-
1
-
-
33751059692
-
The marine viromes of four oceanic regions
-
Angly, F.E., B. Felts, M. Breitbart, P. Salamon, R.A. Edwards, C. Carlson, A.M. Chan, M. Haynes, S. Kelley, H. Liu, and others. 2006. The marine viromes of four oceanic regions. PLoS Biology 4.
-
(2006)
PLoS Biology
, pp. 4
-
-
Angly, F.E.1
Felts, B.2
Breitbart, M.3
Salamon, P.4
Edwards, R.A.5
Carlson, C.6
Chan, A.M.7
Haynes, M.8
Kelley, S.9
Liu, H.10
-
2
-
-
84983711696
-
Studies on the chemical nature of the substance inducing transformation of pneumococcal types
-
Avery, O.T., C.M. MacLeod, and M. McCarty. 1944. Studies on the chemical nature of the substance inducing transformation of pneumococcal types. Journal of Experimental Medicine 79:137-158.
-
(1944)
Journal of Experimental Medicine
, vol.79
, pp. 137-158
-
-
Avery, O.T.1
McLeod, C.M.2
McCarty, M.3
-
3
-
-
11244344329
-
Neoplastic diseases of commercially important marine bivalves
-
Barber, B.J. 2004. Neoplastic diseases of commercially important marine bivalves. Aquatic Living Resources 17:449-466.
-
(2004)
Aquatic Living Resources
, vol.17
, pp. 449-466
-
-
Barber, B.J.1
-
4
-
-
2942541402
-
To BAC or not to BAC: Marine ecogenomics
-
Béjà, O. 2004. To BAC or not to BAC: Marine ecogenomics. Current Opinion in Biotechnology 15:187-190.
-
(2004)
Current Opinion in Biotechnology
, vol.15
, pp. 187-190
-
-
Béjà, O.1
-
5
-
-
0034665853
-
Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
-
Béjà, O., L. Aravind, E.V. Koonin, M.T. Suzuki, A. Hadd, L.P. Nguyen, S.B. Jovanovich, C.M. Gates, R.A. Feldman, J.L. Spudich, and others. 2000. Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea. Science 289:1,902-1,906.
-
(2000)
Science
, vol.289
, pp. 1902-1906
-
-
Béjà, O.1
Aravind, L.2
Koonin, E.V.3
Suzuki, M.T.4
Hadd, A.5
Nguyen, L.P.6
Jovanovich, S.B.7
Gates, C.M.8
Feldman, R.A.9
Spudich, J.L.10
-
7
-
-
19144362371
-
Microbial community genomics in the ocean
-
DeLong, E.F. 2005. Microbial community genomics in the ocean. Nature Reviews Microbiology 3:459-469.
-
(2005)
Nature Reviews Microbiology
, vol.3
, pp. 459-469
-
-
DeLong, E.F.1
-
8
-
-
31544483932
-
Community genomics among stratified microbial assemblages in the ocean's interior
-
DeLong, E.F., C.M. Preston, T. Mincer, V. Rich, S.J. Hallam, N.U. Frigaard, A. Martinez, M.B. Sullivan, R. Edwards, B.R. Brito, and others. 2006. Community genomics among stratified microbial assemblages in the ocean's interior. Science 311:496-503.
-
(2006)
Science
, vol.311
, pp. 496-503
-
-
DeLong, E.F.1
Preston, C.M.2
Mincer, T.3
Rich, V.4
Hallam, S.J.5
Frigaard, N.U.6
Martinez, A.7
Sullivan, M.B.8
Edwards, R.9
Brito, B.R.10
-
9
-
-
33745595097
-
Using pyrosequencing to shed light on deep mine microbial ecology under extreme hydrogeologic conditions
-
Edwards, R.A., B. Rodriguez-Brito, L. Wegley, M. Haynes, M. Breitbart, D.M. Peterson, M.O. Saar, S. Alexander, E.C. Alexander Jr., and F. Rohwer. 2006. Using pyrosequencing to shed light on deep mine microbial ecology under extreme hydrogeologic conditions. BMC Genomics 7:57.
-
(2006)
BMC Genomics
, vol.7
, pp. 57
-
-
Edwards, R.A.1
Rodriguez-Brito, B.2
Wegley, L.3
Haynes, M.4
Breitbart, M.5
Peterson, D.M.6
Saar, M.O.7
Alexander, S.8
Alexander Jr, E.C.9
Rohwer, F.10
-
10
-
-
1842581812
-
Shotgun sequencing in the sea: A blast from the past?
