-
1
-
-
34047111213
-
Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome
-
Albert I, Mavrich TN, Tomsho LP, Qi J, Zanton SJ, Schuster SC, Pugh BF (2007) Translational and rotational settings of H2A. Z nucleosomes across the Saccharomyces cerevisiae genome. Nature 446: 572-576.
-
(2007)
Nature
, vol.446
, pp. 572-576
-
-
Albert, I.1
Mavrich, T.N.2
Tomsho, L.P.3
Qi, J.4
Zanton, S.J.5
Schuster, S.C.6
Pugh, B.F.7
-
2
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The gene ontology consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (2000) Gene ontology: tool for the unification of biology. The gene ontology consortium. Nat Genet 25(1): 25.
-
(2000)
Nat Genet
, vol.25
, Issue.1
, pp. 25
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
3
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K (2007) High-resolution profiling of histone methylations in the human genome. Cell 129(4): 823-837.
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
4
-
-
69049111041
-
An integrative genomics approach identifies hypoxia inducible Factor-1 (HIF-1)-target genes that form the core response to hypoxia
-
Benita Y, Kikuchi H, Smith AD, Zhang MQ, Chung DC, Xavier RJ (2009) An integrative genomics approach identifies hypoxia inducible Factor-1 (HIF-1)-target genes that form the core response to hypoxia. Nucleic Acids Res 37(14): 4587-4602.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.14
, pp. 4587-4602
-
-
Benita, Y.1
Kikuchi, H.2
Smith, A.D.3
Zhang, M.Q.4
Chung, D.C.5
Xavier, R.J.6
-
5
-
-
0032581277
-
Role of HIF-1alpha in hypoxia-mediated apoptosis, cell proliferation and tumour angiogenesis
-
Carmeliet P, Dor Y, Herbert JM, Fukumura D, Brusselmans K, Dewerchin M, Neeman M, Bono F, Abramovitch R, Maxwell P, Koch CJ, Ratcliffe P, Moons L, Jain RK, Collen D, Keshert E (1998) Role of HIF-1alpha in hypoxia-mediated apoptosis, cell proliferation and tumour angiogenesis. Nature 394(6692): 485-490.
-
(1998)
Nature
, vol.394
, Issue.6692
, pp. 485-490
-
-
Carmeliet, P.1
Dor, Y.2
Herbert, J.M.3
Fukumura, D.4
Brusselmans, K.5
Dewerchin, M.6
Neeman, M.7
Bono, F.8
Abramovitch, R.9
Maxwell, P.10
Koch, C.J.11
Ratcliffe, P.12
Moons, L.13
Jain, R.K.14
Collen, D.15
Keshert, E.16
-
6
-
-
41149149041
-
The functional consequences of alternative promoter use in mammalian genomes
-
Davuluri RV, Suzuki Y, Sugano S, Plass C, Huang TH (2008) The functional consequences of alternative promoter use in mammalian genomes. Trends Genet 24(4): 167-177.
-
(2008)
Trends Genet
, vol.24
, Issue.4
, pp. 167-177
-
-
Davuluri, R.V.1
Suzuki, Y.2
Sugano, S.3
Plass, C.4
Huang, T.H.5
-
7
-
-
0029761644
-
Activation of vascular endothelial growth factor gene transcription by hypoxia-inducible factor 1
-
Forsythe JA, Jiang BH, Iyer NV, Agani F, Leung SW, Koos RD, Semenza GL (1996) Activation of vascular endothelial growth factor gene transcription by hypoxia-inducible factor 1. Mol Cell Biol 16(9): 4604-4613.
-
(1996)
Mol Cell Biol
, vol.16
, Issue.9
, pp. 4604-4613
-
-
Forsythe, J.A.1
Jiang, B.H.2
Iyer, N.V.3
Agani, F.4
Leung, S.W.5
Koos, R.D.6
Semenza, G.L.7
-
8
-
-
59349098621
-
Inhibition of oxygen sensors as a therapeutic strategy for ischaemic and inflammatory disease
-
Fraisl P, Aragones J, Carmeliet P (2009) Inhibition of oxygen sensors as a therapeutic strategy for ischaemic and inflammatory disease. Nat Rev Drug Discov 8(2): 139-152.
-
(2009)
Nat Rev Drug Discov
, vol.8
, Issue.2
, pp. 139-152
-
-
Fraisl, P.1
Aragones, J.2
Carmeliet, P.3
-
9
-
-
0031716020
-
Oxygenation predicts radiation response and survival in patients with cervix cancer
-
Fyles AW, Milosevic M, Wong R, Kavanagh MC, Pintilie M, Sun A, Chapman W, Levin W, Manchul L, Keane TJ, Hill RP (1998) Oxygenation predicts radiation response and survival in patients with cervix cancer. Radiother Oncol 48(2): 149-156.
-
(1998)
Radiother Oncol
, vol.48
, Issue.2
, pp. 149-156
-
-
Fyles, A.W.1
Milosevic, M.2
Wong, R.3
Kavanagh, M.C.4
Pintilie, M.5
Sun, A.6
Chapman, W.7
Levin, W.8
Manchul, L.9
Keane, T.J.10
Hill, R.P.11
-
10
-
-
8144228566
-
Why do cancers have high aerobic glycolysis?
