PseudoPipe: An automated pseudogene identification pipeline

Bioinformatics

Volumn 22, Issue 12, 2006, Pages 1437-1439

  Zhang, Zhaolei ^a   Carriero, Nicholas ^b   Zheng, Deyou ^c   Karro, John ^d   Harrison, Paul M ^e   Gerstein, Mark ^c  

^a UNIVERSITY OF TORONTO   (Canada)

^b Yale University   (United States)

^c YALE UNIVERSITY   (United States)

^d PENNSYLVANIA STATE UNIVERSITY   (United States)

^e MCGILL UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

SPACER DNA;

ALGORITHM; ARTICLE; AUTOMATION; CLASSIFICATION; CLUSTER ANALYSIS; COMPUTER PROGRAM; CONTROLLED STUDY; EXON; GENE DUPLICATION; GENE IDENTIFICATION; INTRON; MAMMAL; MOLECULAR EVOLUTION; PRIORITY JOURNAL; PSEUDOGENE; RETROPOSON; SEQUENCE HOMOLOGY; STOP CODON;

MAMMALIA;

EID: 33745614319     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl116     Document Type: Article

References (8)

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3. Mighell,A.J. et al. (2000) Vertebrate pseudogenes,. FEBS Lett., 468, 109-114.
4. Pearson,W.R. (1997) Comparison of DNA sequences with protein sequences. Genomics, 46, 24-36.
5. Zhang,Z. and Gerstein,M. (2004) Large-scale analysis of pseudogenes in the human genome. Curr. Opin. Genet. Dev., 14, 328-335.
6. Zhang,Z. et al. (2002) Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome. Genome Res., 12, 1466-1482.
7. Zhang,Z. et al. (2003) Millions of years of evolution preserved: A comprehensive catalog of the processed pseudogenes in the human genome. Genome Res., 13, 2541-2558.
8. Zhang,Z. et al. (2004) Comparative analysis of processed pseudogenes in the mouse and human genomes. Trends Genet., 20, 62-67.