메뉴 건너뛰기




Volumn 7, Issue 2, 2005, Pages 137-143

Allosteric aptamers and aptazymes as probes for screening approaches

Author keywords

Allosteric ribozymes; Aptamers; High throughput screening; Synthetic riboswitches

Indexed keywords

ADENOSINE TRIPHOSPHATE; APTAMER; BETA GALACTOSIDASE; FLAVINE MONONUCLEOTIDE; GREEN FLUORESCENT PROTEIN; LUCIFERASE; NUCLEIC ACID; ORGANIC COMPOUND; REV PROTEIN; RIBOZYME; SELF SPLICING RIBOSOMAL RNA;

EID: 17144380787     PISSN: 14648431     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review
Times cited : (54)

References (58)
  • 1
    • 0033485863 scopus 로고    scopus 로고
    • Nucleic acid molecular switches
    • Soukup GA, Breaker RR: Nucleic acid molecular switches. Trends Biotechnol (1999) 17(12):469-476.
    • (1999) Trends Biotechnol. , vol.17 , Issue.12 , pp. 469-476
    • Soukup, G.A.1    Breaker, R.R.2
  • 2
    • 0031171217 scopus 로고    scopus 로고
    • Rational design of allosteric ribozymes
    • Tang J, Breaker RR: Rational design of allosteric ribozymes. Chem Biol (1997) 4(6):453-459.
    • (1997) Chem. Biol. , vol.4 , Issue.6 , pp. 453-459
    • Tang, J.1    Breaker, R.R.2
  • 3
    • 0032530868 scopus 로고    scopus 로고
    • Mechanism for allosteric inhibition of an ATP-sensitive ribozyme
    • Tang J, Breaker RR: Mechanism for allosteric inhibition of an ATP-sensitive ribozyme. Nucleic Acids Res (1998) 26 18):4214-4221.
    • (1998) Nucleic Acids Res. , vol.26 , Issue.18 , pp. 4214-4221
    • Tang, J.1    Breaker, R.R.2
  • 4
    • 0033616774 scopus 로고    scopus 로고
    • Engineering precision RNA molecular switches
    • Soukup GA, Breaker RR: Engineering precision RNA molecular switches. Proc Natl Acad Sci USA (1999) 96(7):3584-3589.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , Issue.7 , pp. 3584-3589
    • Soukup, G.A.1    Breaker, R.R.2
  • 5
    • 0036849338 scopus 로고    scopus 로고
    • A versatile communication module for controlling RNA folding and catalysis
    • Kertsburg A, Soukup GA: A versatile communication module for controlling RNA folding and catalysis. Nucleic Acids Res (2002) 30(21):4599-4606.
    • (2002) Nucleic Acids Res. , vol.30 , Issue.21 , pp. 4599-4606
    • Kertsburg, A.1    Soukup, G.A.2
  • 6
    • 0027995790 scopus 로고
    • Isolation of RNA aptamers for biological cofactors by in vitro selection
    • Burgstaller P, Famulok M: Isolation of RNA aptamers for biological cofactors by in vitro selection. Angew Chem Int Ed (1994) 33(10):1084-1087.
    • (1994) Angew Chem. Int. Ed. , vol.33 , Issue.10 , pp. 1084-1087
    • Burgstaller, P.1    Famulok, M.2
  • 7
    • 0028224199 scopus 로고
    • High-resolution molecular discrimination by RNA
    • Jenison RD, Gill SC, Pardi A, Polisky B: High-resolution molecular discrimination by RNA. Science (1994) 263 5152):1425-1429.
    • (1994) Science , vol.263 , Issue.5152 , pp. 1425-1429
    • Jenison, R.D.1    Gill, S.C.2    Pardi, A.3    Polisky, B.4
  • 8
    • 0027180473 scopus 로고
    • An RNA motif that binds ATP
    • Sassanfar M, Szostak JW: An RNA motif that binds ATP. Nature (1993) 364(6437):550-553.