-
Falkowski, P.G., and C. Vargas. 2004. Shotgun sequencing in the sea: A blast from the past? Science 304:58-60.
-
(2004)
Science
, vol.304
, pp. 58-60
-
-
Falkowski, P.G.1
Vargas, C.2
-
11
-
-
84860185401
-
Towards a richer description of our complete collection of genomes and metagenomes: The "Minimum Information about a Genome Sequence" (MIGS) specification
-
In press
-
Field, D., G. Garrity, T. Gray, N. Morrison, J. Selengut, P. Sterk, T. Tatusova, N. Thomson, M.J. Allen, M. Ashburner, and others. In press. Towards a richer description of our complete collection of genomes and metagenomes: The "Minimum Information about a Genome Sequence" (MIGS) specification. Nature Biotechnology.
-
Nature Biotechnology
-
-
Field, D.1
Garrity, G.2
Gray, T.3
Morrison, N.4
Selengut, J.5
Sterk, P.6
Tatusova, T.7
Thomson, N.8
Allen, M.J.9
Ashburner, M.10
-
12
-
-
0026525546
-
Novel major archaebacterial group from marine plankton
-
Fuhrman, J.A., K. McCallum, and A.A. Davis. 1992. Novel major archaebacterial group from marine plankton. Nature 356:148-149.
-
(1992)
Nature
, vol.356
, pp. 148-149
-
-
Fuhrman, J.A.1
McCallum, K.2
Davis, A.A.3
-
13
-
-
4444370893
-
Reverse methanogenesis: Testing the hypothesis with environmental genomics
-
Hallam, S.J., N. Putnam, C.M. Preston, J.C. Detter, D. Rokhsar, P.M. Richardson, and E.F. DeLong. 2004. Reverse methanogenesis: Testing the hypothesis with environmental genomics. Science 305:1,457-1,462.
-
(2004)
Science
, vol.305
, pp. 1457-1462
-
-
Hallam, S.J.1
Putnam, N.2
Preston, C.M.3
Detter, J.C.4
Rokhsar, D.5
Richardson, P.M.6
DeLong, E.F.7
-
14
-
-
33846247798
-
Metagenomic approach for the isolation of a novel low-temperature-active lipase from uncultured bacteria of marine sediment
-
Hårdeman, F., and S. Sjöling. 2007. Metagenomic approach for the isolation of a novel low-temperature-active lipase from uncultured bacteria of marine sediment. FEMS Microbiology Ecology 59:524-534.
-
(2007)
FEMS Microbiology Ecology
, vol.59
, pp. 524-534
-
-
Hårdeman, F.1
Sjöling, S.2
-
15
-
-
8744305332
-
The rising tide of ocean diseases: Unsolved problems and research priorities
-
Harvell, D., R. Aronson, N. Baron, J. Connell, A. Dobson, S. Ellner, L. Gerber, K. Kim, A. Kuris, H. McCallum, and others. 2004. The rising tide of ocean diseases: Unsolved problems and research priorities. Frontiers in Ecology and the Environment 2:375-382.
-
(2004)
Frontiers in Ecology and the Environment
, vol.2
, pp. 375-382
-
-
Harvell, D.1
Aronson, R.2
Baron, N.3
Connell, J.4
Dobson, A.5
Ellner, S.6
Gerber, L.7
Kim, K.8
Kuris, A.9
McCallum, H.10
-
16
-
-
0031902076
-
Gene transfer by transduction in the marine environment
-
Jiang, S.C., and J.H. Paul. 1998. Gene transfer by transduction in the marine environment. Applied and Environmental Microbiology 64:2,780-2,787.
-
(1998)
Applied and Environmental Microbiology
, vol.64
, pp. 2780-2787
-
-
Jiang, S.C.1
Paul, J.H.2
-
17
-
-
26944493400
-
Metagenomics-based drug discovery and marine microbial diversity
-
Li, X., and L. Qin. 2005. Metagenomics-based drug discovery and marine microbial diversity. Trends in Biotechnology 23:539-543.
-
(2005)
Trends in Biotechnology
, vol.23
, pp. 539-543
-
-
Li, X.1
Qin, L.2
-
18
-
-
33644876938
-
Megx. net-database resources for marine ecological genomics
-
doi: 10.1093/nar/gkj070
-
Lombardot, T., R. Kottmann, H. Pfeffer, M. Richter, H. Teeling, C. Quast, and F.O. Glöckner. 2006. Megx. net-database resources for marine ecological genomics. Nucleic Acids Research 34:D390-393, doi: 10.1093/nar/gkj070.
