-
1
-
-
0000642462
-
Induction of Instability at Selected Loci in Maize
-
McClintock B. 1953. Induction of Instability at Selected Loci in Maize. Genetics 38:579-599.
-
(1953)
Genetics
, vol.38
, pp. 579-599
-
-
McClintock, B.1
-
2
-
-
0014690698
-
Gene regulation for higher cells: A theory
-
Britten RJ, Davidson EH. 1969. Gene regulation for higher cells: a theory. Science 165:349-357.
-
(1969)
Science
, vol.165
, pp. 349-357
-
-
Britten, R.J.1
Davidson, E.H.2
-
3
-
-
0018894384
-
Selfish genes, the phenotype paradigm and genome evolution
-
Doolittle WF, Sapienza C. 1980. Selfish genes, the phenotype paradigm and genome evolution. Nature 284:601-603.
-
(1980)
Nature
, vol.284
, pp. 601-603
-
-
Doolittle, W.F.1
Sapienza, C.2
-
4
-
-
0018857680
-
Selfish DNA: The ultimate parasite
-
Orgel LE, Crick FH. 1980. Selfish DNA: the ultimate parasite. Nature 284:604-607.
-
(1980)
Nature
, vol.284
, pp. 604-607
-
-
Orgel, L.E.1
Crick, F.H.2
-
5
-
-
0027012819
-
Retrotransposons and the evolution of mammalian gene expression
-
Robins DM, Samuelson LC. 1992. Retrotransposons and the evolution of mammalian gene expression. Genetica 86:191-201.
-
(1992)
Genetica
, vol.86
, pp. 191-201
-
-
Robins, D.M.1
Samuelson, L.C.2
-
6
-
-
0031593249
-
Mobile elements inserted in the distant past have taken on important functions
-
Britten RJ. 1997. Mobile elements inserted in the distant past have taken on important functions. Gene 205:177-182.
-
(1997)
Gene
, vol.205
, pp. 177-182
-
-
Britten, R.J.1
-
7
-
-
0031752829
-
Control of genes by mammalian retroposons
-
Tomilin NV. 1999. Control of genes by mammalian retroposons. Int Rev Cytol 186:1-48.
-
(1999)
Int Rev Cytol
, vol.186
, pp. 1-48
-
-
Tomilin, N.V.1
-
8
-
-
0033289533
-
Genomes were forged by massive bombardments with retroelements and retrosequences
-
Brosius J. 1999. Genomes were forged by massive bombardments with retroelements and retrosequences. Genetica 107:209-238.
-
(1999)
Genetica
, vol.107
, pp. 209-238
-
-
Brosius, J.1
-
9
-
-
0037301560
-
Origin of a substantial fraction of human regulatory sequences from transposable elements
-
Jordan IK, Rogozin IB, Glazko GV, Koonin EV. 2003. Origin of a substantial fraction of human regulatory sequences from transposable elements. Trends Genet 19:68-72.
-
(2003)
Trends Genet
, vol.19
, pp. 68-72
-
-
Jordan, I.K.1
Rogozin, I.B.2
Glazko, G.V.3
Koonin, E.V.4
-
10
-
-
0141561907
-
Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions
-
van de Lagemaat LN, Landry JR, Mager DL, Medstrand P. 2003. Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions. Trends Genet 19: 530-536.
-
(2003)
Trends Genet
, vol.19
, pp. 530-536
-
-
van de Lagemaat, L.N.1
Landry, J.R.2
Mager, D.L.3
Medstrand, P.4
-
11
-
-
0033964662
-
Retroviruses and primate evolution
-
Sverdlov ED. 2000. Retroviruses and primate evolution. BioEssays 22: 161-171.
-
(2000)
BioEssays
, vol.22
, pp. 161-171
-
-
Sverdlov, E.D.1
-
12
-
-
34250208181
-
Dynamic mutations as digital genetic modulators of brain development, function and dysfunction
-
Nithianantharajah J, Hannan AJ. 2007. Dynamic mutations as digital genetic modulators of brain development, function and dysfunction. Bioessays 29:525-535.
-
(2007)
Bioessays
, vol.29
, pp. 525-535
-
-
Nithianantharajah, J.1
Hannan, A.J.2
-
13
-
-
24944460598
-
Shelterin: The protein complex that shapes and safeguards human telomeres
-
de Lange T. 2005. Shelterin: the protein complex that shapes and safeguards human telomeres. Genes Dev 19:2100-2110.
-
(2005)
Genes Dev
, vol.19
, pp. 2100-2110
-
-
de Lange, T.1
-
14
-
-
0025329846
-
Distribution of non-telomeric sites of the (TTAGGG)n telomeric sequence in vertebrate chromosomes
-
Meyne J, Baker RJ, Hobart HH, Hsu TC, Ryder OA, et al. 1990. Distribution of non-telomeric sites of the (TTAGGG)n telomeric sequence in vertebrate chromosomes. Chromosoma 99:3-10.
-
(1990)
Chromosoma
, vol.99
, pp. 3-10
-
-
Meyne, J.1
Baker, R.J.2
Hobart, H.H.3
Hsu, T.C.4
Ryder, O.A.5
-
16
-
-
1542513556
-
Mobile elements: Drivers of genome evolution
-
Kazazian HH Jr. 2004. Mobile elements: drivers of genome evolution. Science 303:1626-1632.