-
Gatenby RA, Gillies RJ (2004) Why do cancers have high aerobic glycolysis? Nat Rev Cancer 4(11): 891-899.
-
(2004)
Nat Rev Cancer
, vol.4
, Issue.11
, pp. 891-899
-
-
Gatenby, R.A.1
Gillies, R.J.2
-
11
-
-
7444262496
-
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)
-
Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G, Klein SL, Old S, Rasooly R, Good P, Guyer M, Peck AM, Derge JG, Lipman D, Collins FS, Jang W, Sherry S, Feolo M, Misquitta L, Lee E, Rotmistrovsky K, Greenhut SF, Schaefer CF, Buetow K, Bonner TI, Haussler D, Kent J, Kiekhaus M, Furey T, Brent M, Prange C, Schreiber K, Shapiro N, Bhat NK, Hopkins RF, Hsie F, Driscoll T, Soares MB, Casavant TL, Scheetz TE, Brown-stein MJ, Usdin TB, Toshiyuki S, Carninci P, Piao Y, Dudekula DB, Ko MS, Kawakami K, Suzuki Y, Sugano S, Gruber CE, Smith MR, Simmons B, Moore T, Waterman R, Johnson SL, Ruan Y, Wei CL, Mathavan S, Gunaratne PH, Wu J, Garcia AM, Hulyk SW, Fuh E, Yuan Y, Sneed A, Kowis C, Hodgson A, Muzny DM, McPherson J, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madari A, Young AC, Wetherby KD, Granite SJ, Kwong PN, Brinkley CP, Pearson RL, Bouffard GG, Blakesly RW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Griffith M, Griffith OL, Krzywinski MI, Liao N, Morin R, Palmquist D, Petrescu AS, Skalska U, Smailus DE, Stott JM, Schnerch A, Schein JE, Jones SJ, Holt RA, Baross A, Marra MA, Clifton S, Makowski KA, Bosak S, Malek J (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Res 14(10B): 2121-2127.
-
(2004)
Genome Res
, vol.14
, Issue.10 B
, pp. 2121-2127
-
-
Gerhard, D.S.1
Wagner, L.2
Feingold, E.A.3
Shenmen, C.M.4
Grouse, L.H.5
Schuler, G.6
Klein, S.L.7
Old, S.8
Rasooly, R.9
Good, P.10
Guyer, M.11
Peck, A.M.12
Derge, J.G.13
Lipman, D.14
Collins, F.S.15
Jang, W.16
Sherry, S.17
Feolo, M.18
Misquitta, L.19
Lee, E.20
Rotmistrovsky, K.21
Greenhut, S.F.22
Schaefer, C.F.23
Buetow, K.24
Bonner, T.I.25
Haussler, D.26
Kent, J.27
Kiekhaus, M.28
Furey, T.29
Brent, M.30
Prange, C.31
Schreiber, K.32
Shapiro, N.33
Bhat, N.K.34
Hopkins, R.F.35
Hsie, F.36
Driscoll, T.37
Soares, M.B.38
Casavant, T.L.39
Scheetz, T.E.40
Brown-stein, M.J.41
Usdin, T.B.42
Toshiyuki, S.43
Carninci, P.44
Piao, Y.45
Dudekula, D.B.46
Ko, M.S.47
Kawakami, K.48
Suzuki, Y.49
Sugano, S.50
Gruber, C.E.51
Smith, M.R.52
Simmons, B.53
Moore, T.54
Waterman, R.55
Johnson, S.L.56
Ruan, Y.57
Wei, C.L.58
Mathavan, S.59
Gunaratne, P.H.60
Wu, J.61
Garcia, A.M.62
Hulyk, S.W.63
Fuh, E.64
Yuan, Y.65
Sneed, A.66
Kowis, C.67
Hodgson, A.68
Muzny, D.M.69
McPherson, J.70
Gibbs, R.A.71
Fahey, J.72
Helton, E.73
Ketteman, M.74
Madan, A.75
Rodrigues, S.76
Sanchez, A.77
Whiting, M.78
Madari, A.79
Young, A.C.80
Wetherby, K.D.81
Granite, S.J.82
Kwong, P.N.83
Brinkley, C.P.84
Pearson, R.L.85
Bouffard, G.G.86
Blakesly, R.W.87
Green, E.D.88
Dickson, M.C.89
Rodriguez, A.C.90
Grimwood, J.91
Schmutz, J.92
Myers, R.M.93
Butterfield, Y.S.94
Griffith, M.95
Griffith, O.L.96
Krzywinski, M.I.97
Liao, N.98
Morin, R.99
more..