    • (1993) Nature , vol.364 , Issue.6437 , pp. 550-553
    • Sassanfar, M.1    Szostak, J.W.2
  • 9
    • 0032755647 scopus 로고    scopus 로고
    • Allosteric selection of ribozymes that respond to the second messengers cGMP and cAMP
    • Koizumi M, Soukup GA, Kerr JN, Breaker RR: Allosteric selection of ribozymes that respond to the second messengers cGMP and cAMP. Nat Struct Biol (1999) 6(11):1062-1071.
    • (1999) Nat. Struct. Biol. , vol.6 , Issue.11 , pp. 1062-1071
    • Koizumi, M.1    Soukup, G.A.2    Kerr, J.N.3    Breaker, R.R.4
  • 11
    • 0035812605 scopus 로고    scopus 로고
    • In vitro selection of allosteric ribozymes: Theory and experimental validation
    • Piganeau N, Thuillier V, Famulok M: In vitro selection of allosteric ribozymes: Theory and experimental validation. J Mol Biol (2001) 312(5):1177-1190.
    • (2001) J. Mol. Biol. , vol.312 , Issue.5 , pp. 1177-1190
    • Piganeau, N.1    Thuillier, V.2    Famulok, M.3
  • 12
    • 0032955410 scopus 로고    scopus 로고
    • In vitro selection of an allosteric ribozyme that transduces analytes to amplicons
    • Robertson MP, Ellington AD: In vitro selection of an allosteric ribozyme that transduces analytes to amplicons. Nat Biotechnol (1999) 17(1):62-66.
    • (1999) Nat. Biotechnol. , vol.17 , Issue.1 , pp. 62-66
    • Robertson, M.P.1    Ellington, A.D.2
  • 13
    • 0034655587 scopus 로고    scopus 로고
    • Design and optimization of effector-activated ribozyme ligases
    • Robertson MP, Ellington AD: Design and optimization of effector-activated ribozyme ligases. Nucleic Acids Res (2000) 28(8):1751-1759.
    • (2000) Nucleic Acids Res. , vol.28 , Issue.8 , pp. 1751-1759
    • Robertson, M.P.1    Ellington, A.D.2
  • 15
    • 0030498356 scopus 로고    scopus 로고
    • 2+ ion as a cofactor for a novel RNA-cleaving deoxyribozyme
    • 2+ ion as a cofactor for a novel RNA-cleaving deoxyribozyme. Angew Chem Int Ed (1996) 35(23-24):2837-2841.
    • (1996) Angew Chem. Int. Ed. , vol.35 , Issue.23-24 , pp. 2837-2841
    • Faulhammer, D.1    Famulok, M.2
  • 16
    • 0031556016 scopus 로고    scopus 로고
    • Characterization and divalent metal-ion dependence of in vitro selected deoxyribozymes which cleave DNA/RNA chimeric oligonucleotides
    • Faulhammer D, Famulok M: Characterization and divalent metal-ion dependence of in vitro selected deoxyribozymes which cleave DNA/RNA chimeric oligonucleotides. J Mol Biol (1997) 269(2):188-202.
    • (1997) J. Mol. Biol. , vol.269 , Issue.2 , pp. 188-202
    • Faulhammer, D.1    Famulok, M.2
  • 17
    • 0030898510 scopus 로고    scopus 로고
    • A general purpose RNA-cleaving DNA enzyme
    • Santoro SW, Joyce GF: A general purpose RNA-cleaving DNA enzyme. Proc Natl Acad Sci USA (1997) 94(9):4262-4266.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , Issue.9 , pp. 4262-4266
    • Santoro, S.W.1    Joyce, G.F.2
  • 18
    • 0034697291 scopus 로고    scopus 로고
    • 2+ ions. Evidence for the identity of 8-17 with the catalytic domain of the Mg5 deoxyribozyme
    • 2+ ions. Evidence for the identity of 8-17 with the catalytic domain of the Mg5 deoxyribozyme. J Biol Chem (2000) 276(16):11693-11697.