-
(2004)
Science
, vol.303
, pp. 1626-1632
-
-
Kazazian Jr., H.H.1
-
17
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, et al. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420:520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
-
18
-
-
0023946286
-
Human genome organization: ALU, LINEs, and the molecular structure of metaphase chromosome bands
-
Korenberg JR, Rykowski MC. 1988. Human genome organization: ALU, LINEs, and the molecular structure of metaphase chromosome bands. Cell 53:391-400.
-
(1988)
Cell
, vol.53
, pp. 391-400
-
-
Korenberg, J.R.1
Rykowski, M.C.2
-
19
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
-
20
-
-
0010314873
-
The distribution of interspersed repeats is nonuniform and conserved in the mouse and human genomes
-
Soriano P, Meunier-Rotival M, Bernardi G. 1983. The distribution of interspersed repeats is nonuniform and conserved in the mouse and human genomes. Proc Natl Acad Sci USA 80:1816-1820.
-
(1983)
Proc Natl Acad Sci USA
, vol.80
, pp. 1816-1820
-
-
Soriano, P.1
Meunier-Rotival, M.2
Bernardi, G.3
-
21
-
-
32044455298
-
Large-scale structure of genomic methylation patterns
-
Rollins RA, Haghighi F, Edwards JR, Das R, Zhang MQ, et al. 2006. Large-scale structure of genomic methylation patterns. Genome Res 16: 157-163.
-
(2006)
Genome Res
, vol.16
, pp. 157-163
-
-
Rollins, R.A.1
Haghighi, F.2
Edwards, J.R.3
Das, R.4
Zhang, M.Q.5
-
22
-
-
0035065510
-
Retrotransposons as epigenetic mediators of phenotypic variation in mammals
-
Whitelaw E, Martin DI. 2001. Retrotransposons as epigenetic mediators of phenotypic variation in mammals. Nat Genet 27:361-365.
-
(2001)
Nat Genet
, vol.27
, pp. 361-365
-
-
Whitelaw, E.1
Martin, D.I.2
-
23
-
-
33947303168
-
Transposable elements and the epigenetic regulation of the genome
-
Slotkin RK, Martienssen R. 2007. Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 8:272-285.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 272-285
-
-
Slotkin, R.K.1
Martienssen, R.2
-
24
-
-
33846283384
-
Dynamic genome architecture in the nuclear space: Regulation of gene expression in three dimensions
-
Lanctot C, Cheutin T, Cremer M, Cavalli G, Cremer T. 2007. Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions. Nat Rev Genet 8:104-115.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 104-115
-
-
Lanctot, C.1
Cheutin, T.2
Cremer, M.3
Cavalli, G.4
Cremer, T.5
-
25
-
-
0035200784
-
Chromosomal G-dark bands determine the spatial organization of centromeric heterochromatin in the nucleus
-
Carvalho C, Pereira HM, Ferreira J, Pina C, Mendonça D, et al. 2001. Chromosomal G-dark bands determine the spatial organization of centromeric heterochromatin in the nucleus. Mol Biol Cell 12:3563-3572.
-
(2001)
Mol Biol Cell
, vol.12
, pp. 3563-3572
-
-
Carvalho, C.1
Pereira, H.M.2
Ferreira, J.3
Pina, C.4
Mendonça, D.5
-
26
-
-
35548953639
-
Inter-chromosomal gene regulation in the mammalian cell nucleus
-
de Laat W, Grosveld F. 2007. Inter-chromosomal gene regulation in the mammalian cell nucleus. Curr Opin Genet Dev 17:456-464.
-
(2007)
Curr Opin Genet Dev
, vol.17
, pp. 456-464
-
-
de Laat, W.1
Grosveld, F.2
-
27
-
-
34249937354
-
Thousands of human mobile element fragments undergo strong purifying selection near developmental genes
-
Lowe CB, Bejerano G, Haussler D. 2007. Thousands of human mobile element fragments undergo strong purifying selection near developmental genes. Proc Natl Acad Sci USA 104:8005-8010.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 8005-8010
-
-
Lowe, C.B.1
Bejerano, G.2
Haussler, D.3
-
28
-
-
34248576291
-
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
-
Mikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, et al. 2007. Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature 447:167-177.
-
(2007)
Nature
, vol.447
, pp. 167-177
-
-
Mikkelsen, T.S.1
Wakefield, M.J.2
Aken, B.3
Amemiya, C.T.4
Chang, J.L.5
-
29
-
-
34249848791
-
Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites
-
Xie X, Mikkelsen TS, Gnirke A, Lindblad-Toh K, Kellis M, et al. 2007. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proc Natl Acad Sci USA 104:7145-7150.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 7145-7150
-
-
Xie, X.1
Mikkelsen, T.S.2
Gnirke, A.3
Lindblad-Toh, K.4
Kellis, M.5
-
30
-
-
34250305146
-
-
Birney E, Stamatoyannopoulos JA, Dutta A, Guigo R, Gingeras TR, et al. (ENCODE Project Consortium) 2007. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447:799-816.
-
Birney E, Stamatoyannopoulos JA, Dutta A, Guigo R, Gingeras TR, et al. (ENCODE Project Consortium) 2007. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447:799-816.