-
12
-
-
33644750115
-
miRBase: microRNA sequences, targets and gene nomenclature
-
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ (2006) miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res 34(Database issue): D140-D144.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.Database issue
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
van Dongen, S.3
Bateman, A.4
Enright, A.J.5
-
13
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman M, Amit I, Garber M, French C, Lin MF, Feldser D, Huarte M, Zuk O, Carey BW, Cassady JP, Cabili MN, Jaenisch R, Mikkelsen TS, Jacks T, Hacohen N, Bernstein BE, Kellis M, Regev A, Rinn JL, Lander ES (2009) Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 458(7235): 223-227.
-
(2009)
Nature
, vol.458
, Issue.7235
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
Feldser, D.6
Huarte, M.7
Zuk, O.8
Carey, B.W.9
Cassady, J.P.10
Cabili, M.N.11
Jaenisch, R.12
Mikkelsen, T.S.13
Jacks, T.14
Hacohen, N.15
Bernstein, B.E.16
Kellis, M.17
Regev, A.18
Rinn, J.L.19
Lander, E.S.20
more..
-
14
-
-
0036359548
-
Hypoxia-a key regulatory factor in tumour growth
-
Harris AL (2002) Hypoxia-a key regulatory factor in tumour growth. Nat Rev Cancer 2(1): 38-47.
-
(2002)
Nat Rev Cancer
, vol.2
, Issue.1
, pp. 38-47
-
-
Harris, A.L.1
-
15
-
-
3042767202
-
MicroRNAs: small RNAs with a big role in gene regulation
-
He L, Hannon GJ (2004) MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet 5(7): 522-531.
-
(2004)
Nat Rev Genet
, vol.5
, Issue.7
, pp. 522-531
-
-
He, L.1
Hannon, G.J.2
-
16
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
Heintzman ND, Stuart RK, Hon G, Fu Y, Ching CW, Hawkins RD, Barrera LO, van Calcar S, Qu C, Ching KA, Wang W, Weng Z, Green RD, Crawford GE, Ren B (2007) Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat Genet 39(3): 311-318.
-
(2007)
Nat Genet
, vol.39
, Issue.3
, pp. 311-318
-
-
Heintzman, N.D.1
Stuart, R.K.2
Hon, G.3
Fu, Y.4
Ching, C.W.5
Hawkins, R.D.6
Barrera, L.O.7
van Calcar, S.8
Qu, C.9
Ching, K.A.10
Wang, W.11
Weng, Z.12
Green, R.D.13
Crawford, G.E.14
Ren, B.15
-
17
-
-
33745138232
-
Regulation of angiogenesis by hypoxia-inducible factor 1
-
Hirota K, Semenza GL (2006) Regulation of angiogenesis by hypoxia-inducible factor 1. Crit Rev Oncol Hematol 59(1): 15-26.
-
(2006)
Crit Rev Oncol Hematol
, vol.59
, Issue.1
, pp. 15-26
-
-
Hirota, K.1
Semenza, G.L.2
-
18
-
-
60349089645
-
Nucleosome positioning and gene regulation: advances through genomics
-
Jiang C, Pugh BF (2009) Nucleosome positioning and gene regulation: advances through genomics. Nat Rev Genet 10(3): 161-172.
-
(2009)
Nat Rev Genet
, vol.10
, Issue.3
, pp. 161-172
-
-
Jiang, C.1
Pugh, B.F.2
-
19
-
-
34247527730
-
Hypoxia-inducible factors, stem cells, and cancer
-
Keith B, Simon MC (2007) Hypoxia-inducible factors, stem cells, and cancer. Cell 129(3): 465-472.
-
(2007)
Cell
, vol.129
, Issue.3
, pp. 465-472
-
-
Keith, B.1
Simon, M.C.2
-
20
-
-
40749104852
-
An extended transcriptional network for pluripotency of embryonic stem cells
-
Kim J, Chu J, Shen X, Wang J, Orkin SH (2008) An extended transcriptional network for pluripotency of embryonic stem cells. Cell 132(6): 1049-1061.
-
(2008)
Cell
, vol.132
, Issue.6
, pp. 1049-1061
-
-
Kim, J.1
Chu, J.2
Shen, X.3
Wang, J.4
Orkin, S.H.5
-
21
-
-
39749116239
-
Hypoxia and regulation of messenger RNA translation
-
Koritzinsky M, Wouters BG (2007) Hypoxia and regulation of messenger RNA translation. Methods Enzymol 435: 247-273.
-
(2007)
Methods Enzymol
, vol.435
, pp. 247-273
-
-
Koritzinsky, M.1
Wouters, B.G.2
-
22
-
-
71749089605
-
Analysis of interleukin-21-induced Prdm1 gene regulation reveals functional cooperation of STAT3 and IRF4 transcription factors
-
Kwon H, Thierry-Mieg D, Thierry-Mieg J, Kim HP, Oh J, Tunyaplin C, Carotta S, Donovan CE, Goldman ML, Tailor P, Ozato K, Levy DE, Nutt SL, Calame K, Leonard WJ (2009) Analysis of interleukin-21-induced Prdm1 gene regulation reveals functional cooperation of STAT3 and IRF4 transcription factors. Immunity 31(6): 941-952.
