메뉴 건너뛰기




Volumn 9, Issue 6, 2007, Pages 1464-1475

Assessing diversity and biogeography of aerobic anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific Oceans using the Global Ocean Sampling expedition metagenomes

Author keywords

[No Author keywords available]

Indexed keywords

PIGMENT; SEA WATER;

EID: 34248573531     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2007.01265.x     Document Type: Article
Times cited : (150)

References (42)
  • 1
    • 0035403872 scopus 로고    scopus 로고
    • Photosynthetic and phylogenetic primers for detection of anoxygenic phototrophs in natural environments
    • Achenbach, L.A., Carey, J. Madigan, M.T. (2001) Photosynthetic and phylogenetic primers for detection of anoxygenic phototrophs in natural environments. Appl Environ Microbiol 67 : 2922 2926.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 2922-2926
    • Achenbach, L.A.1    Carey, J.2    Madigan, M.T.3
  • 2
    • 0141816894 scopus 로고    scopus 로고
    • Aerobic anoxygenic photosynthesis in Roseobacter clade bacteria from diverse marine habitats
    • Allgaier, M., Uphoff, H. Wagner-Dobler, I. (2003) Aerobic anoxygenic photosynthesis in Roseobacter clade bacteria from diverse marine habitats. Appl Environ Microbiol 69 : 5051 5059.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5051-5059
    • Allgaier, M.1    Uphoff, H.2    Wagner-Dobler, I.3
  • 7
    • 33644853451 scopus 로고    scopus 로고
    • Aerobic anoxygenic phototrophic bacteria in the Mid-Atlantic Bight and the North Pacific Gyre
    • Cottrell, M.T., Mannino, A. Kirchman, D.L. (2006) Aerobic anoxygenic phototrophic bacteria in the Mid-Atlantic Bight and the North Pacific Gyre. Appl Environ Microbiol 72 : 557 564.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 557-564
    • Cottrell, M.T.1    Mannino, A.2    Kirchman, D.L.3
  • 8
    • 31344470375 scopus 로고    scopus 로고
    • Real-time PCR for quantification of aerobic anoxygenic phototrophic bacteria based on pufM gene in marine environment
    • Du, H., Jiao, N., Hu, Y. Zeng, Y. (2006) Real-time PCR for quantification of aerobic anoxygenic phototrophic bacteria based on pufM gene in marine environment. J Exp Mar Biol Ecol 329 : 113 121.
    • (2006) J Exp Mar Biol Ecol , vol.329 , pp. 113-121
    • Du, H.1    Jiao, N.2    Hu, Y.3    Zeng, Y.4
  • 9
    • 0035514014 scopus 로고    scopus 로고
    • Isolation of novel pelagic bacteria from the german bight and their seasonal contributions to surface picoplankton
    • Eilers, H., Pernthaler, J., Peplies, J., Glockner, F.O., Gerdts, G. Amann, R. (2001) Isolation of novel pelagic bacteria from the german bight and their seasonal contributions to surface picoplankton. Appl Environ Microbiol 67 : 5134 5142.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 5134-5142
    • Eilers, H.1    Pernthaler, J.2    Peplies, J.3    Glockner, F.O.4    Gerdts, G.5    Amann, R.6
  • 10
    • 0033754255 scopus 로고    scopus 로고
    • Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria
    • Glockner, F.O., Zaichikov, E., Belkova, N., Denissova, L., Pernthaler, J., Pernthaler, A. Amann, R. (2000) Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria. Appl Env Microbiol 66 : 5053 5065.
    • (2000) Appl Env Microbiol , vol.66 , pp. 5053-5065
    • Glockner, F.O.1    Zaichikov, E.2    Belkova, N.3    Denissova, L.4    Pernthaler, J.5    Pernthaler, A.6    Amann, R.7
  • 11
    • 0036161478 scopus 로고    scopus 로고
    • Bacteriochlorophyll a in the ocean: Is anoxygenic bacterial photosynthesis important?
    • Goericke, R. (2002) Bacteriochlorophyll a in the ocean: is anoxygenic bacterial photosynthesis important? Limnol Oceanogr 47 : 290 295.
    • (2002) Limnol Oceanogr , vol.47 , pp. 290-295
    • Goericke, R.1
  • 12
    • 0030931040 scopus 로고    scopus 로고
