-
2
-
-
70350334391
-
Computer-aided design of functional protein interactions
-
Mandell D, Kortemme T, (2009) Computer-aided design of functional protein interactions. Nature Chemical Biology 5: 797-807.
-
(2009)
Nature Chemical Biology
, vol.5
, pp. 797-807
-
-
Mandell, D.1
Kortemme, T.2
-
3
-
-
69249158062
-
Computational design of affinity and specificity at protein-protein interfaces
-
Karanicolas J, Kuhlman B, (2009) Computational design of affinity and specificity at protein-protein interfaces. Current Opinion in Structural Biology 19: 485-463.
-
(2009)
Current Opinion in Structural Biology
, vol.19
, pp. 463-485
-
-
Karanicolas, J.1
Kuhlman, B.2
-
4
-
-
0030793767
-
De Novo protein design: fully automated sequence selection
-
Dahiyat BI, Mayo SL, (1997) De Novo protein design: fully automated sequence selection. Science 278: 82-87.
-
(1997)
Science
, vol.278
, pp. 82-87
-
-
Dahiyat, B.I.1
Mayo, S.L.2
-
5
-
-
0031779918
-
Design, structure and stability of a hyperthermophilic protein variant
-
Malakauskas S, Mayo S, (1998) Design, structure and stability of a hyperthermophilic protein variant. Nature Structural Biology 5: 470-475.
-
(1998)
Nature Structural Biology
, vol.5
, pp. 470-475
-
-
Malakauskas, S.1
Mayo, S.2
-
6
-
-
0033900165
-
Computational design of an integrin I domain stabilized in the open high affinity conformation
-
Shimaoka M, Shifman JM, Jing H, Takagi J, Mayo SL, et al. (2000) Computational design of an integrin I domain stabilized in the open high affinity conformation. Nature Structural Biology 7: 674-678.
-
(2000)
Nature Structural Biology
, vol.7
, pp. 674-678
-
-
Shimaoka, M.1
Shifman, J.M.2
Jing, H.3
Takagi, J.4
Mayo, S.L.5
-
7
-
-
0036300662
-
Accurate computer-based design of a new backbone conformation in the second turn of protein L
-
Kuhlman B, O'Neill JW, Kim DE, Zhang KY, Baker D, (2002) Accurate computer-based design of a new backbone conformation in the second turn of protein L. Journal of Molecular Biology 315: 471-477.
-
(2002)
Journal of Molecular Biology
, vol.315
, pp. 471-477
-
-
Kuhlman, B.1
O'Neill, J.W.2
Kim, D.E.3
Zhang, K.Y.4
Baker, D.5
-
8
-
-
0041387567
-
A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins
-
Dantas G, Kuhlman B, Callender D, Wong M, Baker D, (2003) A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins. Journal of Molecular Biology 332: 449-460.
-
(2003)
Journal of Molecular Biology
, vol.332
, pp. 449-460
-
-
Dantas, G.1
Kuhlman, B.2
Callender, D.3
Wong, M.4
Baker, D.5
-
9
-
-
34547691430
-
Full-sequence computational design and solution structure of a thermostable protein variant
-
Shah PS, Hom GK, Ross SA, Lassila JK, Crowhurst KA, et al. (2007) Full-sequence computational design and solution structure of a thermostable protein variant. Journal of Molecular Biology 372: 1-6.
-
(2007)
Journal of Molecular Biology
, vol.372
, pp. 1-6
-
-
Shah, P.S.1
Hom, G.K.2
Ross, S.A.3
Lassila, J.K.4
Crowhurst, K.A.5
-
10
-
-
63649083644
-
Rationally designed integrin β3 mutants stabilized in the high affinity conformation
-
Luo BH, Karanicolas J, Harmacek LD, Baker D, Springer TA, (2009) Rationally designed integrin β3 mutants stabilized in the high affinity conformation. Journal of Biological Chemistry 284: 3917-3924.
