-
1
-
-
0025695458
-
Sequence requirements of the hammerhead RNA self-cleavage reaction
-
Ruffner, D.E., Stormo, G.D. & Uhlenbeck, O.C. Sequence requirements of the hammerhead RNA self-cleavage reaction. Biochemistry 29, 10695-10702 (1990).
-
(1990)
Biochemistry
, vol.29
, pp. 10695-10702
-
-
Ruffner, D.E.1
Stormo, G.D.2
Uhlenbeck, O.C.3
-
2
-
-
0003422388
-
-
W.H. Freeman, New York
-
Darnell, J., Lodish, H.F. & Baltimore, D. Molecular Cell Biology (W.H. Freeman, New York, 1986).
-
(1986)
Molecular Cell Biology
-
-
Darnell, J.1
Lodish, H.F.2
Baltimore, D.3
-
3
-
-
0028957528
-
Ribozymes expressed within the loop of a natural antisense RNA form functional transcription terminators
-
Deshler, J.O., Li, H., Rossi, J.J. & Castanotto, D. Ribozymes expressed within the loop of a natural antisense RNA form functional transcription terminators. Gene 155, 35-43 (1995).
-
(1995)
Gene
, vol.155
, pp. 35-43
-
-
Deshler, J.O.1
Li, H.2
Rossi, J.J.3
Castanotto, D.4
-
4
-
-
0023055382
-
Nucleotide sequence and newly formed phosphodiester bond of spontaneously ligated satellite tobacco ringspot virus RNA
-
Buzayan, J.M., Hampel, A. & Bruening, G. Nucleotide sequence and newly formed phosphodiester bond of spontaneously ligated satellite tobacco ringspot virus RNA. Nucleic Acids Res. 14, 9729-9743 (1986).
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 9729-9743
-
-
Buzayan, J.M.1
Hampel, A.2
Bruening, G.3
-
5
-
-
0023643095
-
Self-cleavage of virusoid RNA is performed by the proposed 55-nucleotide active site
-
Forster, A.C. & Symons, R.H. Self-cleavage of virusoid RNA is performed by the proposed 55-nucleotide active site. Cell 50, 9-16 (1987).
-
(1987)
Cell
, vol.50
, pp. 9-16
-
-
Forster, A.C.1
Symons, R.H.2
-
6
-
-
0026538051
-
Plus and minus RNAs of peach latent mosaic viroid self-cleave in vitro via hammerhead structures
-
Hernandez, C. & Flores, R. Plus and minus RNAs of peach latent mosaic viroid self-cleave in vitro via hammerhead structures, Proc. Natl. Acad. Sci. USA 89, 3711-3715 (1992).
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 3711-3715
-
-
Hernandez, C.1
Flores, R.2
-
7
-
-
0028339955
-
Kinetic characterization of intramolecular and inter-molecular hammerhead RNAs with stem II deletions
-
Long, D. M. & Uhlenbeck, O.C. Kinetic characterization of intramolecular and inter-molecular hammerhead RNAs with stem II deletions. Proc. Natl. Acad. Sci. USA 91, 6977-6981 (1994).
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 6977-6981
-
-
Long, D.M.1
Uhlenbeck, O.C.2
-
8
-
-
0028842731
-
Divalent metal ions and the internal equilibrium of the hammerhead ribozyme
-
Long, D.M., LaRiviere, F.J. & Uhlenbeck, O.C. Divalent metal ions and the internal equilibrium of the hammerhead ribozyme. Biochemistry 34, 14435-14440 (1995).
-
(1995)
Biochemistry
, vol.34
, pp. 14435-14440
-
-
Long, D.M.1
LaRiviere, F.J.2
Uhlenbeck, O.C.3
-
9
-
-
0028063567
-
Three-dimensional structure of a hammerhead ribozyme
-
Pley, H.W., Flaherty, K.M. & McKay, D.B. Three-dimensional structure of a hammerhead ribozyme. Nature 372, 68-74 (1994).
-
(1994)
Nature
, vol.372
, pp. 68-74
-
-
Pley, H.W.1
Flaherty, K.M.2
McKay, D.B.3
-
10
-
-
0029073091
-
The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage
-
Scott, W.G., Finch, J.T. & Klug, A. The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage. Cell 81, 991-1002 (1995).