    • Both DNA gyrase and reverse gyrase are present in the hyperthermophilic bacterium Thermotoga maritima
    • Guipaud, O., Marguet, E., Noll, K.M., de la Tour, C.B. Forterre, P. (1997) Both DNA gyrase and reverse gyrase are present in the hyperthermophilic bacterium Thermotoga maritima. Proc Natl Acad Sci USA 94 : 10606 10611.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 10606-10611
    • Guipaud, O.1    Marguet, E.2    Noll, K.M.3    De La Tour, C.B.4    Forterre, P.5
  • 13
    • 0025975919 scopus 로고
    • Rhodoferax fermentans gen. nov. and sp. nov., a phototrophic purple non-sulfur bacterium previously referred to as the 'Rhodocyclus gelatinosus-like' group
    • Hiraishi, A., Hoshimao, Y. Satoh, T. (1991) Rhodoferax fermentans gen. nov. and sp. nov., a phototrophic purple non-sulfur bacterium previously referred to as the 'Rhodocyclus gelatinosus-like' group. Arch Microbiol 153 : 330 336.
    • (1991) Arch Microbiol , vol.153 , pp. 330-336
    • Hiraishi, A.1    Hoshimao, Y.2    Satoh, T.3
  • 15
    • 0042029315 scopus 로고    scopus 로고
    • Remarkable diversity of phototrophic purple bacteria in a permanently frozen Antarctic lake
    • Karr, E.A., Sattley, W.M., Jung, D.O., Madigan, M.T. Achenbach, L.A. (2003) Remarkable diversity of phototrophic purple bacteria in a permanently frozen Antarctic lake. Appl Environ Microbiol 69 : 4910 4914.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 4910-4914
    • Karr, E.A.1    Sattley, W.M.2    Jung, D.O.3    Madigan, M.T.4    Achenbach, L.A.5
  • 16
    • 12344259816 scopus 로고    scopus 로고
    • Diel changes in bacteriochlorophyll a concentration suggest rapid bacterioplankton cycling in the Baltic Sea
    • Koblízek, M., Ston-Egiert, J., Sagan, S. Kolber, Z.S. (2005) Diel changes in bacteriochlorophyll a concentration suggest rapid bacterioplankton cycling in the Baltic Sea. FEMS Microbiol Ecol 51 : 353 361.
    • (2005) FEMS Microbiol Ecol , vol.51 , pp. 353-361
    • Koblízek, M.1    Ston-Egiert, J.2    Sagan, S.3    Kolber, Z.S.4
  • 18
    • 0034648788 scopus 로고    scopus 로고
    • Bacterial photosynthesis in surface waters of the open ocean
    • Kolber, Z.S., Van Dover, C.L., Niderman, R.A. Falkowski, P.G. (2000) Bacterial photosynthesis in surface waters of the open ocean. Nature 407 : 177 179.
    • (2000) Nature , vol.407 , pp. 177-179
    • Kolber, Z.S.1    Van Dover, C.L.2    Niderman, R.A.3    Falkowski, P.G.4
  • 19
    • 0035967937 scopus 로고    scopus 로고
    • Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean
    • Kolber, Z.S., Plumley, F.G., Lang, A.S., Beatty, J.T., Blankenship, R.E., VanDover, C.L., et al. (2001) Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean. Science 292 : 2492 2495.
    • (2001) Science , vol.292 , pp. 2492-2495
    • Kolber, Z.S.1    Plumley, F.G.2    Lang, A.S.3    Beatty, J.T.4    Blankenship, R.E.5    Vandover, C.L.6
  • 21
    • 0034115226 scopus 로고    scopus 로고
    • Rhodoferax antarcticus sp. nov., a moderately psychrophilic purple nonsulfur bacterium isolated from an Antarctic microbial mat
    • Madigan, M.T., Jung, D.O., Woese, C.R. Achenbach, L.A. (2000) Rhodoferax antarcticus sp. nov., a moderately psychrophilic purple nonsulfur bacterium isolated from an Antarctic microbial mat. Arch Microbiol 173 : 269 277.
    • (2000) Arch Microbiol , vol.173 , pp. 269-277
    • Madigan, M.T.1    Jung, D.O.2    Woese, C.R.3    Achenbach, L.A.4
  • 22
    • 0030879863 scopus 로고    scopus 로고
    • Horizontal transfer of genes coding for the photosynthetic reaction centers of purple bacteria
    • Nagashima, K.V.P., Hiraishi, A., Shimada, K. Matsuura, K. (1997) Horizontal transfer of genes coding for the photosynthetic reaction centers of purple bacteria. J Mol Evol 45 : 131 136.
    • (1997) J Mol Evol , vol.45 , pp. 131-136
