Histochemistry: Live and in color

Journal of Histochemistry and Cytochemistry

Volumn 59, Issue 2, 2011, Pages 139-145

  Lavis, Luke D ^a  

^a HOWARD HUGHES MEDICAL INSTITUTE   (United States)

Author keywords

Fluorescence; Fluorescent protein; Fluorophore; Labeling; Microscopy

Indexed keywords

6 O ALKYLGUANINE DNA ALKYLTRANSFERASE; BETA GALACTOSIDASE; LIGAND; LIGASE; NICKEL; NITRILOTRIACETIC ACID; STREPTAVIDIN; ZINC; FLUORESCENT DYE;

CELL LABELING; ENZYME ACTIVITY; FLUORESCENCE; FLUORESCENCE MICROSCOPY; GENETIC MANIPULATION; HISTOCHEMISTRY; HUMAN; MICROSCOPY; ORGANIC CHEMISTRY; PRIORITY JOURNAL; REVIEW; ANIMAL; CELL SURVIVAL; CHEMISTRY; COLOR; CYTOCHEMISTRY; GENETIC ENGINEERING; METABOLISM; METHODOLOGY;

ANIMALS; CELL SURVIVAL; COLOR; FLUORESCENT DYES; GENETIC ENGINEERING; HISTOCYTOCHEMISTRY; HUMANS; LIGASES;

EID: 79953788935     PISSN: 00221554     EISSN: None     Source Type: Journal    
DOI: 10.1369/0022155410395760     Document Type: Review

References (51)