-
-
-
-
31
-
-
0038709269
-
A novel class of SINE elements derived from 5S rRNA
-
Kapitonov VV, Jurka J. 2003. A novel class of SINE elements derived from 5S rRNA. Mol Biol Evol 20:694-702.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 694-702
-
-
Kapitonov, V.V.1
Jurka, J.2
-
32
-
-
0021126293
-
Distinctive sequence organization and functional programming of an Alu repeat promoter
-
Perez-Stable C, Ayres TM, Shen CK. 1984. Distinctive sequence organization and functional programming of an Alu repeat promoter. Proc Natl Acad Sci USA 81:5291-5295.
-
(1984)
Proc Natl Acad Sci USA
, vol.81
, pp. 5291-5295
-
-
Perez-Stable, C.1
Ayres, T.M.2
Shen, C.K.3
-
33
-
-
0024403433
-
Purification and characterization of transcription factor IIIC2
-
Yoshinaga SK, L'Etoile ND, Berk AJ. 1989. Purification and characterization of transcription factor IIIC2. J Biol Chem 264:10726-10731.
-
(1989)
J Biol Chem
, vol.264
, pp. 10726-10731
-
-
Yoshinaga, S.K.1
L'Etoile, N.D.2
Berk, A.J.3
-
34
-
-
0030992490
-
RNA polymerase III transcription repressed by Rb through its interactions with TFIIIB and TFIIIC2
-
Chu WM, Wang Z, Roeder RG, Schmid CW. 1997. RNA polymerase III transcription repressed by Rb through its interactions with TFIIIB and TFIIIC2. J Biol Chem 272:14755-14761.
-
(1997)
J Biol Chem
, vol.272
, pp. 14755-14761
-
-
Chu, W.M.1
Wang, Z.2
Roeder, R.G.3
Schmid, C.W.4
-
35
-
-
0023046916
-
Transcriptional inactivity of Alu repeats in HeLa cells
-
Paulson KE, Schmid CW. 1986. Transcriptional inactivity of Alu repeats in HeLa cells. Nucleic Acids Res 14:6145-6158.
-
(1986)
Nucleic Acids Res
, vol.14
, pp. 6145-6158
-
-
Paulson, K.E.1
Schmid, C.W.2
-
37
-
-
0025063806
-
DNA methylation inhibits transcription by RNA polymerase III of a tRNA gene, but not of a 5S rRNA gene
-
Besser D, Gotz F, Schulze-Forster K, Wagner H, Kroger H, et al. 1990. DNA methylation inhibits transcription by RNA polymerase III of a tRNA gene, but not of a 5S rRNA gene. FEBS Lett 269:358-362.
-
(1990)
FEBS Lett
, vol.269
, pp. 358-362
-
-
Besser, D.1
Gotz, F.2
Schulze-Forster, K.3
Wagner, H.4
Kroger, H.5
-
38
-
-
0025220727
-
Transcription and replication silencer element is present within conserved region of human Alu repeats interacting with nuclear protein
-
Tomilin NV, Iguchi-Ariga SM, Ariga H. 1990. Transcription and replication silencer element is present within conserved region of human Alu repeats interacting with nuclear protein. FEBS Lett 263:69-72.
-
(1990)
FEBS Lett
, vol.263
, pp. 69-72
-
-
Tomilin, N.V.1
Iguchi-Ariga, S.M.2
Ariga, H.3
-
40
-
-
0030340346
-
Specific binding sites for a pol III transcriptional repressor and pol II transcription factor YY1 within the internucleosomal spacer region in primate Alu repetitive elements
-
Humphrey GW, Englander EW, Howard BH. 1996. Specific binding sites for a pol III transcriptional repressor and pol II transcription factor YY1 within the internucleosomal spacer region in primate Alu repetitive elements. Gene Expr 6:151-168.
-
(1996)
Gene Expr
, vol.6
, pp. 151-168
-
-
Humphrey, G.W.1
Englander, E.W.2
Howard, B.H.3
-
41
-
-
1842665155
-
Clusters of regulatory signals for RNA polymerase II transcription associated with Alu family repeats and CpG islands in human promoters
-
Oei SL, Babich VS, Kazakov VI, Usmanova NM, Kropotov AV, et al. 2004. Clusters of regulatory signals for RNA polymerase II transcription associated with Alu family repeats and CpG islands in human promoters. Genomics 83:873-882.
-
(2004)
Genomics
, vol.83
, pp. 873-882
-
-
Oei, S.L.1
Babich, V.S.2
Kazakov, V.I.3
Usmanova, N.M.4
Kropotov, A.V.5
-
42
-
-
33646912186
-
A role for TFIIIC transcription factor complex in genome organization
-
Noma K, Cam HP, Maraia RJ, Grewal SI. 2006. A role for TFIIIC transcription factor complex in genome organization. Cell 125:859-872.
-
(2006)
Cell
, vol.125
, pp. 859-872
-
-
Noma, K.1
Cam, H.P.2
Maraia, R.J.3
Grewal, S.I.4
-
43
-
-
34447515727
-
Developmentally regulated activation of a SINE B2 repeat as a domain boundary in organogenesis
-
Lunyak VV, Prefontaine GG, Nũnez E, Cramer T, Ju BG, et al. 2007. Developmentally regulated activation of a SINE B2 repeat as a domain boundary in organogenesis. Science 317:248-251.