-
(2009)
Journal of Biological Chemistry
, vol.284
, pp. 3917-3924
-
-
Luo, B.H.1
Karanicolas, J.2
Harmacek, L.D.3
Baker, D.4
Springer, T.A.5
-
11
-
-
0032553587
-
High-resolution protein design with backbone freedom
-
Harbury P, Plecs J, Tidor B, Alber T, Kim P, (1998) High-resolution protein design with backbone freedom. Science 282: 1462-1467.
-
(1998)
Science
, vol.282
, pp. 1462-1467
-
-
Harbury, P.1
Plecs, J.2
Tidor, B.3
Alber, T.4
Kim, P.5
-
12
-
-
0345306764
-
Design of a novel globular protein fold with atomic-level accuracy
-
Kuhlman B, Dantas G, Ireton G, Varani G, Stoddard B, et al. (2003) Design of a novel globular protein fold with atomic-level accuracy. Science 302: 1364-1368.
-
(2003)
Science
, vol.302
, pp. 1364-1368
-
-
Kuhlman, B.1
Dantas, G.2
Ireton, G.3
Varani, G.4
Stoddard, B.5
-
13
-
-
78650543850
-
Generation of longer emission wavelength red uorescent proteins using computationally designed libraries
-
Chica RA, Moore MM, Allen BD, Mayo SL, (2010) Generation of longer emission wavelength red uorescent proteins using computationally designed libraries. Proceedings of the National Academy of Sciences, USA 107: 20257-20262.
-
(2010)
Proceedings of the National Academy of Sciences, USA
, vol.107
, pp. 20257-20262
-
-
Chica, R.A.1
Moore, M.M.2
Allen, B.D.3
Mayo, S.L.4
-
14
-
-
78549283794
-
Computational design of orthogonal nucleoside kinases
-
Liu L, Murphy P, Baker D, Lutz S, (2010) Computational design of orthogonal nucleoside kinases. Chemical Communications 46: 8803-8805.
-
(2010)
Chemical Communications
, vol.46
, pp. 8803-8805
-
-
Liu, L.1
Murphy, P.2
Baker, D.3
Lutz, S.4
-
15
-
-
0036315558
-
Computer-aided design of a PDZ domain to recognize new target sequences
-
Reina J, Lacroix E, Hobson S, GFernandez-Ballester, Rybin V, et al. (2002) Computer-aided design of a PDZ domain to recognize new target sequences. Nature Structural Biology 9: 621-627.
-
(2002)
Nature Structural Biology
, vol.9
, pp. 621-627
-
-
Reina, J.1
Lacroix, E.2
Hobson, S.3
GFernandez-Ballester4
Rybin, V.5
-
16
-
-
33745927413
-
Computational design of a new hydrogen bond network and at least a 300-fold specificity switch at a protein-protein interface
-
Joachimiak L, Kortemme T, Stoddard B, Baker D, (2006) Computational design of a new hydrogen bond network and at least a 300-fold specificity switch at a protein-protein interface. Journal of Molecular Biology.
-
(2006)
Journal of Molecular Biology
-
-
Joachimiak, L.1
Kortemme, T.2
Stoddard, B.3
Baker, D.4
-
17
-
-
40449116114
-
De novo computational design of retro-aldol enzymes
-
Jiang L, Althoff EA, Clemente F, Doyle L, Rothlisberger D, et al. (2008) De novo computational design of retro-aldol enzymes. Science 319: 1387-1391.
-
(2008)
Science
, vol.319
, pp. 1387-1391
-
-
Jiang, L.1
Althoff, E.A.2
Clemente, F.3
Doyle, L.4
Rothlisberger, D.5
-
18
-
-
43449098518
-
Kemp elimination catalysts by computational enzyme design
-
Rothlisberger D, Khersonsky O, Wollacott A, Jiang L, DeChancie J, et al. (2008) Kemp elimination catalysts by computational enzyme design. Nature 453: 190-195.