-
(1995)
Cell
, vol.81
, pp. 991-1002
-
-
Scott, W.G.1
Finch, J.T.2
Klug, A.3
-
11
-
-
0037071839
-
Structure of the SRP19 RNA complex and implications for signal recognition particle assembly
-
Hainzl, T., Huang, S. & Sauer-Eriksson, A.E. Structure of the SRP19 RNA complex and implications for signal recognition particle assembly, Nature 417, 767-771 (2002).
-
(2002)
Nature
, vol.417
, pp. 767-771
-
-
Hainzl, T.1
Huang, S.2
Sauer-Eriksson, A.E.3
-
12
-
-
0036289536
-
Crystal structure of SRP19 in complex with the S domain of SRP RNA and its implication for the assembly of the signal recognition particle
-
Oubridge, C., Kuglstatter, A., Jovine, L. & Nagai, K. Crystal structure of SRP19 in complex with the S domain of SRP RNA and its implication for the assembly of the signal recognition particle. Mol. Cell 9, 1251-1261 (2002).
-
(2002)
Mol. Cell
, vol.9
, pp. 1251-1261
-
-
Oubridge, C.1
Kuglstatter, A.2
Jovine, L.3
Nagai, K.4
-
13
-
-
0026742978
-
The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids
-
Berman, H.M. et al. The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids. Biophys. J. 63, 751-759 (1992).
-
(1992)
Biophys. J.
, vol.63
, pp. 751-759
-
-
Berman, H.M.1
-
14
-
-
0032232529
-
MANIP an interactive tool for modelling RNA
-
Massire, C. & Westhof, E. MANIP: an interactive tool for modelling RNA. J. Mol. Graph. Mod. 16, 197-205 (1999).
-
(1999)
J. Mol. Graph. Mod.
, vol.16
, pp. 197-205
-
-
Massire, C.1
Westhof, E.2
-
15
-
-
0029949701
-
Structure and function of the hammerhead ribozyme: An unfinished story
-
McKay, D.B. Structure and function of the hammerhead ribozyme: an unfinished story, RNA 2, 395-403 (1996).
-
(1996)
RNA
, vol.2
, pp. 395-403
-
-
McKay, D.B.1
-
16
-
-
0035826822
-
Dissection of the ion-induced folding of the hammerhead ribozyme using 19F NMR
-
Hammann, C., Norman, D.G. & Lilley, D.M. Dissection of the ion-induced folding of the hammerhead ribozyme using 19F NMR. Proc. Natl. Acad. Sci. USA 98, 5503-5508 (2001).
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 5503-5508
-
-
Hammann, C.1
Norman, D.G.2
Lilley, D.M.3
-
17
-
-
0030920270
-
Kinetic mechanism of the hairpin ribozyme. Identification and characterization of two nonexchangeable conformations
-
Esteban, J.A., Banerjee, A.R. & Burke, J.M. Kinetic mechanism of the hairpin ribozyme. Identification and characterization of two nonexchangeable conformations. J. Biol. Chem. 272, 13629-13639 (1997).
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 13629-13639
-
-
Esteban, J.A.1
Banerjee, A.R.2
Burke, J.M.3
-
18
-
-
0034545071
-
The folding of the hairpin ribozyme: Dependence on the loops and the junction
-
Zhao, Z.-Y. et al. The folding of the hairpin ribozyme: dependence on the loops and the junction. RNA 6, 1833-1846 (2000).
-
(2000)
RNA
, vol.6
, pp. 1833-1846
-
-
Zhao, Z.-Y.1
-
19
-
-
0032979707
-
Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction
-
Walter, N.G., Burke, J.M. & Millar, D.P. Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction. Nat. Struct. Biol. 6, 544-549 (1999).
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 544-549
-
-
Walter, N.G.1
Burke, J.M.2
Millar, D.P.3
-
20
-
-
0034814785
-
A covalent crosslink converts the hammerhead ribozyme from a ribonuclease to an RNA ligase
-
Stage-Zimmermann, T.K. & Uhlenbeck, O.C. A covalent crosslink converts the hammerhead ribozyme from a ribonuclease to an RNA ligase. Nat. Struct. Biol. 8, 863-867 (2001).
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 863-867
-
-
Stage-Zimmermann, T.K.1
Uhlenbeck, O.C.2
-
21
-
-
0037188361
-
Internal equilibrium of the hammerhead ribozyme is altered by the length of certain covalent cross-links
-
Blount, K.F. & Uhlenbeck, O.C. Internal equilibrium of the hammerhead ribozyme is altered by the length of certain covalent cross-links. Biochemistry 41, 6834-6841 (2002).