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Lombardot, T.1
Kottmann, R.2
Pfeffer, H.3
Richter, M.4
Teeling, H.5
Quast, C.6
Glöckner, F.O.7
-
19
-
-
34547701247
-
Multilocus sequence typing breathes life into a microbial metagenome
-
Mahenthiralingam, E., A. Baldwin, P. Drevinek, E. Vanlaere, P. Vandamme, J.J. Lipuma, and C.G. Dowson. 2006. Multilocus sequence typing breathes life into a microbial metagenome. PLoS ONE 1:e17.
-
(2006)
PLoS ONE
, vol.1
-
-
Mahenthiralingam, E.1
Baldwin, A.2
Drevinek, P.3
Vanlaere, E.4
Vandamme, P.5
Lipuma, J.J.6
Dowson, C.G.7
-
20
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies, M., M. Egholm, W.E. Altman, S. Attiya, J.S. Bader, L.A. Bemben, J. Berka, M.S. Braverman, Y.J. Chen, Z. Chen, and others. 2005. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437:376-380
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braverman, M.S.8
Chen, Y.J.9
Chen, Z.10
-
21
-
-
0034114417
-
A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces
-
Massana, R., E.F. DeLong, and C. Pedros-Alio. 2000. A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces. Applied and Environmental Microbiology 66:1,777-1,787.
-
(2000)
Applied and Environmental Microbiology
, vol.66
, pp. 1777-1787
-
-
Massana, R.1
DeLong, E.F.2
Pedros-Alio, C.3
-
22
-
-
0033055062
-
The use of gene clusters to infer functional coupling
-
Overbeek, R., M. Fonstein, M. D'Souza, G.D. Pusch, and N. Maltsev. 1999. The use of gene clusters to infer functional coupling. Proceedings of the National Academy of Sciences of the United States of America 96:2,896-2,901.
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, pp. 2896-2901
-
-
Overbeek, R.1
Fonstein, M.2
D'Souza, M.3
Pusch, G.D.4
Maltsev, N.5
-
23
-
-
33846914243
-
Global patterns of diversity and community structure in marine bacterioplankton
-
Pommier, T., B. Canback, L. Riemann, K.H. Bostrom, K. Simu, P. Lundberg, A. Tunlid, and A. Hagstrom. 2007. Global patterns of diversity and community structure in marine bacterioplankton. Molecular Ecology 16:867-880.
-
(2007)
Molecular Ecology
, vol.16
, pp. 867-880
-
-
Pommier, T.1
Canback, B.2
Riemann, L.3
Bostrom, K.H.4
Simu, K.5
Lundberg, P.6
Tunlid, A.7
Hagstrom, A.8
-
24
-
-
34247221045
-
The role of ecological theory in microbial ecology
-
Prosser, J.I., B.J. Bohannan, T.P. Curtis, R.J. Ellis, M.K. Firestone, R.P. Freckleton, J.L. Green, L.E. Green, K. Killham, J.J. Lennon, and others. 2007. The role of ecological theory in microbial ecology. Nature Reviews Microbiology 5:384-392.
-
(2007)
Nature Reviews Microbiology
, vol.5
, pp. 384-392
-
-
Prosser, J.I.1
Bohannan, B.J.2
Curtis, T.P.3
Ellis, R.J.4
Firestone, M.K.5
Freckleton, R.P.6
Green, J.L.7
Green, L.E.8
Killham, K.9
Lennon, J.J.10
-
27
-
-
33947238287
-
The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through Eastern Tropical Pacific
-
Rusch, D.B., A.L. Halpern, G. Sutton, K.B. Heidelberg, S. Williamson, S. Yooseph, D. Wu, J.A. Eisen, J.M. Hoffman, K. Remington, and others. 2007. The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through Eastern Tropical Pacific. PLoS Biology 5:e77.
-
(2007)
PLoS Biology
, vol.5
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
Heidelberg, K.B.4
Williamson, S.5
Yooseph, S.6
Wu, D.7
Eisen, J.A.8
Hoffman, J.M.9
Remington, K.10
-
28
-
-
0017681196
-
DNA sequencing with chain-terminating inhibitors
-
Sanger, F., S. Nicklen, and A.R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proceedings of the National Academy of Sciences of the United States of America 74:5,463-5,467.