-
(2007)
Science
, vol.317
, pp. 248-251
-
-
Lunyak, V.V.1
Prefontaine, G.G.2
Nũnez, E.3
Cramer, T.4
Ju, B.G.5
-
44
-
-
33646086225
-
The length of CpG islands is associated with the distribution of Alu and L1 retroelements
-
Kang MI, Rhyu MG, Kim YH, Jung YC, Hong SJ, et al. 2006. The length of CpG islands is associated with the distribution of Alu and L1 retroelements. Genomics 87:580-590.
-
(2006)
Genomics
, vol.87
, pp. 580-590
-
-
Kang, M.I.1
Rhyu, M.G.2
Kim, Y.H.3
Jung, Y.C.4
Hong, S.J.5
-
45
-
-
33646120548
-
DNA motifs associated with aberrant CpG island methylation
-
Feltus FA, Lee EK, Costello JF, Plass C, Vertino PM. 2006. DNA motifs associated with aberrant CpG island methylation. Genomics 87:572-579.
-
(2006)
Genomics
, vol.87
, pp. 572-579
-
-
Feltus, F.A.1
Lee, E.K.2
Costello, J.F.3
Plass, C.4
Vertino, P.M.5
-
46
-
-
0027379052
-
Identification and characterization of an Alu-containing, T-cell- specific enhancer located in the last intron of the human CD8 alpha gene
-
Hambor JE, Mennone J, Coon ME, Hanke JH, Kavathas P. 1993. Identification and characterization of an Alu-containing, T-cell- specific enhancer located in the last intron of the human CD8 alpha gene. Mol Cell Biol 13:7056-7070.
-
(1993)
Mol Cell Biol
, vol.13
, pp. 7056-7070
-
-
Hambor, J.E.1
Mennone, J.2
Coon, M.E.3
Hanke, J.H.4
Kavathas, P.5
-
47
-
-
0029153564
-
The consensus sequence of a major Alu subfamily contains a functional retinoic acid response element
-
Vansant G, Reynolds WF. 1995. The consensus sequence of a major Alu subfamily contains a functional retinoic acid response element. Proc Natl Acad Sci USA 92:8229-8233.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 8229-8233
-
-
Vansant, G.1
Reynolds, W.F.2
-
48
-
-
0029999154
-
An Alu element in the myeloperoxidase promoter contains a composite SP1-thyroid hormone-retinoic acid response element
-
Piedrafita FJ, Molander RB, Vansant G, Orlova EA, Pfahl M, et al. 1996. An Alu element in the myeloperoxidase promoter contains a composite SP1-thyroid hormone-retinoic acid response element. J Biol Chem 271:14412-14420.
-
(1996)
J Biol Chem
, vol.271
, pp. 14412-14420
-
-
Piedrafita, F.J.1
Molander, R.B.2
Vansant, G.3
Orlova, E.A.4
Pfahl, M.5
-
49
-
-
0031768323
-
Further characterization of thyroid hormone response elements in the human type 1 iodothyronine deiodinase gene
-
Zhang CY, Kim S, Harney JW, Larsen PR. 1998. Further characterization of thyroid hormone response elements in the human type 1 iodothyronine deiodinase gene. Endocrinology 139:1156-1163.
-
(1998)
Endocrinology
, vol.139
, pp. 1156-1163
-
-
Zhang, C.Y.1
Kim, S.2
Harney, J.W.3
Larsen, P.R.4
-
50
-
-
0032715524
-
Association of some potential hormone response elements in human genes with the Alu family repeats
-
Babich V, Aksenov N, Alexeenko V, Oei SL, Buchlow G, et al. 1999. Association of some potential hormone response elements in human genes with the Alu family repeats. Gene 239:341-349.
-
(1999)
Gene
, vol.239
, pp. 341-349
-
-
Babich, V.1
Aksenov, N.2
Alexeenko, V.3
Oei, S.L.4
Buchlow, G.5
-
51
-
-
0035809197
-
PITX2 regulates procollagen lysyl hydroxylase (PLOD) gene expression: Implications for the pathology of Rieger syndrome
-
Hjalt TA, Amendt BA, Murray JC. 2001. PITX2 regulates procollagen lysyl hydroxylase (PLOD) gene expression: implications for the pathology of Rieger syndrome. J Cell Biol 152:545-552.
-
(2001)
J Cell Biol
, vol.152
, pp. 545-552
-
-
Hjalt, T.A.1
Amendt, B.A.2
Murray, J.C.3
-
52
-
-
33746377600
-
Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes
-
Polak P, Domany E. 2006. Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes. BMC Genomics 7:133-148.
-
(2006)
BMC Genomics
, vol.7
, pp. 133-148
-
-
Polak, P.1
Domany, E.2
-
53
-
-
0346888506
-
Genetic dissection of Pitx2 in craniofacial development uncovers new functions in branchial arch morphogenesis, late aspects of tooth morphogenesis and cell migration
-
Liu W, Selever J, Lu MF, Martin JF. 2003. Genetic dissection of Pitx2 in craniofacial development uncovers new functions in branchial arch morphogenesis, late aspects of tooth morphogenesis and cell migration. Development 130:6375-6385.