    • (2000) J. Biol. Chem. , vol.276 , Issue.16 , pp. 11693-11697
    • Peracchi, A.1
  • 19
    • 0036301260 scopus 로고    scopus 로고
    • A general strategy for effector-mediated control of RNA-cleaving ribozymes and DNA enzymes
    • Wang DY, Lai BH, Sen D: A general strategy for effector-mediated control of RNA-cleaving ribozymes and DNA enzymes. J Mol Biol (2002) 318(1):33-43.
    • (2002) J. Mol. Biol. , vol.318 , Issue.1 , pp. 33-43
    • Wang, D.Y.1    Lai, B.H.2    Sen, D.3
  • 20
    • 1542408632 scopus 로고    scopus 로고
    • Adenosine-dependent assembly of aptazyme-functionalized gold nanoparticles and its application as a colorimetric biosensor
    • Liu J, Lu Y: Adenosine-dependent assembly of aptazyme-functionalized gold nanoparticles and its application as a colorimetric biosensor. Anal Chem (2004) 76(6):1627-1632.
    • (2004) Anal. Chem. , vol.76 , Issue.6 , pp. 1627-1632
    • Liu, J.1    Lu, Y.2
  • 21
    • 0038209225 scopus 로고    scopus 로고
    • A colorimetric lead biosensor using DNAzyme-directed assembly of gold nanoparticles
    • Liu J, Lu Y: A colorimetric lead biosensor using DNAzyme-directed assembly of gold nanoparticles. J Am Chem Soc (2003) 125(22):6642-6643.
    • (2003) J. Am. Chem. Soc. , vol.125 , Issue.22 , pp. 6642-6643
    • Liu, J.1    Lu, Y.2
  • 23
    • 0344430112 scopus 로고    scopus 로고
    • Aptamers switch on fluorescence of triphenylmethane dyes
    • Babendure JR, Adams SR, Tsien RY: Aptamers switch on fluorescence of triphenylmethane dyes. J Am Chem Soc (2003) 125(48):14716-14717.
    • (2003) J. Am. Chem. Soc. , vol.125 , Issue.48 , pp. 14716-14717
    • Babendure, J.R.1    Adams, S.R.2    Tsien, R.Y.3
  • 24
    • 0037416446 scopus 로고    scopus 로고
    • External regulation of hairpin ribozyme activity by an oligonucleotide effector
    • Vauleon S, Muller S: External regulation of hairpin ribozyme activity by an oligonucleotide effector. Chembiochem (2003) 4(2-3):220-224.
    • (2003) Chembiochem. , vol.4 , Issue.2-3 , pp. 220-224
    • Vauleon, S.1    Muller, S.2
  • 27
    • 1642535356 scopus 로고    scopus 로고
    • Sequence-specific detection of microRNAs by signal-amplifying ribozymes
    • Hartig JS, Grune I, Najafi-Shoushtari SH, Famulok M: Sequence-specific detection of microRNAs by signal-amplifying ribozymes. J Am Chem Soc (2004) 126(3):722-723.
    • (2004) J. Am. Chem. Soc. , vol.126 , Issue.3 , pp. 722-723
    • Hartig, J.S.1    Grune, I.2    Najafi-Shoushtari, S.H.3    Famulok, M.4
  • 29
    • 0037440736 scopus 로고    scopus 로고
    • Hybridization kinetics and thermodynamics of molecular beacons
    • Tsourkas A, Behlke MA, Rose SD, Bao G: Hybridization kinetics and thermodynamics of molecular beacons. Nucleic Acids Res (2003) 31(4):1319-1330.
    • (2003) Nucleic Acids Res. , vol.31 , Issue.4 , pp. 1319-1330
    • Tsourkas, A.1    Behlke, M.A.2    Rose, S.D.3    Bao, G.4
  • 30
    • 0034936573 scopus 로고    scopus 로고
    • In vitro selection of nucleoprotein enzymes
    • Robertson MP, Ellington AD: In vitro selection of nucleoprotein enzymes. Nat Biotechnol (2001) 19 7):650-655.