-
(2008)
Nature
, vol.453
, pp. 190-195
-
-
Rothlisberger, D.1
Khersonsky, O.2
Wollacott, A.3
Jiang, L.4
DeChancie, J.5
-
19
-
-
77954811495
-
Computational design of an enzyme catalyst for a steroselective bimolecular diels-alder reaction
-
Siegel J, Zanghellini A, Lovick H, Kiss G, Lambert A, et al. (2010) Computational design of an enzyme catalyst for a steroselective bimolecular diels-alder reaction. Science 329: 309-313.
-
(2010)
Science
, vol.329
, pp. 309-313
-
-
Siegel, J.1
Zanghellini, A.2
Lovick, H.3
Kiss, G.4
Lambert, A.5
-
20
-
-
0023155210
-
Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes
-
Ponder JW, Richards F, (1987) Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes. Journal of Molecular Biology 193: 775-791.
-
(1987)
Journal of Molecular Biology
, vol.193
, pp. 775-791
-
-
Ponder, J.W.1
Richards, F.2
-
21
-
-
1842326139
-
Bayesian statistical analysis of protein side-chain rotamer preferences
-
Dunbrack R Jr, Cohen F, (1997) Bayesian statistical analysis of protein side-chain rotamer preferences. Protein Science 6: 1661-1681.
-
(1997)
Protein Science
, vol.6
, pp. 1661-1681
-
-
Dunbrack Jr., R.1
Cohen, F.2
-
22
-
-
0034663722
-
The penultimate rotamer library
-
Lovell SC, Word JM, Richardson JS, Richardson DC, (2000) The penultimate rotamer library. Proteins: Structure Function and Genetics 40: 389-408.
-
(2000)
Proteins: Structure Function and Genetics
, vol.40
, pp. 389-408
-
-
Lovell, S.C.1
Word, J.M.2
Richardson, J.S.3
Richardson, D.C.4
-
23
-
-
79956017135
-
Computational design of proteins targeting the conserved stem region of inuenza hemagglutinin
-
in press
-
Fleishman SJ, Whitehead TA, Ekiert DC, Dreyfus C, Corn JE, et al. (2011) Computational design of proteins targeting the conserved stem region of inuenza hemagglutinin. Science in press.
-
(2011)
Science
-
-
Fleishman, S.J.1
Whitehead, T.A.2
Ekiert, D.C.3
Dreyfus, C.4
Corn, J.E.5
-
24
-
-
0033009201
-
A method for making multispecific antibodies having heteromultimeric and common components
-
Inc G, (1999) A method for making multispecific antibodies having heteromultimeric and common components. Expert Opinion on Therapeutic Patents 9: 785-790.
-
(1999)
Expert Opinion on Therapeutic Patents
, vol.9
, pp. 785-790
-
-
Inc, G.1
-
25
-
-
30344457881
-
The new face of bispecific antibodies: targeting cancer and much more
-
Lum LG, Davol PA, Lee RJ, (2006) The new face of bispecific antibodies: targeting cancer and much more. Experimental Hematology 34: 1-6.
-
(2006)
Experimental Hematology
, vol.34
, pp. 1-6
-
-
Lum, L.G.1
Davol, P.A.2
Lee, R.J.3
-
26
-
-
0037217406
-
Automated design of specificity in molecular recognition
-
Havranek JJ, Harbury PB, (2003) Automated design of specificity in molecular recognition. Nature Structural Biology 10: 45-52.
-
(2003)
Nature Structural Biology
, vol.10
, pp. 45-52
-
-
Havranek, J.J.1
Harbury, P.B.2
-
27
-
-
31944435091
-
Computational design of a single amino acid sequence that can switch between two distinct protein folds
-
Ambroggio XI, Kuhlman B, (2006) Computational design of a single amino acid sequence that can switch between two distinct protein folds. Journal of the American Chemical Society 128: 1154-1161.