    • Nagashima, K.V.P.1    Hiraishi, A.2    Shimada, K.3    Matsuura, K.4
  • 23
    • 12244267987 scopus 로고    scopus 로고
    • Roseobacter-like bacteria in Red and Mediterranean Sea aerobic anoxygenic photosynthetic populations
    • Oz, A., Sabehi, G., Koblízek, M., Massana, R. Béjà, O. (2005) Roseobacter-like bacteria in Red and Mediterranean Sea aerobic anoxygenic photosynthetic populations. Appl Environ Microbiol 71 : 344 353.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 344-353
    • Oz, A.1    Sabehi, G.2    Koblízek, M.3    Massana, R.4    Béjà, O.5
  • 24
    • 8744314922 scopus 로고    scopus 로고
    • Representative freshwater bacterioplankton isolated from Crater Lake, Oregon
    • Page, K.A., Connon, S.A. Giovannoni, S.J. (2004) Representative freshwater bacterioplankton isolated from Crater Lake, Oregon. Appl Env Microbiol 70 : 6542 6550.
    • (2004) Appl Env Microbiol , vol.70 , pp. 6542-6550
    • Page, K.A.1    Connon, S.A.2    Giovannoni, S.J.3
  • 25
    • 2942627192 scopus 로고    scopus 로고
    • Genome organization and localization of the pufLM genes of the photosynthesis reaction center in phylogenetically diverse marine Alphaproteobacteria
    • Pradella, S., Allgaier, M., Hoch, C., Pauker, O., Stackebrandt, E. Wagner-Dobler, I. (2004) Genome organization and localization of the pufLM genes of the photosynthesis reaction center in phylogenetically diverse marine Alphaproteobacteria. Appl Environ Microbiol 70 : 3360 3369.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 3360-3369
    • Pradella, S.1    Allgaier, M.2    Hoch, C.3    Pauker, O.4    Stackebrandt, E.5    Wagner-Dobler, I.6
  • 26
    • 0037315735 scopus 로고    scopus 로고
    • Evolutionary implications of microbial genome tetranucleotide frequency biases
    • Pride, D.T., Meinersmann, R.J., Wassenaar, T.M. Blaser, M.J. (2003) Evolutionary implications of microbial genome tetranucleotide frequency biases. Genome Res 13 : 145 158.
    • (2003) Genome Res , vol.13 , pp. 145-158
    • Pride, D.T.1    Meinersmann, R.J.2    Wassenaar, T.M.3    Blaser, M.J.4
  • 27
    • 0031395502 scopus 로고    scopus 로고
    • Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina
    • Rappé, M.S., Kemp, P.F. Giovannoni, S.J. (1997) Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina. Limnol Oceanogr 42 : 811 826.
    • (1997) Limnol Oceanogr , vol.42 , pp. 811-826
    • Rappé, M.S.1    Kemp, P.F.2    Giovannoni, S.J.3
  • 28
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist, F. Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 : 1572 1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 30
    • 15944387774 scopus 로고    scopus 로고
    • Wide-ranging abundances of aerobic anoxygenic phototrophic bacteria in the world ocean revealed by epifluorescence microscopy and quantitative PCR
    • Schwalbach, M.S. Fuhrman, J.A. (2005) Wide-ranging abundances of aerobic anoxygenic phototrophic bacteria in the world ocean revealed by epifluorescence microscopy and quantitative PCR. Limnol Oceanogr 50 : 620 628.
    • (2005) Limnol Oceanogr , vol.50 , pp. 620-628
    • Schwalbach, M.S.1    Fuhrman, J.A.2
  • 31
    • 22044454252 scopus 로고    scopus 로고
    • Impact of light on marine bacterioplankton community structure
    • Schwalbach, M.S., Brown, M. Fuhrman, J.A. (2005) Impact of light on marine bacterioplankton community structure. Aquat Microb Ecol 39 : 235 245.
    • (2005) Aquat Microb Ecol , vol.39 , pp. 235-245
    • Schwalbach, M.S.1    Brown, M.2    Fuhrman, J.A.3
  • 32
    • 32944478585 scopus 로고    scopus 로고
    • Distribution of planktonic aerobic anoxygenic photoheterotrophic bacteria in the northwest Atlantic
    • Sieracki, M.E., Gilg, I.C., Thier, E.C., Poulton, N.J. Goericke, R. (2006) Distribution of planktonic aerobic anoxygenic photoheterotrophic bacteria in the northwest Atlantic. Limnol Oceanogr 51 : 38 46.