1. Ai H, Shaner N, Cheng Z, Tsien R, Campbell R. 2007. Exploration of new chromophore structures leads to the identification of improved blue fluorescent proteins. Biochemistry. 46: 5904-5910.
2. Beija M, Afonso CM, Martinho JMG. 2009. Synthesis and applications of rhodamine derivatives as fluorescent probes. Chem Soc Rev. 38:2410-2433.
3. Blum G, Von Degenfeld G, Merchant MJ, Blau HM, Bogyo M. 2007. Noninvasive optical imaging of cysteine protease activity using fluorescently quenched activity-based probes. Nat Chem Biol. 3:668-677.
4. Carrico IS, Carlson BL, Bertozzi CR. 2007. Introducing genetically encoded aldehydes into proteins. Nat Chem Biol. 3: 321-322.
5. Chen I, Howarth M, Lin W, Ting AY. 2005. Site-specific labeling of cell surface proteins with biophysical probes using biotin ligase. Nat Methods. 2:99-104.
6. Chudakov DM, Matz MV, Lukyanov S, Lukyanov KA. 2010. Fluorescent proteins and their applications in imaging living cells and tissues. Physiol Rev. 90:1103-1163.
7. Crissman HA, Hirons GT. 1994. Staining of DNA in live and fixed cells. Methods Cell Biol. 41:195-209.
8. Fowler SD, Greenspan P. 1985. Application of Nile red, a fluorescent hydrophobic probe, for the detection of neutral lipid deposits in tissue sections: comparison with oil red O. J Histochem Cytochem. 33:833-836.
9. Gallagher SS, Sable JE, Sheetz MP, Cornish VW. 2009. An in vivo covalent TMP-tag based on proximity-induced reactivity. ACS Chem Biol. 4:547-556.
10. Gautier A, Juillerat A, Heinis C, Corrê IR Jr, Kindermann M, Beaufils F, Johnsson K. 2008. An engineered protein tag for multiprotein labeling in living cells. Chem Biol. 15: 128-136.
11. George N, Pick H, Vogel H, Johnsson N, Johnsson K. 2004. Specific labeling of cell surface proteins with chemically diverse compounds. J Am Chem Soc. 126:8896-8897.
12. Giepmans BNG, Adams SR, Ellisman MH, Tsien RY. 2006. The fluorescent toolbox for assessing protein location and function. Science. 312:217-224.
13. Goldsmith CR, Jaworski J, Sheng M, Lippard SJ. 2006. Selective labeling of extracellular proteins containing polyhistidine sequences by a fluorescein-nitrilotriacetic acid conjugate. J Am Chem Soc. 128:418-419.
14. Griffin BA, Adams SR, Tsien RY. 1998. Specific covalent labeling of recombinant protein molecules inside live cells. Science. 281:269.
15. Gross LA, Baird GS, Hoffman RC, Baldridge KK, Tsien RY. 2000.
16. The structure of the chromophore within DsRed, a red fluorescent protein from coral. Proc Natl Acad Sci U S A. 97:11990-11995.
17. Haugland RP, Spence MTZ, Johnson ID, Basey A. 2005. The handbook: a guide to fluorescent probes and labeling technologies. 10th ed. Eugene (OR): Molecular Probes.
18. Kalia J, Raines RT. 2010. Advances in bioconjugation. Curr Org Chem. 14:138-147.
19. Kelly KA, Carson J, Mccarthy JR, Weissleder R. 2007. Novel peptide sequence ("IQ-tag") with high affinity for NIR fluorochromes allows protein and cell specific labeling for in vivo imaging. PloS One. 2:e665.
20. Kiernan JA. 2008. Histological and histochemical methods: theory and practice. 4th ed. Bloxham, UK: Scion.
21. Komatsu T, Kikuchi K, Takakusa H, Hanaoka K, Ueno T, Kamiya M, Urano Y, Nagano T. 2006. Design and synthesis of an enzyme activity-based labeling molecule with fluorescence spectral change. J Am Chem Soc. 128:15946-15947.
22. Krusemark CJ, Belshaw PJ. 2007. Covalent labelling of fusion proteins in live cells via an engineered receptor-ligand pair. Org Biomol Chem. 5:2201-2204.
23. Lakowicz JR. 2006. Principles of fluorescence spectroscopy. New York: Springer.
24. Lavis LD, Raines RT. 2008. Bright ideas for chemical biology. ACS Chem Biol. 3:142-155.
25. Lichtman JW, Conchello JA. 2005. Fluorescence microscopy. Nat Methods. 2:910-919.
26. Los GV, Encell LP, Mcdougall MG, Hartzell DD, Karassina N, Zimprich C, Wood MG, Learish R, Ohana RF, Urh M. 2008. HaloTag: a novel protein labeling technology for cell imaging and protein analysis. ACS Chem Biol. 3:373-382.
27. Marks KM, Braun PD, Nolan GP. 2004. A general approach for chemical labeling and rapid, spatially controlled protein inactivation. Proc Natl Acad Sci U S A. 101:9982-9987.
28. Maurel D, Banala S, Laroche T, Johnsson K. 2010. Photoactivatable and photoconvertible fluorescent probes for protein labeling. ACS Chem Biol. 5:507-516.
29. Mujumdar SR, Mujumdar RB, Grant CM, Waggoner AS. 1996. Cyanine-labeling reagents: sulfobenzindocyanine succinimidyl esters. Bioconjugate Chem. 7:356-362.
30. Nonaka H, Fujishima S, Uchinomiya S, Ojida A, Hamachi I. 2010. Selective covalent labeling of tag-fused GPCR proteins on live cell surface with a synthetic probe for their functional analysis. J Am Chem Soc. 132;9301-9309.
31. O'Hare H, Johnsson K, Gautier A. 2007. Chemical probes shed light on protein function. Curr Opin Struct Biol. 17:488-494.
32. Piatkevich KD, Verkhusha VV. 2009. Advances in engineering of fluorescent proteins and photoactivatable proteins with red emission. Curr Opin Chem Biol. 14:23-29.
33. Sadaghiani AM, Verhelst SHL, Bogyo M. 2007. Tagging and detection strategies for activity-based proteomics. Curr Opin Chem Biol. 11:20-28.
34. Scaduto RC, Grotyohann LW. 1999. Measurement of mitochondrial membrane potential using fluorescent rhodamine derivatives. Biophys J. 76:469-477.
35. Sharonov A, Hochstrasser RM. 2006. Wide-field subdiffraction imaging by accumulated binding of diffusing probes. Proc Natl Acad Sci U S A. 103:18911-18916.
36. Shu X, Royant A, Lin MZ, Aguilera TA, Lev-Ram V, Steinbach PA, Tsien RY. 2009. Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome. Science. 324:804-807.
37. Smith A, Nie S. 2009. Next-generation quantum dots. Nat Biotech. 27:732-733.
38. Smith PJ, Blunt N, Wiltshire M, Hoy T, Teesdale-Spittle P, Craven MR, Watson JV, Amos WB, Errington RJ, Patterson LH. 2000. Characteristics of a novel deep red/infrared fluorescent cellpermeant DNA probe, DRAQ5, in intact human cells analyzed by flow cytometry, confocal and multiphoton microscopy. Cytometry Part A. 40:280-291.
39. Strebhardt K, Ullrich A. 2008. Paul Ehrlich's magic bullet concept: 100 years of progress. Nat Rev Cancer. 8:473-480.
40. Szent-Gyorgyi C, Schmidt BF, Creeger Y, Fisher GW, Zakel KL, Adler S, Fitzpatrick JAJ, Woolford CA, Yan Q, Vasilev KV. 2007. Fluorogen-activating single-chain antibodies for imaging cell surface proteins. Nat Biotech. 26:235-240.
41. Tsien RY. 1998. The green fluorescent protein. Ann Rev Biochem. 67:509-544.
42. Ulrich G, Ziessel R, Harriman A. 2008. The chemistry of fluorescent BODIPY dyes: versatility unsurpassed. Angew Chem Int Ed. 47:1184-1201.
43. Uttamapinant C, White KA, Baruah H, Thompson S, Fernádez-Suáez M, Puthenveetil S, Ting AY. 2010. A fluorophore ligase for site-specific protein labeling inside living cells. Proc Natl Acad Sci U S A. 107:10914-10919.
44. Valeur B. 2002. Molecular fluorescence: principles and applications. Weinheim, Germany: Wiley-VCH.
45. Vendrell M, Lee J-S, Chang Y-T. 2010. Diversity-oriented fluorescence library approaches for probe discovery and development. Curr Op Chem Biol. 14:383-389.
46. Watkins RW, Lavis LD, Kung VM, Los GV, Raines RT. 2009. Fluorogenic affinity label for the facile, rapid imaging of proteins in live cells. Org Biomol Chem. 7:3969-3975.
47. Wombacher R, Heidbreder M, Van De Linde S, Sheetz MP, Heilemann M, Cornish VW, Sauer M. 2010. Live-cell superresolution imaging with trimethoprim conjugates. Nat Methods. 7:717-719.
48. Wu MM, Llopis J, Adams SR, McCaffery JM, Teter K, Kulomaa MS, Machen TE, Moore HPH, Tsien RY. 2000. Studying organelle physiology with fusion protein-targeted avidin and fluorescent biotin conjugates. Methods Enzymol. 327:546-564.
49. Yin J, Straight PD, Mcloughlin SM, Zhou Z, Lin AJ, Golan DE, Kelleher NL, Kolter R, Walsh CT. 2005. Genetically encoded short peptide tag for versatile protein labeling by Sfp phosphopantetheinyl transferase. Proc Natl Acad Sci U S A. 102:15815-15820.
50. Young TS, Schultz PG. 2010. Beyond the canonical 20 amino acids: Expanding the genetic lexicon. J Biol Chem. 285:11039-11044.
51. + currents. Biochem Pharmacol. 67:1437-1444.