    • (2001) Nat. Biotechnol. , vol.19 , Issue.7 , pp. 650-655
    • Robertson, M.P.1    Ellington, A.D.2
  • 31
    • 0346992203 scopus 로고    scopus 로고
    • In vitro selection of ribozymes dependent on peptides for activity
    • Robertson MP, Knudsen SM, Ellington AD: In vitro selection of ribozymes dependent on peptides for activity. RNA (2004) 10(1):114-127.
    • (2004) RNA , vol.10 , Issue.1 , pp. 114-127
    • Robertson, M.P.1    Knudsen, S.M.2    Ellington, A.D.3
  • 32
    • 0037440082 scopus 로고    scopus 로고
    • Selections for constituting new RNA-protein interactions in catalytic RNP
    • Atsumi S, Ikawa Y, Shiraishi H, Inoue T: Selections for constituting new RNA-protein interactions in catalytic RNP. Nucleic Acids Res (2003) 31(2):661-669.
    • (2003) Nucleic Acids Res. , vol.31 , Issue.2 , pp. 661-669
    • Atsumi, S.1    Ikawa, Y.2    Shiraishi, H.3    Inoue, T.4
  • 33
    • 0035476680 scopus 로고    scopus 로고
    • Design and development of a catalytic ribonucleoprotein
    • Atsumi S, Ikawa Y, Shiraishi H, Inoue T: Design and development of a catalytic ribonucleoprotein. EMBO J (2001) 20(19):5453-5460.
    • (2001) EMBO J. , vol.20 , Issue.19 , pp. 5453-5460
    • Atsumi, S.1    Ikawa, Y.2    Shiraishi, H.3    Inoue, T.4
  • 36
    • 0037112593 scopus 로고    scopus 로고
    • Reporter ribozymes for real-time analysis of domain-specific interactions in biomolecules: HIV-1 reverse transcriptase and the primer-template complex
    • Hartig JS, Famulok M: Reporter ribozymes for real-time analysis of domain-specific interactions in biomolecules: HIV-1 reverse transcriptase and the primer-template complex. Angew Chem Int Ed Engl (2002) 41(22):4263-4266.
    • (2002) Angew Chem. Int. Ed. Engl. , vol.41 , Issue.22 , pp. 4263-4266
    • Hartig, J.S.1    Famulok, M.2
  • 37
    • 0033519289 scopus 로고    scopus 로고
    • Real-time characterization of ribozymes by fluorecence resonance energy transfer (FRET)
    • Jenne A, Gmelin W, Raffler N, Famulok M: Real-time characterization of ribozymes by fluorecence resonance energy transfer (FRET). Angew Chem Int Ed (1999) 38(9):1300-1303.
    • (1999) Angew Chem. Int. Ed. , vol.38 , Issue.9 , pp. 1300-1303
    • Jenne, A.1    Gmelin, W.2    Raffler, N.3    Famulok, M.4
  • 39
    • 0026575221 scopus 로고
    • Selection of single-stranded DNA molecules that bind and inhibit human thrombin
    • Bock LC, Griffin LC, Latham JA, Vermaas EH, Toole JJ: Selection of single-stranded DNA molecules that bind and inhibit human thrombin. Nature (1992) 355(6360):564-566.
    • (1992) Nature , vol.355 , Issue.6360 , pp. 564-566
    • Bock, L.C.1    Griffin, L.C.2    Latham, J.A.3    Vermaas, E.H.4    Toole, J.J.5
  • 40
    • 2942670347 scopus 로고    scopus 로고
    • Sensing complex regulatory networks by conformationally controlled hairpin ribozymes
    • Najafi-Shoushtari SH, Mayer G, Famulok M: Sensing complex regulatory networks by conformationally controlled hairpin ribozymes. Nucleic Acids Res (2004) 32(10):3212-3219.