-
(2009)
Immunity
, vol.31
, Issue.6
, pp. 941-952
-
-
Kwon, H.1
Thierry-Mieg, D.2
Thierry-Mieg, J.3
Kim, H.P.4
Oh, J.5
Tunyaplin, C.6
Carotta, S.7
Donovan, C.E.8
Goldman, M.L.9
Tailor, P.10
Ozato, K.11
Levy, D.E.12
Nutt, S.L.13
Calame, K.14
Leonard, W.J.15
-
23
-
-
0242317345
-
Complex controls: the role of alternative promoters in mammalian genomes
-
Landry JR, Mager DL, Wilhelm BT (2003) Complex controls: the role of alternative promoters in mammalian genomes. Trends Genet 19(11): 640-648.
-
(2003)
Trends Genet
, vol.19
, Issue.11
, pp. 640-648
-
-
Landry, J.R.1
Mager, D.L.2
Wilhelm, B.T.3
-
24
-
-
68749084845
-
Integrated expression profiling and ChIP-seq analyses of the growth inhibition response program of the androgen receptor
-
Lin B, Wang J, Hong X, Yan X, Hwang D, Cho JH, Yi D, Utleg AG, Fang X, Schones DE, Zhao K, Omenn GS, Hood L (2009) Integrated expression profiling and ChIP-seq analyses of the growth inhibition response program of the androgen receptor. PLoS One 4(8): e6589.
-
(2009)
PLoS One
, vol.4
, Issue.8
-
-
Lin, B.1
Wang, J.2
Hong, X.3
Yan, X.4
Hwang, D.5
Cho, J.H.6
Yi, D.7
Utleg, A.G.8
Fang, X.9
Schones, D.E.10
Zhao, K.11
Omenn, G.S.12
Hood, L.13
-
25
-
-
24344488419
-
The HIF pathway in cancer
-
Maxwell PH (2005) The HIF pathway in cancer. Semin Cell Dev Biol 16(4-5): 523-530.
-
(2005)
Semin Cell Dev Biol
, vol.16
, Issue.4-5
, pp. 523-530
-
-
Maxwell, P.H.1
-
26
-
-
67650531089
-
Genome-wide association of hypoxia-inducible factor (HIF)-1alpha and HIF-2alpha DNA binding with expression profiling of hypoxia-inducible transcripts
-
Mole DR, Blancher C, Copley RR, Pollard PJ, Gleadle JM, Ragoussis J, Ratcliffe PJ (2009) Genome-wide association of hypoxia-inducible factor (HIF)-1alpha and HIF-2alpha DNA binding with expression profiling of hypoxia-inducible transcripts. J Biol Chem 284(25): 16767-16775.
-
(2009)
J Biol Chem
, vol.284
, Issue.25
, pp. 16767-16775
-
-
Mole, D.R.1
Blancher, C.2
Copley, R.R.3
Pollard, P.J.4
Gleadle, J.M.5
Ragoussis, J.6
Ratcliffe, P.J.7
-
27
-
-
2942709631
-
Hypoxia-inducible factor 1 mediates upregulation of telomerase (hTERT)
-
Nishi H, Nakada T, Kyo S, Inoue M, Shay JW, Isaka K (2004) Hypoxia-inducible factor 1 mediates upregulation of telomerase (hTERT). Mol Cell Biol 24(13): 6076-6083.
-
(2004)
Mol Cell Biol
, vol.24
, Issue.13
, pp. 6076-6083
-
-
Nishi, H.1
Nakada, T.2
Kyo, S.3
Inoue, M.4
Shay, J.W.5
Isaka, K.6
-
28
-
-
0029955072
-
Pretreatment oxygenation predicts radiation response in advanced squamous cell carcinoma of the head and neck
-
Nordsmark M, Overgaard M, Overgaard J (1996) Pretreatment oxygenation predicts radiation response in advanced squamous cell carcinoma of the head and neck. Radiother Oncol 41(1): 31-39.