-
(2003)
Development
, vol.130
, pp. 6375-6385
-
-
Liu, W.1
Selever, J.2
Lu, M.F.3
Martin, J.F.4
-
54
-
-
33846955397
-
Widespread Alu repeat-driven expansion of consensus DR2 retinoic acid response elements during primate evolution
-
Laperriere D, Wang TT, White JH, Mader S. 2007. Widespread Alu repeat-driven expansion of consensus DR2 retinoic acid response elements during primate evolution. BMC Genomics 8:23-33.
-
(2007)
BMC Genomics
, vol.8
, pp. 23-33
-
-
Laperriere, D.1
Wang, T.T.2
White, J.H.3
Mader, S.4
-
55
-
-
23744459419
-
Synergistic recognition of an epigenetic DNA element by Pleiohomeotic and a Polycomb core complex
-
Mohd-Sarip A, Cléard F, Mishra RK, Karch F, Verrijzer CP. 2005. Synergistic recognition of an epigenetic DNA element by Pleiohomeotic and a Polycomb core complex. Genes Dev 19:1755-1760.
-
(2005)
Genes Dev
, vol.19
, pp. 1755-1760
-
-
Mohd-Sarip, A.1
Cléard, F.2
Mishra, R.K.3
Karch, F.4
Verrijzer, C.P.5
-
56
-
-
0035144663
-
The polycomb group protein EED interacts with YY1, and both proteins induce neural tissue in Xenopus embryos
-
Satijn DP, Hamer KM, den Blaauwen J, Otte AP. 2001. The polycomb group protein EED interacts with YY1, and both proteins induce neural tissue in Xenopus embryos. Mol Cell Biol 21:1360-1369.
-
(2001)
Mol Cell Biol
, vol.21
, pp. 1360-1369
-
-
Satijn, D.P.1
Hamer, K.M.2
den Blaauwen, J.3
Otte, A.P.4
-
57
-
-
7544230144
-
The Polycomb Ezh2 methyltransferase regulates muscle gene expression and skeletal muscle differentiation
-
Caretti G, Di Padova M, Micales B, Lyons GE, Sartorelli V. 2004. The Polycomb Ezh2 methyltransferase regulates muscle gene expression and skeletal muscle differentiation. Genes Dev 18:2627-2638.
-
(2004)
Genes Dev
, vol.18
, pp. 2627-2638
-
-
Caretti, G.1
Di Padova, M.2
Micales, B.3
Lyons, G.E.4
Sartorelli, V.5
-
58
-
-
21544483529
-
Enzymatic DNA methylation is an epigenetic control for genetic functions of the cell
-
Vanyushin BF. 2005. Enzymatic DNA methylation is an epigenetic control for genetic functions of the cell. Biochemistry (Mose) 70:488-499.
-
(2005)
Biochemistry (Mose)
, vol.70
, pp. 488-499
-
-
Vanyushin, B.F.1
-
59
-
-
0030840954
-
Cytosine methylation and the ecology of intragenomic parasites
-
Yoder JA, Walsch CP, Bestor TH. 1997. Cytosine methylation and the ecology of intragenomic parasites. Trends Genet 13:335-340.
-
(1997)
Trends Genet
, vol.13
, pp. 335-340
-
-
Yoder, J.A.1
Walsch, C.P.2
Bestor, T.H.3
-
60
-
-
34248195006
-
CpG methylation is targeted to transcription units in an invertebrate genome
-
Suzuki MM, Kerr AR, De Sousa D, Bird A. 2007. CpG methylation is targeted to transcription units in an invertebrate genome. Genome Res 17:625-631.
-
(2007)
Genome Res
, vol.17
, pp. 625-631
-
-
Suzuki, M.M.1
Kerr, A.R.2
De Sousa, D.3
Bird, A.4
-
61
-
-
34548799740
-
LINE-1 ORF1 protein localizes in stress granules with other RNA-binding proteins, including components of RNA interference RNA-induced silencing complex
-
Goodier JL, Zhang L, Vetter MR, Kazazian HH Jr. 2007. LINE-1 ORF1 protein localizes in stress granules with other RNA-binding proteins, including components of RNA interference RNA-induced silencing complex. Mol Cell Biol 27:6469-6483.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 6469-6483
-
-
Goodier, J.L.1
Zhang, L.2
Vetter, M.R.3
Kazazian Jr., H.H.4
-
62
-
-
0037039323
-
Short interspersed transposable elements (SINEs) are excluded from imprinted regions in the human genome
-
Greally JM. 2002. Short interspersed transposable elements (SINEs) are excluded from imprinted regions in the human genome. Proc Natl Acad Sci USA 99:327-332.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 327-332
-
-
Greally, J.M.1
-
64
-
-
7944232060
-
Alu element mutation spectra: Molecular clocks and the effect of DNA methylation
-
Xing J, Hedges DJ, Han K, Wang H, Cordaux R, et al. 2004. Alu element mutation spectra: molecular clocks and the effect of DNA methylation. J Mol Biol 344:675-682.
-
(2004)
J Mol Biol
, vol.344
, pp. 675-682
-
-
Xing, J.1
Hedges, D.J.2
Han, K.3
Wang, H.4
Cordaux, R.5
-
65
-
-
15744401773
-
Eukaryotic cytosine methyltransferases
-
Goll MG, Bestor TH. 2005. Eukaryotic cytosine methyltransferases. Annu Rev Biochem 74:481-514.