    • (2006) Limnol Oceanogr , vol.51 , pp. 38-46
    • Sieracki, M.E.1    Gilg, I.C.2    Thier, E.C.3    Poulton, N.J.4    Goericke, R.5
  • 33
    • 33846592314 scopus 로고    scopus 로고
    • The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic as opposed to photosynthetic metabolism
    • Swingley, W.D., Sadekar, S., Mastrian, S.D., Matthies, H.J., Hao, J., Ramos, H., et al. (2007) The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic as opposed to photosynthetic metabolism. J Bacteriol 189 : 683 690.
    • (2007) J Bacteriol , vol.189 , pp. 683-690
    • Swingley, W.D.1    Sadekar, S.2    Mastrian, S.D.3    Matthies, H.J.4    Hao, J.5    Ramos, H.6
  • 34
    • 13244253777 scopus 로고    scopus 로고
    • TETRA: A web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences
    • Teeling, H., Waldmann, J., Lombardot, T., Bauer, M. Glockner, F.O. (2004) TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences. BMC Bioinformatics 5 : 163.
    • (2004) BMC Bioinformatics , vol.5 , pp. 163
    • Teeling, H.1    Waldmann, J.2    Lombardot, T.3    Bauer, M.4    Glockner, F.O.5
  • 36
    • 28644435670 scopus 로고    scopus 로고
    • Aerobic anoxygenic photosynthesis genes and operons in uncultured bacteria in the Delaware River
    • Waidner, L.A. Kirchman, D.L. (2005) Aerobic anoxygenic photosynthesis genes and operons in uncultured bacteria in the Delaware River. Environ Microbiol 7 : 1896 1908.
    • (2005) Environ Microbiol , vol.7 , pp. 1896-1908
    • Waidner, L.A.1    Kirchman, D.L.2
  • 37
    • 2442717681 scopus 로고    scopus 로고
    • Arabidopsis thaliana DNA gyrase is targeted to chloroplasts and mitochondria
    • Wall, M.K., Mitchenall, L.A. Maxwell, A. (2004) Arabidopsis thaliana DNA gyrase is targeted to chloroplasts and mitochondria. Proc Natl Acad Sci USA 101 : 7821 7826.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 7821-7826
    • Wall, M.K.1    Mitchenall, L.A.2    Maxwell, A.3
  • 38
    • 8444238946 scopus 로고    scopus 로고
    • Evolution of the RNA polymerase B′ subunit gene (rpoB′) in Halobacteriales: A complementary molecular marker to the SSU rRNA gene
    • Walsh, D.A., Bapteste, E., Kamekura, M. Doolittle, W.F. (2004) Evolution of the RNA polymerase B′ subunit gene (rpoB′) in Halobacteriales: a complementary molecular marker to the SSU rRNA gene. Mol Biol Evol 21 : 2340 2351.
    • (2004) Mol Biol Evol , vol.21 , pp. 2340-2351
    • Walsh, D.A.1    Bapteste, E.2    Kamekura, M.3    Doolittle, W.F.4
  • 40
    • 0031665356 scopus 로고    scopus 로고
    • Aerobic anoxygenic phototrophic bacteria
    • Yurkov, V.V. Beatty, J.T. (1998) Aerobic anoxygenic phototrophic bacteria. Microbiol Mol Biol Rev 62 : 695 724.
    • (1998) Microbiol Mol Biol Rev , vol.62 , pp. 695-724
    • Yurkov, V.V.1    Beatty, J.T.2
  • 41
    • 28644449137 scopus 로고    scopus 로고
    • Putative novel photosynthetic reaction center organizations in marine aerobic anoxygenic photosynthetic bacteria: Insights from environmental genomics and metagenomics
    • Yutin, N. Béjà, O. (2005) Putative novel photosynthetic reaction center organizations in marine aerobic anoxygenic photosynthetic bacteria: insights from environmental genomics and metagenomics. Environ Microbiol 7 : 2027 2033.
    • (2005) Environ Microbiol , vol.7 , pp. 2027-2033
    • Yutin, N.1    Béjà, O.2
  • 42
    • 29144450328 scopus 로고    scopus 로고
    • Novel primers reveal a wider diversity among marine aerobic anoxygenic phototrophs
    • Yutin, N., Suzuki, M.T. Béjà, O. (2005) Novel primers reveal a wider diversity among marine aerobic anoxygenic phototrophs. Appl Env Microbiol 71 : 8958 8962.
    • (2005) Appl Env Microbiol , vol.71 , pp. 8958-8962
    • Yutin, N.1    Suzuki, M.T.2    Béjà, O.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.