteins
    • Culler, S.J., Hoff, K.G. & Smolke, C.D. Reprogramming cellular behavior with RNA controllers responsive to endogenous proteins. Science 330, 1251-1255 (2010
    • (2010) Science , vol.330 , pp. 1251-1255
    • Culler, S.J.1    Hoff, K.G.2    Smolke, C.D.3
  • 87
    • 70350666262 scopus 로고    scopus 로고
    • A fast and efficient translational control system for conditional expression of yeast genes
    • Kötter, P., Weigand, J.E., Meyer, B., Entian, K.D. & Suess, B. A fast and efficient translational control system for conditional expression of yeast genes. Nucleic Acids Res. 37, e120 (2009
    • (2009) Nucleic Acids Res. , vol.37
    • Kötter, P.1    Weigand, J.E.2    Meyer, B.3    Entian, K.D.4    Suess, B.5
  • 88
    • 70349631634 scopus 로고    scopus 로고
    • Conditional RNA interference mediated by allosteric ribozyme
    • Kumar, D., An, C.I. & Yokobayashi, Y. Conditional RNA interference mediated by allosteric ribozyme. J. Am. Chem. Soc. 131, 13906-13907 (2009
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 13906-13907
    • Kumar, D.1    An, C.I.2    Yokobayashi, Y.3
  • 89
    • 33646183047 scopus 로고    scopus 로고
    • Artificial control of gene expression in mammalian cells by modulating RNA interference through aptamer-small molecule interaction
    • An, C.I., Trinh, V.B. & Yokobayashi, Y. Artificial control of gene expression in mammalian cells by modulating RNA interference through aptamer-small molecule interaction. RNA 12, 710-716 (2006
    • (2006) RNA , vol.12 , pp. 710-716
    • An, C.I.1    Trinh, V.B.2    Yokobayashi, Y.3
  • 90
    • 54949106632 scopus 로고    scopus 로고
    • Model-guided design of ligand-regulated RNAi for programmable control of gene expression
    • Beisel, C.L., Bayer, T.S., Hoff, K.G. & Smolke, C.D. Model-guided design of ligand-regulated RNAi for programmable control of gene expression. Mol. Syst. Biol. 4, 224 (2008
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 224
    • Beisel, C.L.1    Bayer, T.S.2    Hoff, K.G.3    Smolke, C.D.4
  • 91
    • 0037388001 scopus 로고    scopus 로고
    • Conditional gene expression by controlling translation with tetracycline-binding aptamers
    • DOI 10.1093/nar/gkg285
    • Suess, B. et al. Conditional gene expression by controlling translation with tetracycline-binding aptamers. Nucleic Acids Res. 31, 1853-1858 (2003 (Pubitemid 36432692)
    • (2003) Nucleic Acids Research , vol.31 , Issue.7 , pp. 1853-1858
    • Suess, B.1    Hanson, S.2    Berens, C.3    Fink, B.4    Schroeder, R.5    Hillen, W.6
  • 92
    • 0032755647 scopus 로고    scopus 로고
    • Allosteric selection of ribozymes that respond to the second messengers cGMP and cAMP
    • DOI 10.1038/14947
    • Koizumi, M., Soukup, G.A., Kerr, J.N. & Breaker, R.R. Allosteric selection of ribozymes that respond to the second messengers cGMP and cAMP. Nat. Struct. Biol. 6, 1062-1071 (1999 (Pubitemid 29519602)
    • (1999) Nature Structural Biology , vol.6 , Issue.11 , pp. 1062-1071
    • Koizumi, M.1    Soukup, G.A.2    Kerr, J.N.Q.3    Breaker, R.R.4
  • 93
    • 0035812605 scopus 로고    scopus 로고
    • In vitro selection of allosteric ribozymes: Theory and experimental validation
    • DOI 10.1006/jmbi.2001.4981
    • Piganeau, N., Thuillier, V. & Famulok, M. In vitro selection of allosteric ribozymes: theory and experimental validation. J. Mol. Biol. 312, 1177-1190 (2001 (Pubitemid 32980333)
    • (2001) Journal of Molecular Biology , vol.312 , Issue.5 , pp. 1177-1190
    • Piganeau, N.1    Thuillier, V.2    Famulok, M.3
  • 94
    • 70350523604 scopus 로고    scopus 로고
    • Mechanism-guided library design and dual genetic selection of synthetic off riboswitches
    • Muranaka, N., Abe, K. & Yokobayashi, Y. Mechanism-guided library design and dual genetic selection of synthetic OFF riboswitches. ChemBioChem 10, 2375-2381 (2009
    • (2009) ChemBioChem , vol.10 , pp. 2375-2381
    • Muranaka, N.1    Abe, K.2    Yokobayashi, Y.3
  • 95
    • 38849129508 scopus 로고    scopus 로고
    • Random walks to synthetic riboswitches-a high-throughput selection based on cell motility
    • Topp, S. & Gallivan, J.P. Random walks to synthetic riboswitches-a high-throughput selection based on cell motility. ChemBioChem 9, 210-213 (2008
    • (2008) ChemBioChem , vol.9 , pp. 210-213
    • Topp, S.1    Gallivan, J.P.2
  • 96
    • 58549088724 scopus 로고    scopus 로고
    • A flow cytometry-based screen for synthetic riboswitches
    • Lynch, S.A. & Gallivan, J.P. A flow cytometry-based screen for synthetic riboswitches. Nucleic Acids Res. 37, 184-192 (2009
    • (2009) Nucleic Acids Res. , vol.37 , pp. 184-192
    • Lynch, S.A.1    Gallivan, J.P.2
  • 97
    • 54349119816 scopus 로고    scopus 로고
    • FACS-based approach to engineering artificial riboswitches
    • Fowler, C.C., Brown, E.D. & Li, Y.A. FACS-based approach to engineering artificial riboswitches. ChemBioChem 9, 1906-1911 (2008
    • (2008) ChemBioChem , vol.9 , pp. 1906-1911
    • Fowler, C.C.1    Brown, E.D.2    Li, Y.A.3
  • 98
    • 38049004429 scopus 로고    scopus 로고
    • Screening for engineered neomycin riboswitches that control translation initiation
    • Weigand, J.E. et al. Screening for engineered neomycin riboswitches that control translation initiation. RNA 14, 89-97 (2008
    • (2008) RNA , vol.14 , pp. 89-97
    • Weigand, J.E.1
  • 100
    • 70350107527 scopus 로고    scopus 로고
    • Direct selection for ribozyme cleavage activity in cells
    • Chen, X., Denison, L., Levy, M. & Ellington, A.D. Direct selection for ribozyme cleavage activity in cells. RNA 15, 2035-2045 (2009
    • (2009) RNA , vol.15 , pp. 2035-2045
    • Chen, X.1    Denison, L.2    Levy, M.3    Ellington, A.D.4
  • 101
    • 0036669759 scopus 로고    scopus 로고
    • Controlling protein activity with ligand-regulated RNA aptamers
    • DOI 10.1016/S1074-5521(02)00185-0, PII S1074552102001850
    • Vuyisich, M. & Beal, P.A. Controlling protein activity with ligand-regulated RNA aptamers. Chem. Biol. 9, 907-913 (2002). (Pubitemid 35240910)
    • (2002) Chemistry and Biology , vol.9 , Issue.8 , pp. 907-913
    • Vuyisich, M.1    Beal, P.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.