-
(2005)
Annu Rev Biochem
, vol.74
, pp. 481-514
-
-
Goll, M.G.1
Bestor, T.H.2
-
66
-
-
0026658662
-
Characterization of MeCP2, a vertebrate DNA binding protein with affinity for methylated DNA
-
Meehan RR, Lewis JD, Bird AP. 1992. Characterization of MeCP2, a vertebrate DNA binding protein with affinity for methylated DNA. Nucleic Acids Res 20:5085-5092.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 5085-5092
-
-
Meehan, R.R.1
Lewis, J.D.2
Bird, A.P.3
-
67
-
-
0035504192
-
Methyl-CpG-binding protein 2 represses LINE-1 expression and retrotransposition but not Alu transcription
-
Yu F, Zingler N, Schumann G, Sträfling WH. 2001. Methyl-CpG-binding protein 2 represses LINE-1 expression and retrotransposition but not Alu transcription. Nucleic Acids Res 29:4493-4501.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4493-4501
-
-
Yu, F.1
Zingler, N.2
Schumann, G.3
Sträfling, W.H.4
-
69
-
-
33947310031
-
Environmental epigenomics and disease susceptibility
-
Jirtle RL, Skinner MK. 2007. Environmental epigenomics and disease susceptibility. Nat Rev Genet 8:253-262.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 253-262
-
-
Jirtle, R.L.1
Skinner, M.K.2
-
70
-
-
33645744394
-
Evolutionary evidence suggests that CpG island-associated Alus are frequently unmethylated in human germline
-
Brohede J, Rand KN. 2006. Evolutionary evidence suggests that CpG island-associated Alus are frequently unmethylated in human germline. Hum Genet 119:457-458.
-
(2006)
Hum Genet
, vol.119
, pp. 457-458
-
-
Brohede, J.1
Rand, K.N.2
-
71
-
-
34250203240
-
Germline methylation patterns inferred from local nucleotide frequency of repetitive sequences in the human genome
-
Kim TM, Chung YJ, Rhyu MG, Jung MH. 2007. Germline methylation patterns inferred from local nucleotide frequency of repetitive sequences in the human genome. Mamm Genome 18:277-285.
-
(2007)
Mamm Genome
, vol.18
, pp. 277-285
-
-
Kim, T.M.1
Chung, Y.J.2
Rhyu, M.G.3
Jung, M.H.4
-
72
-
-
26444546469
-
Interindividual variability and parent of origin DNA methylation differences at specific human Alu elements
-
Sandovici I, Kassovska-Bratinova S, Loredo-Osti JC, Leppert M, Suarez A, et al. 2005. Interindividual variability and parent of origin DNA methylation differences at specific human Alu elements. Hum Mol Genet 14:2135-2143.
-
(2005)
Hum Mol Genet
, vol.14
, pp. 2135-2143
-
-
Sandovici, I.1
Kassovska-Bratinova, S.2
Loredo-Osti, J.C.3
Leppert, M.4
Suarez, A.5
-
73
-
-
15444372817
-
The profile of repeat-associated histone lysine methylation states in the mouse epigenome
-
Martens JH, O'Sullivan RJ, Braunschweig U, Opravil S, Radolf M, et al. 2005. The profile of repeat-associated histone lysine methylation states in the mouse epigenome. EMBO J 24:800-812.
-
(2005)
EMBO J
, vol.24
, pp. 800-812
-
-
Martens, J.H.1
O'Sullivan, R.J.2
Braunschweig, U.3
Opravil, S.4
Radolf, M.5
-
74
-
-
0042346386
-
Enrichment for histone H3 lysine 9 methylation at AIu repeats in human cells
-
Kondo Y, Issa JP. 2003. Enrichment for histone H3 lysine 9 methylation at AIu repeats in human cells. J Biol Chem 278:27658-27662.
-
(2003)
J Biol Chem
, vol.278
, pp. 27658-27662
-
-
Kondo, Y.1
Issa, J.P.2
-
75
-
-
0035802397
-
Similar integration but different stability of Alus and LINEs in the human genome
-
Pavlicek A, Jabbari K, Paces J, Paces V, Hejnar JV, et al. 2001. Similar integration but different stability of Alus and LINEs in the human genome. Gene 276:39-45.
-
(2001)
Gene
, vol.276
, pp. 39-45
-
-
Pavlicek, A.1
Jabbari, K.2
Paces, J.3
Paces, V.4
Hejnar, J.V.5
-
76
-
-
0036798062
-
Retroelement distributions in the human genome: Variations associated with age and proximity to genes
-
Medstrand P, van de Lagemaat LN, Mager DL. 2002. Retroelement distributions in the human genome: variations associated with age and proximity to genes. Genome Res 12:1483-1495.
-
(2002)
Genome Res
, vol.12
, pp. 1483-1495
-
-
Medstrand, P.1
van de Lagemaat, L.N.2
Mager, D.L.3
-
78
-
-
43749093886
-
SINEs in mammalian genomes can serve as helper signals ("boosters") in formation of facultative heterochromatin
-
Usmanova NM, Kazakov VI, Tomilin NV. 2008. SINEs in mammalian genomes can serve as helper signals ("boosters") in formation of facultative heterochromatin. Tsitologiya (Russian) 50:256-260.