-
(1996)
Radiother Oncol
, vol.41
, Issue.1
, pp. 31-39
-
-
Nordsmark, M.1
Overgaard, M.2
Overgaard, J.3
-
29
-
-
77952300971
-
Genome-wide identification of hypoxia-inducible factor binding sites and target genes by a probabilistic model integrating transcription-profiling data and in silico binding site prediction
-
Ortiz-Barahona A, Villar D, Pescador N, Amigo J, del Peso L (2010) Genome-wide identification of hypoxia-inducible factor binding sites and target genes by a probabilistic model integrating transcription-profiling data and in silico binding site prediction. Nucleic Acids Res 38(7): 2332-2345.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.7
, pp. 2332-2345
-
-
Ortiz-Barahona, A.1
Villar, D.2
Pescador, N.3
Amigo, J.4
Del Peso, L.5
-
30
-
-
9144252038
-
Complete sequencing and characterization of 21, 243 full-length human cDNAs
-
Ota T, Suzuki Y, Nishikawa T, Otsuki T, Sugiyama T, Irie R, Wakamatsu A, Hayashi K, Sato H, Nagai K, Kimura K, Makita H, Sekine M, Obayashi M, Nishi T, Shibahara T, Tanaka T, Ishii S, Yamamoto J, Saito K, Kawai Y, Isono Y, Nakamura Y, Nagahari K, Murakami K, Yasuda T, Iwayanagi T, Wagatsuma M, Shiratori A, Sudo H, Hosoiri T, Kaku Y, Kodaira H, Kondo H, Sugawara M, Takahashi M, Kanda K, Yokoi T, Furuya T, Kikkawa E, Omura Y, Abe K, Kamihara K, Katsuta N, Sato K, Tanikawa M, Yamazaki M, Ninomiya K, Ishibashi T, Yamashita H, Murakawa K, Fujimori K, Tanai H, Kimata M, Watanabe M, Hiraoka S, Chiba Y, Ishida S, Ono Y, Takiguchi S, Watanabe S, Yosida M, Hotuta T, Kusano J, Kanehori K, Takahashi-Fujii A, Hara H, Tanase TO, Nomura Y, Togiya S, Komai F, Hara R, Takeuchi K, Arita M, Imose N, Musashino K, Yuuki H, Oshima A, Sasaki N, Aotsuka S, Yoshikawa Y, Matsunawa H, Ichihara T, Shiohata N, Sano S, Moriya S, Momiyama H, Satoh N, Takami S, Terashima Y, Suzuki O, Nakagawa S, Senoh A, Mizoguchi H, Goto Y, Shimizu F, Wakebe H, Hishigaki H, Watanabe T, Sugiyama A, Takemoto M, Kawakami B, Yamazaki M, Watanabe K, Kumagai A, Itakura S, Fukuzumi Y, Fujimori Y, Komiyama M, Tashiro H, Tanigami A, Fujiwara T, Ono T, Yamada K, Fujii Y, Ozaki K, Hirao M, Ohmori Y, Kawabata A, Hikiji T, Kobatake N, Inagaki H, Ikema Y, Okamoto S, Okitani R, Kawakami T, Noguchi S, Itoh T, Shigeta K, Senba T, Matsumura K, Nakajima Y, Mizuno T, Morinaga M, Sasaki M, Togashi T, Oyama M, Hata H, Watanabe M, Komatsu T, Mizushima-Sugano J, Satoh T, Shirai Y, Takahashi Y, Nakagawa K, Okumura K, Nagase T, Nomura N, Kikuchi H, Masuho Y, Yamashita R, Nakai K, Yada T, Nakamura Y, Ohara O, Isogai T, Sugano S (2004) Complete sequencing and characterization of 21, 243 full-length human cDNAs. Nat Genet 36(1): 40-45.
-
(2004)
Nat Genet
, vol.36
, Issue.1
, pp. 40-45
-
-
Ota, T.1
Suzuki, Y.2
Nishikawa, T.3
Otsuki, T.4
Sugiyama, T.5
Irie, R.6
Wakamatsu, A.7
Hayashi, K.8
Sato, H.9
Nagai, K.10
Kimura, K.11
Makita, H.12
Sekine, M.13
Obayashi, M.14
Nishi, T.15
Shibahara, T.16
Tanaka, T.17
Ishii, S.18
Yamamoto, J.19
Saito, K.20
Kawai, Y.21
Isono, Y.22
Nakamura, Y.23
Nagahari, K.24
Murakami, K.25
Yasuda, T.26
Iwayanagi, T.27
Wagatsuma, M.28
Shiratori, A.29
Sudo, H.30
Hosoiri, T.31
Kaku, Y.32
Kodaira, H.33
Kondo, H.34
Sugawara, M.35
Takahashi, M.36
Kanda, K.37
Yokoi, T.38
Furuya, T.39
Kikkawa, E.40
Omura, Y.41
Abe, K.42
Kamihara, K.43
Katsuta, N.44
Sato, K.45
Tanikawa, M.46
Yamazaki, M.47
Ninomiya, K.48
Ishibashi, T.49
Yamashita, H.50
Murakawa, K.51
Fujimori, K.52
Tanai, H.53
Kimata, M.54
Watanabe, M.55
Hiraoka, S.56
Chiba, Y.57
Ishida, S.58
Ono, Y.59
Takiguchi, S.60
Watanabe, S.61
Yosida, M.62
Hotuta, T.63
Kusano, J.64
Kanehori, K.65
Takahashi-Fujii, A.66
Hara, H.67
Tanase, T.O.68
Nomura, Y.69
Togiya, S.70
Komai, F.71
Hara, R.72
Takeuchi, K.73
Arita, M.74
Imose, N.75
Musashino, K.76
Yuuki, H.77
Oshima, A.78
Sasaki, N.79
Aotsuka, S.80
Yoshikawa, Y.81
Matsunawa, H.82
Ichihara, T.83
Shiohata, N.84
Sano, S.85
Moriya, S.86
Momiyama, H.87
Satoh, N.88
Takami, S.89
Terashima, Y.90
Suzuki, O.91
Nakagawa, S.92
Senoh, A.93
Mizoguchi, H.94
Goto, Y.95
Shimizu, F.96
Wakebe, H.97
Hishigaki, H.98
Watanabe, T.99
more..