-
(1977)
Proceedings of the National Academy of Sciences of the United States of America
, vol.74
, pp. 5463-5467
-
-
Sanger, F.1
Nicklen, S.2
Coulson, A.R.3
-
30
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored "rare biosphere. "
-
Sogin, M.L., H.G. Morrison, J.A. Huber, D.M. Welch, S.M. Huse, P.R. Neal, J.M. Arrieta, and G.J. Herndl. 2006. Microbial diversity in the deep sea and the underexplored "rare biosphere. " Proceedings of the National Academy of Sciences of the United States of America 103:12,115-12,120.
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Welch, D.M.4
Huse, S.M.5
Neal, P.R.6
Arrieta, J.M.7
Herndl, G.J.8
-
31
-
-
0030023659
-
Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon
-
Stein, J.L., T.L. Marsh, K.Y. Wu, H. Shizuya, and E.F. DeLong. 1996. Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon. Journal of Bacteriology 178:591-599.
-
(1996)
Journal of Bacteriology
, vol.178
, pp. 591-599
-
-
Stein, J.L.1
Marsh, T.L.2
Wu, K.Y.3
Shizuya, H.4
DeLong, E.F.5
-
32
-
-
0002058563
-
Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand
-
Thingstad, T.F., and R. Lignell. 1997. Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand. Aquatic Microbial Ecology 13:19-27.
-
(1997)
Aquatic Microbial Ecology
, vol.13
, pp. 19-27
-
-
Thingstad, T.F.1
Lignell, R.2
-
33
-
-
33746106844
-
An analysis of the Sargasso Sea resource and the consequences for database composition
-
Tress, M.L., D. Cozzetto, A. Tramontano, and A. Valencia. 2006. An analysis of the Sargasso Sea resource and the consequences for database composition. BMC Bioinformatics 7:213.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 213
-
-
Tress, M.L.1
Cozzetto, D.2
Tramontano, A.3
Valencia, A.4
-
34
-
-
20244376755
-
Comparative metagenomics of microbial communities
-
Tringe, S.G., C. von Mering, A. Kobayashi, A.A. Salamov, K. Chen, H.W. Chang, M. Podar, J.M. Short, E.J. Mathur, J.C. Detter, P. Bork, P. Hugenholtz, and E.M. Rubin. 2005. Comparative metagenomics of microbial communities. Science 308:554-557.
-
(2005)
Science
, vol.308
, pp. 554-557
-
-
Tringe, S.G.1
von Mering, C.2
Kobayashi, A.3
Salamov, A.A.4
Chen, K.5
Chang, H.W.6
Podar, M.7
Short, J.M.8
Mathur, E.J.9
Detter, J.C.10
Bork, P.11
Hugenholtz, P.12
Rubin, E.M.13
-
35
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson, G.W., J. Chapman, P. Hugenholtz, E.E. Allen, R.J. Ram, P.M. Richardson, V.V. Solovyev, E.M. Rubin, D.S. Rokhsar, and J.F. Banfield. 2004. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428:37-43.
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
Richardson, P.M.6
Solovyev, V.V.7
Rubin, E.M.8
Rokhsar, D.S.9
Banfield, J.F.10
-
36
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter, J.C., K. Remington, J.F. Heidelberg, A.L. Halpern, D. Rusch, J.A. Eisen, D. Wu, I. Paulsen, K.E. Nelson, W. Nelson, and others. 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74.
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
Wu, D.7
Paulsen, I.8
Nelson, K.E.9
Nelson, W.10
-
37
-
-
0031927992
-
Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales
-
Vergin, K.L., E. Urbach, J.L. Stein, E.F. DeLong, B.D. Lanoil, and S.J. Giovannoni. 1998. Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales. Applied and Environmental Microbiology 64:3,075-3,078.
-
(1998)
Applied and Environmental Microbiology
, vol.64
, pp. 3075-3078
-
-
Vergin, K.L.1
Urbach, E.2
Stein, J.L.3
DeLong, E.F.4
Lanoil, B.D.5
Giovannoni, S.J.6
-
38
-
-
33947235074
-
The Sorcerer II Global Ocean Sampling expedition: Expanding the universe of protein families
-
Yooseph, S., G. Sutton, D.B. Rusch, A.L. Halpern, S.J. Williamson, K. Remington, J.A. Eisen, K.B. Heidelberg, G. Manning, W. Li, and others. 2007. The Sorcerer II Global Ocean Sampling expedition: Expanding the universe of protein families. PLoS Biology 5:e16.
-
(2007)
PLoS Biology
, vol.5
-
-
Yooseph, S.1
Sutton, G.2
Rusch, D.B.3
Halpern, A.L.4
Williamson, S.J.5
Remington, K.6
Eisen, J.A.7
Heidelberg, K.B.8
Manning, G.9
Li, W.10
|