    • (2004) Nucleic Acids Res. , vol.32 , Issue.10 , pp. 3212-3219
    • Najafi-Shoushtari, S.H.1    Mayer, G.2    Famulok, M.3
  • 41
    • 4544303933 scopus 로고    scopus 로고
    • Signaling aptamers for monitoring enzymatic activity and for inhibitor screening
    • Nutiu R, Yu JM, Li Y: Signaling aptamers for monitoring enzymatic activity and for inhibitor screening. Chembiochem (2004) 5(8):1139-1144.
    • (2004) Chembiochem. , vol.5 , Issue.8 , pp. 1139-1144
    • Nutiu, R.1    Yu, J.M.2    Li, Y.3
  • 42
    • 0037462083 scopus 로고    scopus 로고
    • Structure-switching signaling aptamers
    • Nutiu R, Li Y: Structure-switching signaling aptamers. J Am Chem Soc (2003) 125(16):4771-4778.
    • (2003) J. Am. Chem. Soc. , vol.125 , Issue.16 , pp. 4771-4778
    • Nutiu, R.1    Li, Y.2
  • 44
    • 2542601493 scopus 로고    scopus 로고
    • A three-fluorophore FRET assay for high-throughput screening of small-molecule inhibitors of ribosome assembly
    • Klostermeier D, Sears P, Wong CH, Millar DP, Williamson JR: A three-fluorophore FRET assay for high-throughput screening of small-molecule inhibitors of ribosome assembly. Nucleic Acids Res (2004) 32(9):2707-2715.
    • (2004) Nucleic Acids Res. , vol.32 , Issue.9 , pp. 2707-2715
    • Klostermeier, D.1    Sears, P.2    Wong, C.H.3    Millar, D.P.4    Williamson, J.R.5
  • 45
    • 0142075327 scopus 로고    scopus 로고
    • Genetic control by metabolite-binding riboswitches
    • Winkler WC, Breaker RR: Genetic control by metabolite-binding riboswitches. Chembiochem (2003) 4 10):1024-1032.
    • (2003) Chembiochem. , vol.4 , Issue.10 , pp. 1024-1032
    • Winkler, W.C.1    Breaker, R.R.2
  • 46
    • 0346687595 scopus 로고    scopus 로고
    • The riboswitch control of bacterial metabolism
    • Nudler E, Mironov AS: The riboswitch control of bacterial metabolism. Trends Biochem Sci (2004) 29(1):11-17.
    • (2004) Trends Biochem. Sci. , vol.29 , Issue.1 , pp. 11-17
    • Nudler, E.1    Mironov, A.S.2
  • 47
    • 0032500736 scopus 로고    scopus 로고
    • Controlling gene expression in living cells through small molecule-RNA interactions
    • Werstuck G, Green MR: Controlling gene expression in living cells through small molecule-RNA interactions. Science (1998) 282(5387):296-298.
    • (1998) Science , vol.282 , Issue.5387 , pp. 296-298
    • Werstuck, G.1    Green, M.R.2
  • 48
    • 0141677751 scopus 로고    scopus 로고
    • Tetracycline-aptamer-mediated translational regulation in yeast
    • Hanson S, Berthelot K, Fink B, McCarthy JE, Suess B: Tetracycline-aptamer-mediated translational regulation in yeast. Mol Microbiol (2003) 49(6):1627-1637.
    • (2003) Mol. Microbiol. , vol.49 , Issue.6 , pp. 1627-1637
    • Hanson, S.1    Berthelot, K.2    Fink, B.3    McCarthy, J.E.4    Suess, B.5
  • 49
    • 0037388001 scopus 로고    scopus 로고
    • Conditional gene expression by controlling translation with tetracycline-binding aptamers
    • Suess B, Hanson S, Berens C, Fink B, Schroeder R, Hillen W: Conditional gene expression by controlling translation with tetracycline-binding aptamers. Nucleic Acids Res (2003) 31 7):1853-1858.