-
31
-
-
70349312354
-
ChIP-seq: advantages and challenges of a maturing technology
-
Park PJ (2009) ChIP-seq: advantages and challenges of a maturing technology. Nat Rev Genet 10(10): 669-680.
-
(2009)
Nat Rev Genet
, vol.10
, Issue.10
, pp. 669-680
-
-
Park, P.J.1
-
32
-
-
33746377600
-
Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes
-
Polak P, Domany E (2006) Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes. BMC Genomics 7: 133.
-
(2006)
BMC Genomics
, vol.7
, pp. 133
-
-
Polak, P.1
Domany, E.2
-
33
-
-
70350452792
-
Targeting the hypoxia-inducible factor (HIF) pathway in cancer
-
Poon E, Harris AL, Ashcroft M (2009) Targeting the hypoxia-inducible factor (HIF) pathway in cancer. Expert Rev Mol Med 11: e26.
-
(2009)
Expert Rev Mol Med
, vol.11
-
-
Poon, E.1
Harris, A.L.2
Ashcroft, M.3
-
34
-
-
33745303045
-
Hypoxia signalling in cancer and approaches to enforce tumour regression
-
Pouyssegur J, Dayan F, Mazure NM (2006) Hypoxia signalling in cancer and approaches to enforce tumour regression. Nature 441(7092): 437-443.
-
(2006)
Nature
, vol.441
, Issue.7092
, pp. 437-443
-
-
Pouyssegur, J.1
Dayan, F.2
Mazure, N.M.3
-
35
-
-
70449122565
-
Expression patterns of hypoxic markers at the invasive margin of colorectal cancers and liver metastases
-
Rajaganeshan R, Prasad R, Guillou PJ, Scott N, Poston G, Jayne DG (2009) Expression patterns of hypoxic markers at the invasive margin of colorectal cancers and liver metastases. Eur J Surg Oncol 35(12): 1286-1294.
-
(2009)
Eur J Surg Oncol
, vol.35
, Issue.12
, pp. 1286-1294
-
-
Rajaganeshan, R.1
Prasad, R.2
Guillou, P.J.3
Scott, N.4
Poston, G.5
Jayne, D.G.6
-
36
-
-
20744445650
-
Contrasting properties of hypoxia-inducible factor 1 (HIF-1) and HIF-2 in von Hippel-Lindau-associated renal cell carcinoma
-
Raval RR, Lau KW, Tran MG, Sowter HM, Mandriota SJ, Li JL, Pugh CW, Maxwell PH, Harris AL, Ratcliffe PJ (2005) Contrasting properties of hypoxia-inducible factor 1 (HIF-1) and HIF-2 in von Hippel-Lindau-associated renal cell carcinoma. Mol Cell Biol 25(13): 5675-5686.
-
(2005)
Mol Cell Biol
, vol.25
, Issue.13
, pp. 5675-5686
-
-
Raval, R.R.1
Lau, K.W.2
Tran, M.G.3
Sowter, H.M.4
Mandriota, S.J.5
Li, J.L.6
Pugh, C.W.7
Maxwell, P.H.8
Harris, A.L.9
Ratcliffe, P.J.10
-
37
-
-
34547633677
-
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing
-
Robertson G, Hirst M, Bainbridge M, Bilenky M, Zhao Y, Zeng T, Euskirchen G, Bernier B, Varhol R, Delaney A, Thiessen N, Griffith OL, He A, Marra M, Snyder M, Jones S (2007) Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. Nat Methods 4(8): 651-657.
-
(2007)
Nat Methods
, vol.4
, Issue.8
, pp. 651-657
-
-
Robertson, G.1
Hirst, M.2
Bainbridge, M.3
Bilenky, M.4
Zhao, Y.5
Zeng, T.6
Euskirchen, G.7
Bernier, B.8
Varhol, R.9
Delaney, A.10
Thiessen, N.11
Griffith, O.L.12
He, A.13
Marra, M.14
Snyder, M.15
Jones, S.16
-
38
-
-
70350020416
-
Combined analysis of hypoxia-inducible factor 1 alpha and metallothionein indicates an aggressive subtype of colorectal carcinoma
-
Schmitz KJ, Muller CI, Reis H, Alakus H, Winde G, Baba HA, Wohlschlaeger J, Jasani B, Fandrey J, Schmid KW (2009) Combined analysis of hypoxia-inducible factor 1 alpha and metallothionein indicates an aggressive subtype of colorectal carcinoma. Int J Colorectal Dis 24(11): 1287-1296.
-
(2009)
Int J Colorectal Dis
, vol.24
, Issue.11
, pp. 1287-1296
-
-
Schmitz, K.J.1
Muller, C.I.2
Reis, H.3
Alakus, H.4
Winde, G.5
Baba, H.A.6
Wohlschlaeger, J.7
Jasani, B.8
Fandrey, J.9
Schmid, K.W.10
-
39
-
-
39749145198
-
Dynamic regulation of nucleosome positioning in the human genome
-
Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, Wang Z, Wei G, Zhao K (2008) Dynamic regulation of nucleosome positioning in the human genome. Cell 132(5): 887-898.