-
(2006)
Journal of the American Chemical Society
, vol.128
, pp. 1154-1161
-
-
Ambroggio, X.I.1
Kuhlman, B.2
-
28
-
-
65249171530
-
Design of protein-interaction specificity gives selective bzip-binding proteins
-
Grigoryan G, Reinke A, Keating A, (2009) Design of protein-interaction specificity gives selective bzip-binding proteins. Nature 458: 859-864.
-
(2009)
Nature
, vol.458
, pp. 859-864
-
-
Grigoryan, G.1
Reinke, A.2
Keating, A.3
-
29
-
-
77956532389
-
Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs
-
Ashworth J, Taylor GK, Havranek JJ, Quadri SA, Stoddard BL, et al. (2010) Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs. Nucleic Acids Research 38: 5601-5608.
-
(2010)
Nucleic Acids Research
, vol.38
, pp. 5601-5608
-
-
Ashworth, J.1
Taylor, G.K.2
Havranek, J.J.3
Quadri, S.A.4
Stoddard, B.L.5
-
30
-
-
78650905964
-
Rosetta3: an object oriented suite for the simulation and design of macromolecules
-
Leaver-Fay A, Tyka M, Lewis SM, Lange OF, Thompson J, et al. (2011) Rosetta3: an object oriented suite for the simulation and design of macromolecules. Methods in Enzymology 487: 545-574.
-
(2011)
Methods in Enzymology
, vol.487
, pp. 545-574
-
-
Leaver-Fay, A.1
Tyka, M.2
Lewis, S.M.3
Lange, O.F.4
Thompson, J.5
-
31
-
-
1642464839
-
Protein structure prediction using rosetta
-
Rohl C, Strauss C, Misura K, Baker D, (2004) Protein structure prediction using rosetta. Methods in Enzymology 383: 66-93.
-
(2004)
Methods in Enzymology
, vol.383
, pp. 66-93
-
-
Rohl, C.1
Strauss, C.2
Misura, K.3
Baker, D.4
-
32
-
-
0036643430
-
Fast and accurate side-chain topology and energy refinement (FASTER) as a new method for protein structure optimization
-
Desmet J, Spriet J, Lasters I, (2002) Fast and accurate side-chain topology and energy refinement (FASTER) as a new method for protein structure optimization. Proteins 48: 31-43.
-
(2002)
Proteins
, vol.48
, pp. 31-43
-
-
Desmet, J.1
Spriet, J.2
Lasters, I.3
-
33
-
-
33745614865
-
Dramatic performance enhancements for the FASTER optimization algorithm
-
Allen BD, Mayo SL, (2006) Dramatic performance enhancements for the FASTER optimization algorithm. Journal of Computational Chemistry 27: 1071-1075.
-
(2006)
Journal of Computational Chemistry
, vol.27
, pp. 1071-1075
-
-
Allen, B.D.1
Mayo, S.L.2
-
35
-
-
5744249209
-
Equation of state calculations by fast computing machines
-
Metropolis N, Rosenbluth A, Rosenbluth M, Teller A, Teller E, (1953) Equation of state calculations by fast computing machines. J Chem Phys 21: 1087-1092.
-
(1953)
J Chem Phys
, vol.21
, pp. 1087-1092
-
-
Metropolis, N.1
Rosenbluth, A.2
Rosenbluth, M.3
Teller, A.4
Teller, E.5
-
37
-
-
15944389004
-
An adaptive dynamic programming algorithm for the side chain placement problem
-
The Big Island, HI, World Scientific
-
Leaver-Fay A, Kuhlman B, Snoeyink J, (2005) An adaptive dynamic programming algorithm for the side chain placement problem. Pacific Symposium on Biocomputing, 2005 The Big Island, HI World Scientific pp. 17-28.