-
(2002)
Biochemistry
, vol.41
, pp. 6834-6841
-
-
Blount, K.F.1
Uhlenbeck, O.C.2
-
22
-
-
0033600553
-
Tertiary structure stabilization promotes hairpin ribozyme ligation
-
Fedor, M.J. Tertiary structure stabilization promotes hairpin ribozyme ligation. Biochemistry 38, 11040-11050 (1999).
-
(1999)
Biochemistry
, vol.38
, pp. 11040-11050
-
-
Fedor, M.J.1
-
23
-
-
0033065083
-
Magnesium-dependent folding of self-splicing RNA: Exploring the link between cooperativity, thermodynamics, and kinetics
-
Pan, J., Thirumalai, D. & Woodson, S.A. Magnesium-dependent folding of self-splicing RNA: exploring the link between cooperativity, thermodynamics, and kinetics. Proc. Natl. Acad. Sci. USA 96, 6149-6154 (1999).
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 6149-6154
-
-
Pan, J.1
Thirumalai, D.2
Woodson, S.A.3
-
24
-
-
0033544723
-
The effect of long-range loop-loop interactions on folding of the Tetrahymena self-splicing RNA
-
Pan, J. & Woodson, S.A. The effect of long-range loop-loop interactions on folding of the Tetrahymena self-splicing RNA. J. Mol. Biol. 294, 955-965 (1999).
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 955-965
-
-
Pan, J.1
Woodson, S.A.2
-
25
-
-
0030452773
-
New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: A complete 3D model of the Tetrahymena thermophila ribozyme
-
Lehnert, V., Jaeger, L., Michel, F. & Westhof, E. New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme. Chem. Biol. 3, 993-1009 (1996).
-
(1996)
Chem. Biol.
, vol.3
, pp. 993-1009
-
-
Lehnert, V.1
Jaeger, L.2
Michel, F.3
Westhof, E.4
-
26
-
-
0030815923
-
A branched DNA signal amplification assay for quantification of nucleic acid targets below 100 molecules/ml
-
Collins, M.L. et al. A branched DNA signal amplification assay for quantification of nucleic acid targets below 100 molecules/ml. Nucleic Acids Res. 25, 2979-2984 (1997).
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 2979-2984
-
-
Collins, M.L.1
-
27
-
-
0024819449
-
Synthesis of small RNAs using T7 RNA polymerase
-
Milligan, J.F. & Uhlenbeck, O.C. Synthesis of small RNAs using T7 RNA polymerase. Methods Enzymol. 180, 51-62 (1989).
-
(1989)
Methods Enzymol.
, vol.180
, pp. 51-62
-
-
Milligan, J.F.1
Uhlenbeck, O.C.2
-
29
-
-
0028500393
-
DRAWNA: A program for drawing schematic views of nucleic acids
-
Massire, C., Gaspin, C. & Westhof, E. DRAWNA: a program for drawing schematic views of nucleic acids. J. Mol. Graph. 12, 201-206 (1994).
-
(1994)
J. Mol. Graph.
, vol.12
, pp. 201-206
-
-
Massire, C.1
Gaspin, C.2
Westhof, E.3
-
30
-
-
0026771509
-
Numbering system for the hammerhead
-
Hertel, K.J. et al. Numbering system for the hammerhead. Nucleic Acids Res. 20, 12 (1992).
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 12
-
-
Hertel, K.J.1
-
31
-
-
0035162595
-
SRPDB (Signal Recognition Particle Database)
-
Gorodkin, J., Knudsen, B., Zwieb, C. & Samuelsson, T. SRPDB (Signal Recognition Particle Database). Nucleic Acids Res. 29, 169-170 (2001).
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 169-170
-
-
Gorodkin, J.1
Knudsen, B.2
Zwieb, C.3
Samuelsson, T.4
-
32
-
-
0035010211
-
Geometric nomenclature and classification of RNA base pairs
-
Leontis, N.B. & Westhof, E. Geometric nomenclature and classification of RNA base pairs. RNA 7, 499-512 (2001).
-
(2001)
RNA
, vol.7
, pp. 499-512
-
-
Leontis, N.B.1
Westhof, E.2
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