    • (2003) Nucleic Acids Res. , vol.31 , Issue.7 , pp. 1853-1858
    • Suess, B.1    Hanson, S.2    Berens, C.3    Fink, B.4    Schroeder, R.5    Hillen, W.6
  • 50
    • 2542601538 scopus 로고    scopus 로고
    • A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo
    • Suess B, Fink B, Berens C, Stentz R, Hillen W: A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo. Nucleic Acids Res (2004) 32 4):1610-1614.
    • (2004) Nucleic Acids Res. , vol.32 , Issue.4 , pp. 1610-1614
    • Suess, B.1    Fink, B.2    Berens, C.3    Stentz, R.4    Hillen, W.5
  • 51
    • 0034845858 scopus 로고    scopus 로고
    • Inducible regulation of the S. cerevisiae cell cycle mediated by an RNA aptamer-ligand complex
    • Grate D, Wilson C: Inducible regulation of the S. cerevisiae cell cycle mediated by an RNA aptamer-ligand complex. Bioorg Med Chem (2001) 9(10):2565-2570.
    • (2001) Bioorg. Med. Chem. , vol.9 , Issue.10 , pp. 2565-2570
    • Grate, D.1    Wilson, C.2
  • 53
    • 0037377340 scopus 로고    scopus 로고
    • Rube Goldberg goes (ribo)nuclear? Molecular switches and sensors made from RNA
    • Silverman SK: Rube Goldberg goes (ribo)nuclear? Molecular switches and sensors made from RNA. RNA (2003) 9 4):377-383.
    • (2003) RNA , vol.9 , Issue.4 , pp. 377-383
    • Silverman, S.K.1
  • 54
    • 0036843787 scopus 로고    scopus 로고
    • In vivo-applied functional RNAs as tools in proteomics and genomics research
    • Famulok M, Verma S: In vivo-applied functional RNAs as tools in proteomics and genomics research. Trends Biotechnol (2002) 20(11):462-466.
    • (2002) Trends Biotechnol. , vol.20 , Issue.11 , pp. 462-466
    • Famulok, M.1    Verma, S.2
  • 55
    • 6044261460 scopus 로고    scopus 로고
    • Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation
    • Desai SK, Gallivan JP: Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation. J Am Chem Soc (2004) 126(41):13247-13254.
    • (2004) J. Am. Chem. Soc. , vol.126 , Issue.41 , pp. 13247-13254
    • Desai, S.K.1    Gallivan, J.P.2
  • 56
    • 4344646564 scopus 로고    scopus 로고
    • Engineering a ligand-dependent RNA transcriptional activator
    • Buskirk AR, Landrigan A, Liu DR: Engineering a ligand-dependent RNA transcriptional activator. Chem Biol (2004) 11(8):1157-1163.
    • (2004) Chem. Biol. , vol.11 , Issue.8 , pp. 1157-1163
    • Buskirk, A.R.1    Landrigan, A.2    Liu, D.R.3
  • 57
    • 0033033283 scopus 로고    scopus 로고
    • Laser-mediated, site-specitic inactivation of RNA transcripts
    • Grate D, Wilson C: Laser-mediated, site-specitic inactivation of RNA transcripts. Proc Natl Acad Sci USA (1999) 96(11):6131-6136.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , Issue.11 , pp. 6131-6136
    • Grate, D.1    Wilson, C.2
  • 58
    • 0037863216 scopus 로고    scopus 로고
    • In vivo evolution of an RNA-based transcriptional activator
    • Buskirk AR, Kehayova PD, Landrigan A, Liu DR: In vivo evolution of an RNA-based transcriptional activator. Chem Biol (2003) 10(6):533-540.
    • (2003) Chem. Biol. , vol.10 , Issue.6 , pp. 533-540
    • Buskirk, A.R.1    Kehayova, P.D.2    Landrigan, A.3    Liu, D.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.