-
(2005)
Pacific Symposium on Biocomputing, 2005
, pp. 17-28
-
-
Leaver-Fay, A.1
Kuhlman, B.2
Snoeyink, J.3
-
39
-
-
0038161052
-
Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations
-
Gray J, Moughon S, Wang C, Schueler-Furman O, Kuhlman B, et al. (2003) Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. Journal of Molecular Biology 331: 281-299.
-
(2003)
Journal of Molecular Biology
, vol.331
, pp. 281-299
-
-
Gray, J.1
Moughon, S.2
Wang, C.3
Schueler-Furman, O.4
Kuhlman, B.5
-
40
-
-
79959959822
-
RosettaScripts: an XML-like interface to the rosetta macromolecular modeling suite
-
submitted
-
Fleishman SJ, Leaver-Fay A, Corn JE, Khare SD, Koga N, et al. (2011) RosettaScripts: an XML-like interface to the rosetta macromolecular modeling suite. PLoS 1 submitted.
-
(2011)
PLoS
, vol.1
-
-
Fleishman, S.J.1
Leaver-Fay, A.2
Corn, J.E.3
Khare, S.D.4
Koga, N.5
-
41
-
-
38849147752
-
Ral GTPases and cancer: linchpin support of the tumorigenic platform
-
Bodemann B, White M, (2008) Ral GTPases and cancer: linchpin support of the tumorigenic platform. Nature Reviews Cancer 8: 133-140.
-
(2008)
Nature Reviews Cancer
, vol.8
, pp. 133-140
-
-
Bodemann, B.1
White, M.2
-
42
-
-
20444410041
-
Activation of RalA is critical for Ras-induced tumorigenesis of human cells
-
Lim K, Baines A, Fiordalisi J, Shipitsin M, Feig L, et al. (2005) Activation of RalA is critical for Ras-induced tumorigenesis of human cells. Cancer Cell 7: 533-545.
-
(2005)
Cancer Cell
, vol.7
, pp. 533-545
-
-
Lim, K.1
Baines, A.2
Fiordalisi, J.3
Shipitsin, M.4
Feig, L.5
-
43
-
-
78649852581
-
RalBP1 is necessary for metastasis of human cancer cell lines
-
Wu Z, Owens C, Chandra N, Popovic K, Conaway M, et al. (2010) RalBP1 is necessary for metastasis of human cancer cell lines. Neoplasia (New York, NY) 12: 969.
-
(2010)
Neoplasia (New York, NY)
, vol.12
, pp. 969
-
-
Wu, Z.1
Owens, C.2
Chandra, N.3
Popovic, K.4
Conaway, M.5
-
44
-
-
77955480325
-
The RalB-RLIP76 complex reveals a novel mode of Ral-effector interaction
-
Fenwick R, Campbell L, Rajasekar K, Prasannan S, Nietlispach D, et al. (2010) The RalB-RLIP76 complex reveals a novel mode of Ral-effector interaction. Structure 18: 985-995.
-
(2010)
Structure
, vol.18
, pp. 985-995
-
-
Fenwick, R.1
Campbell, L.2
Rajasekar, K.3
Prasannan, S.4
Nietlispach, D.5
-
45
-
-
0038602702
-
Structural basis of the interaction between Rala and Sec5, a subunit of the Sec6/8 complex
-
Fukai S, Matern H, Jagath J, Scheller R, Brunger A, (2003) Structural basis of the interaction between Rala and Sec5, a subunit of the Sec6/8 complex. EMBO J 22: 3267-3278.
-
(2003)
EMBO J
, vol.22
, pp. 3267-3278
-
-
Fukai, S.1
Matern, H.2
Jagath, J.3
Scheller, R.4
Brunger, A.5
-
46
-
-
21844443829
-
Exo84 and Sec5 are competitive regulatory Sec6/8 effectors to the RalA GTPase
-
Jin R, Junutula J, Matern H, Ervin K, Scheller R, et al. (2005) Exo84 and Sec5 are competitive regulatory Sec6/8 effectors to the RalA GTPase. EMBO J 24: 2064-2074.