-
(2008)
Cell
, vol.132
, Issue.5
, pp. 887-898
-
-
Schones, D.E.1
Cui, K.2
Cuddapah, S.3
Roh, T.Y.4
Barski, A.5
Wang, Z.6
Wei, G.7
Zhao, K.8
-
40
-
-
0034663989
-
HIF-1 and human disease: one highly involved factor
-
Semenza GL (2000) HIF-1 and human disease: one highly involved factor. Genes Dev 14(16): 1983-1991.
-
(2000)
Genes Dev
, vol.14
, Issue.16
, pp. 1983-1991
-
-
Semenza, G.L.1
-
41
-
-
0142166332
-
Targeting HIF-1 for cancer therapy
-
Semenza GL (2003) Targeting HIF-1 for cancer therapy. Nat Rev Cancer 3(10): 721-732.
-
(2003)
Nat Rev Cancer
, vol.3
, Issue.10
, pp. 721-732
-
-
Semenza, G.L.1
-
42
-
-
76349095132
-
Defining the role of hypoxia-inducible factor 1 in cancer biology and therapeutics
-
Semenza GL (2010) Defining the role of hypoxia-inducible factor 1 in cancer biology and therapeutics. Oncogene 29(5): 625-634.
-
(2010)
Oncogene
, vol.29
, Issue.5
, pp. 625-634
-
-
Semenza, G.L.1
-
43
-
-
0026468180
-
A nuclear factor induced by hypoxia via de novo protein synthesis binds to the human erythropoietin gene enhancer at a site required for transcriptional activation
-
Semenza GL, Wang GL (1992) A nuclear factor induced by hypoxia via de novo protein synthesis binds to the human erythropoietin gene enhancer at a site required for transcriptional activation. Mol Cell Biol 12(12): 5447-5454.
-
(1992)
Mol Cell Biol
, vol.12
, Issue.12
, pp. 5447-5454
-
-
Semenza, G.L.1
Wang, G.L.2
-
44
-
-
34250812108
-
Identification of mRNAs that continue to associate with polysomes during hypoxia
-
Thomas JD, Johannes GJ (2007) Identification of mRNAs that continue to associate with polysomes during hypoxia. Rna 13(7): 1116-1131.
-
(2007)
Rna
, vol.13
, Issue.7
, pp. 1116-1131
-
-
Thomas, J.D.1
Johannes, G.J.2
-
45
-
-
0031020884
-
Endothelial PAS domain protein 1 (EPAS1), a transcription factor selectively expressed in endothelial cells
-
Tian H, McKnight SL, Russell DW (1997) Endothelial PAS domain protein 1 (EPAS1), a transcription factor selectively expressed in endothelial cells. Genes Dev 11(1): 72-82.
-
(1997)
Genes Dev
, vol.11
, Issue.1
, pp. 72-82
-
-
Tian, H.1
McKnight, S.L.2
Russell, D.W.3
-
46
-
-
41649088383
-
Regulation of mammalian gene expression by retroelements and non-coding tandem repeats
-
Tomilin NV (2008) Regulation of mammalian gene expression by retroelements and non-coding tandem repeats. Bioessays 30(4): 338-348.
-
(2008)
Bioessays
, vol.30
, Issue.4
, pp. 338-348
-
-
Tomilin, N.V.1
-
47
-
-
65549105550
-
Massive transcriptional start site analysis of human genes in hypoxia cells
-
Tsuchihara K, Suzuki Y, Wakaguri H, Irie T, Tanimoto K, Hashimoto S, Matsushima K, Mizushima-Sugano J, Yamashita R, Nakai K, Bentley D, Esumi H, Sugano S (2009) Massive transcriptional start site analysis of human genes in hypoxia cells. Nucleic Acids Res 37(7): 2249-2263.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.7
, pp. 2249-2263
-
-
Tsuchihara, K.1
Suzuki, Y.2
Wakaguri, H.3
Irie, T.4
Tanimoto, K.5
Hashimoto, S.6
Matsushima, K.7
Mizushima-Sugano, J.8
Yamashita, R.9
Nakai, K.10
Bentley, D.11
Esumi, H.12
Sugano, S.13
-
48
-
-
50849090969
-
Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data
-
Valouev A, Johnson DS, Sundquist A, Medina C, Anton E, Batzoglou S, Myers RM, Sidow A (2008) Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data. Nat Methods 5(9): 829-834.
-
(2008)
Nat Methods
, vol.5
, Issue.9
, pp. 829-834
-
-
Valouev, A.1
Johnson, D.S.2
Sundquist, A.3
Medina, C.4
Anton, E.5
Batzoglou, S.6
Myers, R.M.7
Sidow, A.8
-
49
-
-
0028816847
-
Purification and characterization of hypoxia-inducible factor 1
-
Wang GL, Semenza GL (1995) Purification and characterization of hypoxia-inducible factor 1. J Biol Chem 270(3): 1230-1237.