-
(2008)
Tsitologiya (Russian)
, vol.50
, pp. 256-260
-
-
Usmanova, N.M.1
Kazakov, V.I.2
Tomilin, N.V.3
-
79
-
-
0842277811
-
Duplication, coclustering, and selection of human Alu retrotransposons
-
Jurka J, Kohany O, Pavlicek A, Kapitonov VV, Jurka MV. 2004. Duplication, coclustering, and selection of human Alu retrotransposons. Proc Natl Acad Sci USA 101:1268-1272.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 1268-1272
-
-
Jurka, J.1
Kohany, O.2
Pavlicek, A.3
Kapitonov, V.V.4
Jurka, M.V.5
-
80
-
-
8644284670
-
Clustering, duplication and chromosomal distribution of mouse SINE retrotransposons
-
Jurka J, Kohany O, Pavlicek A, Kapitonov VV, Jurka MV. 2005. Clustering, duplication and chromosomal distribution of mouse SINE retrotransposons. Cytogenet Genome Res 110:117-123.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 117-123
-
-
Jurka, J.1
Kohany, O.2
Pavlicek, A.3
Kapitonov, V.V.4
Jurka, M.V.5
-
81
-
-
10344222632
-
Patterns of segmental duplication in the human genome
-
Zhang L, Lu HH, Chung WY, Yang J, Li WH. 2005. Patterns of segmental duplication in the human genome. Mol Biol Evol 22:135-141.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 135-141
-
-
Zhang, L.1
Lu, H.H.2
Chung, W.Y.3
Yang, J.4
Li, W.H.5
-
82
-
-
33846972640
-
Selection against LINE-1 retrotransposons results principally from their ability to mediate ectopic recombination
-
Song M, Boissinot S. 2007. Selection against LINE-1 retrotransposons results principally from their ability to mediate ectopic recombination. Gene 390:206-213.
-
(2007)
Gene
, vol.390
, pp. 206-213
-
-
Song, M.1
Boissinot, S.2
-
83
-
-
0032784908
-
Interspersed repeats and other mementos of transposable elements in mammalian genomes
-
Smit AF. 1999. Interspersed repeats and other mementos of transposable elements in mammalian genomes. Curr Opin Genet Dev 9:657-663.
-
(1999)
Curr Opin Genet Dev
, vol.9
, pp. 657-663
-
-
Smit, A.F.1
-
84
-
-
33646248389
-
Recently integrated Alu retrotransposons are essentially neutral residents of the human genome
-
Cordaux R, Lee J, Dinoso L, Batzer MA. 2006. Recently integrated Alu retrotransposons are essentially neutral residents of the human genome. Gene 373:138-144.
-
(2006)
Gene
, vol.373
, pp. 138-144
-
-
Cordaux, R.1
Lee, J.2
Dinoso, L.3
Batzer, M.A.4
-
85
-
-
34547641090
-
Population bottlenecks as a potential major shaping force of human genome architecture
-
Gherman A, Chen PE, Teslovich TM, Stankiewicz P, Withers M, et al. 2007. Population bottlenecks as a potential major shaping force of human genome architecture. PLoS Genet 3:e119.
-
(2007)
PLoS Genet
, vol.3
-
-
Gherman, A.1
Chen, P.E.2
Teslovich, T.M.3
Stankiewicz, P.4
Withers, M.5
-
86
-
-
0032531815
-
Does SINE evolution preclude Alu function?
-
Schmid CW. 1998. Does SINE evolution preclude Alu function? Nucleic Acids Res 26:4541-4550.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 4541-4550
-
-
Schmid, C.W.1
-
87
-
-
33751012428
-
Alu elements as regulators of gene expression
-
Hasler J, Strub K. 2006. Alu elements as regulators of gene expression. Nucleic Acids Res 34:5491-5497.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5491-5497
-
-
Hasler, J.1
Strub, K.2
-
88
-
-
34248218111
-
Radial chromatin positioning is shaped by local gene density, not by gene expression
-
Küpper K, Kölbl A, Biener D, Dittrich S, von Hase J, et al. 2007. Radial chromatin positioning is shaped by local gene density, not by gene expression. Chromosoma 116:285-306.
-
(2007)
Chromosoma
, vol.116
, pp. 285-306
-
-
Küpper, K.1
Kölbl, A.2
Biener, D.3
Dittrich, S.4
von Hase, J.5
-
89
-
-
33745593972
-
Folding and organization of a contiguous chromosome region according to the gene distribution pattern in primary genomic sequence
-
Shopland LS, Lynch CR, Peterson KA, Thornton K, Kepper N, et al. 2006. Folding and organization of a contiguous chromosome region according to the gene distribution pattern in primary genomic sequence. J Cell Biol 174:27-38.
-
(2006)
J Cell Biol
, vol.174
, pp. 27-38
-
-
Shopland, L.S.1
Lynch, C.R.2
Peterson, K.A.3
Thornton, K.4
Kepper, N.5
-
90
-
-
33847077659
-
Beyond the sequence: Cellular organization of genome function
-
Misteli T. 2007. Beyond the sequence: cellular organization of genome function. Cell 128:787-800.
-
(2007)
Cell
, vol.128
, pp. 787-800
-
-
Misteli, T.1
-
91
-
-
4644329310
-
Insertion of telomeric repeats at intrachromosomal break sites during primate evolution
-
Nergadze SG, Rocchi M, Azzalin CM, Mondello C, Giulotto E. 2004. Insertion of telomeric repeats at intrachromosomal break sites during primate evolution. Genome Res 14:1704-1710.