-
(2005)
EMBO J
, vol.24
, pp. 2064-2074
-
-
Jin, R.1
Junutula, J.2
Matern, H.3
Ervin, K.4
Scheller, R.5
-
47
-
-
0029001797
-
Identification and characterization of Ral-binding protein 1, a potential downstream target of Ral GTPases
-
Cantor S, Urano T, Feig L, (1995) Identification and characterization of Ral-binding protein 1, a potential downstream target of Ral GTPases. Molecular and cellular biology 15: 4578.
-
(1995)
Molecular and Cellular Biology
, vol.15
, pp. 4578
-
-
Cantor, S.1
Urano, T.2
Feig, L.3
-
48
-
-
0346154744
-
Ral GTPases regulate exocyst assembly through dual subunit interactions
-
Moskalenko S, Tong C, Rosse C, Mirey G, Formstecher E, et al. (2003) Ral GTPases regulate exocyst assembly through dual subunit interactions. Journal of Biological Chemistry 278: 51743.
-
(2003)
Journal of Biological Chemistry
, vol.278
, pp. 51743
-
-
Moskalenko, S.1
Tong, C.2
Rosse, C.3
Mirey, G.4
Formstecher, E.5
-
49
-
-
2142738304
-
WebLogo: a sequence logo generator
-
Crooks G, Hon G, Chandonia J, Brenner S, (2004) WebLogo: a sequence logo generator. Genome research 14: 1188.
-
(2004)
Genome Research
, vol.14
, pp. 1188
-
-
Crooks, G.1
Hon, G.2
Chandonia, J.3
Brenner, S.4
-
50
-
-
0026589733
-
The dead-end elimination theorem and its use in protein side-chain positioning
-
Desmet J, Maeyer MD, Hazes B, Lasters I, (1992) The dead-end elimination theorem and its use in protein side-chain positioning. Nature 356: 539-541.
-
(1992)
Nature
, vol.356
, pp. 539-541
-
-
Desmet, J.1
Maeyer, M.D.2
Hazes, B.3
Lasters, I.4
-
53
-
-
77949894732
-
Design of multispecific protein sequences using probabilistic graphical modeling
-
Fromer M, Yanover C, Linial M, (2009) Design of multispecific protein sequences using probabilistic graphical modeling. Proteins: Structure Function and Genetics 78: 530-547.
-
(2009)
Proteins: Structure Function and Genetics
, vol.78
, pp. 530-547
-
-
Fromer, M.1
Yanover, C.2
Linial, M.3
-
54
-
-
0029155380
-
A designed heterotrimeric coiled coil
-
Nautiyal S, Woolfson D, King D, Alber T, (1995) A designed heterotrimeric coiled coil. Biochemistry 34: 11645-11651.
-
(1995)
Biochemistry
, vol.34
, pp. 11645-11651
-
-
Nautiyal, S.1
Woolfson, D.2
King, D.3
Alber, T.4
-
55
-
-
33745620457
-
Ultra-fast evaluation of protein energies directly from sequence
-
Grigoryan G, Zhou F, Lustig S, Ceder G, Morgan D, et al. (2006) Ultra-fast evaluation of protein energies directly from sequence. PLoS Computational Biology 2: e63.
-
(2006)
PLoS Computational Biology
, vol.2
-
-
Grigoryan, G.1
Zhou, F.2
Lustig, S.3
Ceder, G.4
Morgan, D.5
-
56
-
-
74549136698
-
Tradeoff between stability and multispecificity in the design of promiscuous proteins
-
Fromer M, Shifman J, (2009) Tradeoff between stability and multispecificity in the design of promiscuous proteins. PLoS Computational Biology 5: 1-16.