-
(1995)
J Biol Chem
, vol.270
, Issue.3
, pp. 1230-1237
-
-
Wang, G.L.1
Semenza, G.L.2
-
50
-
-
66549085342
-
ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands
-
Welboren WJ, van Driel MA, Janssen-Megens EM, van Heeringen SJ, Sweep FC, Span PN, Stunnenberg HG (2009) ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands. EMBO J 28(10): 1418-1428.
-
(2009)
EMBO J
, vol.28
, Issue.10
, pp. 1418-1428
-
-
Welboren, W.J.1
van Driel, M.A.2
Janssen-Megens, E.M.3
van Heeringen, S.J.4
Sweep, F.C.5
Span, P.N.6
Stunnenberg, H.G.7
-
51
-
-
0032079558
-
Oxygen-regulated erythropoietin gene expression is dependent on a CpG methylation-free hypoxia-inducible factor-1 DNA-binding site
-
Wenger RH, Kvietikova I, Rolfs A, Camenisch G, Gassmann M (1998) Oxygen-regulated erythropoietin gene expression is dependent on a CpG methylation-free hypoxia-inducible factor-1 DNA-binding site. Eur J Biochem 253(3): 771-777.
-
(1998)
Eur J Biochem
, vol.253
, Issue.3
, pp. 771-777
-
-
Wenger, R.H.1
Kvietikova, I.2
Rolfs, A.3
Camenisch, G.4
Gassmann, M.5
-
52
-
-
31444444162
-
Integration of oxygen signaling at the consensus HRE
-
re12
-
Wenger RH, Stiehl DP, Camenisch G (2005) Integration of oxygen signaling at the consensus HRE. Sci STKE (306): re12.
-
(2005)
Sci STKE
, Issue.306
-
-
Wenger, R.H.1
Stiehl, D.P.2
Camenisch, G.3
-
53
-
-
0037315337
-
Widespread hypoxia-inducible expression of HIF-2alpha in distinct cell populations of different organs
-
Wiesener MS, Jurgensen JS, Rosenberger C, Scholze CK, Horstrup JH, Warnecke C, Mandriota S, Bechmann I, Frei UA, Pugh CW, Ratcliffe PJ, Bachmann S, Maxwell PH, Eckardt KU (2003) Widespread hypoxia-inducible expression of HIF-2alpha in distinct cell populations of different organs. Faseb J 17(2): 271-273.
-
(2003)
Faseb J
, vol.17
, Issue.2
, pp. 271-273
-
-
Wiesener, M.S.1
Jurgensen, J.S.2
Rosenberger, C.3
Scholze, C.K.4
Horstrup, J.H.5
Warnecke, C.6
Mandriota, S.7
Bechmann, I.8
Frei, U.A.9
Pugh, C.W.10
Ratcliffe, P.J.11
Bachmann, S.12
Maxwell, P.H.13
Eckardt, K.U.14
-
54
-
-
67649671961
-
Long noncoding RNAs: functional surprises from the RNA world
-
Wilusz JE, Sunwoo H, Spector DL (2009) Long noncoding RNAs: functional surprises from the RNA world. Genes Dev 23(13): 1494-1504.
-
(2009)
Genes Dev
, vol.23
, Issue.13
, pp. 1494-1504
-
-
Wilusz, J.E.1
Sunwoo, H.2
Spector, D.L.3
-
55
-
-
75349114759
-
Preferential binding of HIF-1 to transcriptionally active loci determines cell-type specific response to hypoxia
-
Xia X, Kung AL (2009) Preferential binding of HIF-1 to transcriptionally active loci determines cell-type specific response to hypoxia. Genome Biol 10(10): R113.
-
(2009)
Genome Biol
, vol.10
, Issue.10
-
-
Xia, X.1
Kung, A.L.2
-
56
-
-
63449103705
-
Integrative analysis of HIF binding and transactivation reveals its role in maintaining histone methylation homeostasis
-
Xia X, Lemieux ME, Li W, Carroll JS, Brown M, Liu XS, Kung AL (2009) Integrative analysis of HIF binding and transactivation reveals its role in maintaining histone methylation homeostasis. Proc Natl Acad Sci U S A 106(11): 4260-4265.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, Issue.11
, pp. 4260-4265
-
-
Xia, X.1
Lemieux, M.E.2
Li, W.3
Carroll, J.S.4
Brown, M.5
Liu, X.S.6
Kung, A.L.7
-
57
-
-
68249142923
-
Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo
-
Zhang Y, Moqtaderi Z, Rattner BP, Euskirchen G, Snyder M, Kadonaga JT, Liu XS, Struhl K (2009) Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo. Nat Struct Mol Biol 16(8): 847-852.
-
(2009)
Nat Struct Mol Biol
, vol.16
, Issue.8
, pp. 847-852
-
-
Zhang, Y.1
Moqtaderi, Z.2
Rattner, B.P.3
Euskirchen, G.4
Snyder, M.5
Kadonaga, J.T.6
Liu, X.S.7
Struhl, K.8
|