-
(2004)
Genome Res
, vol.14
, pp. 1704-1710
-
-
Nergadze, S.G.1
Rocchi, M.2
Azzalin, C.M.3
Mondello, C.4
Giulotto, E.5
-
92
-
-
0036626597
-
Distribution of intrachromosomal telomeric sequences (ITS) on Macaca fascicularis (Primates) chromosomes and their implication for chromosome evolution
-
Ruiz-Herrera A, García F, Azzalin C, Giulotto E, Egozcue J, et al. 2002. Distribution of intrachromosomal telomeric sequences (ITS) on Macaca fascicularis (Primates) chromosomes and their implication for chromosome evolution. Hum Genet 110:578-586.
-
(2002)
Hum Genet
, vol.110
, pp. 578-586
-
-
Ruiz-Herrera, A.1
García, F.2
Azzalin, C.3
Giulotto, E.4
Egozcue, J.5
-
93
-
-
0037160533
-
Molecular organization of internal telomeric sequences in Chinese hamster chromosomes
-
Faravelli M, Azzalin CM, Bertoni L, Chernova O, Attolini C, et al. 2002. Molecular organization of internal telomeric sequences in Chinese hamster chromosomes. Gene 283:11-16.
-
(2002)
Gene
, vol.283
, pp. 11-16
-
-
Faravelli, M.1
Azzalin, C.M.2
Bertoni, L.3
Chernova, O.4
Attolini, C.5
-
94
-
-
0242606276
-
Protection of internal (TTAGGG)n repeats in Chinese hamster cells by telomeric protein T RF1
-
Krutilina RI, Smirnova AN, Mudrak OS, Pleskach NM, Svetlova MP, et al. 2003. Protection of internal (TTAGGG)n repeats in Chinese hamster cells by telomeric protein T RF1. Oncogene 22:6690-6698.
-
(2003)
Oncogene
, vol.22
, pp. 6690-6698
-
-
Krutilina, R.I.1
Smirnova, A.N.2
Mudrak, O.S.3
Pleskach, N.M.4
Svetlova, M.P.5
-
95
-
-
15744362987
-
Actinomycin D induces histone gamma-H2AX foci and complex formation of gamma-H2AX with Ku70 and nuclear DNA helicase II
-
Mischo HE, Hemmerich P, Grosse F, Zhang S. 2005. Actinomycin D induces histone gamma-H2AX foci and complex formation of gamma-H2AX with Ku70 and nuclear DNA helicase II. J Biol Chem 280:9586-9594.
-
(2005)
J Biol Chem
, vol.280
, pp. 9586-9594
-
-
Mischo, H.E.1
Hemmerich, P.2
Grosse, F.3
Zhang, S.4
-
96
-
-
33947585005
-
Long interstitial (TTAGGG)n arrays do not colocalize with repressive chromatin modifications in Chinese hamster cells
-
Svetlova MP, Solovjeva LV, Smirnova AN, Tomilin NV. 2007. Long interstitial (TTAGGG)n arrays do not colocalize with repressive chromatin modifications in Chinese hamster cells. Cell Biol Int 31:308-315.
-
(2007)
Cell Biol Int
, vol.31
, pp. 308-315
-
-
Svetlova, M.P.1
Solovjeva, L.V.2
Smirnova, A.N.3
Tomilin, N.V.4
-
97
-
-
0348150714
-
Maintenance of stable heterochromatin domains by dynamic HP1 binding
-
Cheutin T, McNairn AJ, Jenuwein T, Gilbert DM, Singh PB, et al. 2003. Maintenance of stable heterochromatin domains by dynamic HP1 binding. Science 299:721-725.
-
(2003)
Science
, vol.299
, pp. 721-725
-
-
Cheutin, T.1
McNairn, A.J.2
Jenuwein, T.3
Gilbert, D.M.4
Singh, P.B.5
-
98
-
-
2942587456
-
Dynamics of protein binding to telomeres in living cells: Implications for telomere structure and function
-
Mattern KA, Swiggers SJ, Nigg AL, Löwenberg B, Houtsmuller AB, et al. 2004. Dynamics of protein binding to telomeres in living cells: implications for telomere structure and function. Mol Cell Biol 24:5587-5594.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 5587-5594
-
-
Mattern, K.A.1
Swiggers, S.J.2
Nigg, A.L.3
Löwenberg, B.4
Houtsmuller, A.B.5
-
99
-
-
37349043972
-
Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends
-
Azzalin CM, Reichenbach P, Khoriauli L, Giulotto E, Lingner J. 2007. Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends. Science 318:798-801.
-
(2007)
Science
, vol.318
, pp. 798-801
-
-
Azzalin, C.M.1
Reichenbach, P.2
Khoriauli, L.3
Giulotto, E.4
Lingner, J.5
-
100
-
-
33646021963
-
Long-range directional movement of an interphase chromosome site
-
Chuang CH, Carpenter AE, Fuchsova B, Johnson T, de Lanerolle P, et al. 2006. Long-range directional movement of an interphase chromosome site. Curr Biol 16:825-831.
-
(2006)
Curr Biol
, vol.16
, pp. 825-831
-
-
Chuang, C.H.1
Carpenter, A.E.2
Fuchsova, B.3
Johnson, T.4
de Lanerolle, P.5
|