-
(2009)
PLoS Computational Biology
, vol.5
, pp. 1-16
-
-
Fromer, M.1
Shifman, J.2
-
57
-
-
77952849163
-
An efficient algorithm for multistate proten design based on FASTER
-
Allen BD, Mayo SL, (2009) An efficient algorithm for multistate proten design based on FASTER. Journal of Computational Chemistry 31: 904-916.
-
(2009)
Journal of Computational Chemistry
, vol.31
, pp. 904-916
-
-
Allen, B.D.1
Mayo, S.L.2
-
58
-
-
33745779058
-
A novel minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles
-
In: Apostolico A, Guerra C, Istrail S, Pevzner P, Waterman M, editors
-
Georgiev I, Lilien R, Donald B, (2006) A novel minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles. In: Apostolico A, Guerra C, Istrail S, Pevzner P, Waterman M, editors. Research in Computational Molecular Biology, Springer Berlin/Heidelberg, volume 3909 of Lecture Notes in Computer Science pp. 530-545.
-
(2006)
Research in Computational Molecular Biology, Springer Berlin/Heidelberg, Volume 3909 of Lecture Notes in Computer Science
, pp. 530-545
-
-
Georgiev, I.1
Lilien, R.2
Donald, B.3
-
59
-
-
31944436020
-
Protein design simulations suggest that side-chain conformational entropy is not a strong determinant of amino acid environmental preferences
-
Hu X, Kuhlman B, (2006) Protein design simulations suggest that side-chain conformational entropy is not a strong determinant of amino acid environmental preferences. Proteins 62: 739-748.
-
(2006)
Proteins
, vol.62
, pp. 739-748
-
-
Hu, X.1
Kuhlman, B.2
-
60
-
-
78650800242
-
Accounting for conforma- tional entropy in predicting binding free energies of protein-protein interactions
-
Kamisetty H, Ramanathan A, Bailey-Kellogg C, Langmead CJ, (2011) Accounting for conforma- tional entropy in predicting binding free energies of protein-protein interactions. Proteins: Structure Function and Genetics 79: 444-462.
-
(2011)
Proteins: Structure Function and Genetics
, vol.79
, pp. 444-462
-
-
Kamisetty, H.1
Ramanathan, A.2
Bailey-Kellogg, C.3
Langmead, C.J.4
-
61
-
-
0036667731
-
Rotamer libraries in the 21st century
-
Dunbrack RL Jr, (2002) Rotamer libraries in the 21st century. Curr Opin Struct Biol 12: 431-440.
-
(2002)
Curr Opin Struct Biol
, vol.12
, pp. 431-440
-
-
Dunbrack Jr., R.L.1
-
62
-
-
33746639718
-
Emergence of protein fold families through rational design
-
Ding F, Dokholyan NV, (2006) Emergence of protein fold families through rational design. PLoS Comput Biol 2: e85.
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Ding, F.1
Dokholyan, N.V.2
-
63
-
-
46449106372
-
The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and scearch algorithm for computing partition functions over molecular ensembles
-
Georgiev I, Lilien RH, Donald BR, (2008) The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and scearch algorithm for computing partition functions over molecular ensembles. Journal of Computational Chemistry 29: 1527-1524.
-
(2008)
Journal of Computational Chemistry
, vol.29
, pp. 1524-1527
-
-
Georgiev, I.1
Lilien, R.H.2
Donald, B.R.3
-
64
-
-
0035909890
-
Side-chain repacking calculations for predicting structures and stabilities of heterodimeric coiled coils
-
Keating A, Malashkevich V, Tidor B, Kim P, (2001) Side-chain repacking calculations for predicting structures and stabilities of heterodimeric coiled coils. Proceedings of the National Academy of Sciences, USA 98: 14825-14830.
-
(2001)
Proceedings of the National Academy of Sciences, USA
, vol.98
, pp. 14825-14830
-
-
Keating, A.1
Malashkevich, V.2
Tidor, B.3
Kim, P.4
|