-
1
-
-
0031953266
-
Sulfur-inhibited Thermosphaera aggregans sp. nov., a new genus of hyperthermophilic archaea isolated after its prediction from environmentally derived 16S rRNA sequence
-
PubMed doi:10.1099/00207713-48-1-31
-
Huber R, Dyba D, Huber H, Burggraf S, Rachel R. Sulfur-inhibited Thermosphaera aggregans sp. nov., a new genus of hyperthermophilic archaea isolated after its prediction from environmentally derived 16S rRNA sequence. Int J Syst Bacteriol 1998; 48:31-38. PubMed doi:10.1099/00207713-48-1-31
-
(1998)
Int J Syst Bacteriol
, vol.48
, pp. 31-38
-
-
Huber, R.1
Dyba, D.2
Huber, H.3
Burggraf, S.4
Rachel, R.5
-
2
-
-
0029061139
-
Isolation of a hyperthermophilic archaeum predicted by in situ RNA analysis
-
PubMed doi:10.1038/376057a0
-
Huber R, Burggraf S, Mayer T, Barns SM, Rossna-gel P, Stetter KO. Isolation of a hyperthermophilic archaeum predicted by in situ RNA analysis. Na-ture 1995; 376:57-58. PubMed doi:10.1038/376057a0
-
(1995)
Na-ture
, vol.376
, pp. 57-58
-
-
Huber, R.1
Burggraf, S.2
Mayer, T.3
Barns, S.M.4
Rossna-Gel, P.5
Stetter, K.O.6
-
3
-
-
0019983008
-
Desulfu-rococcaceae, the second family of the extremely thermophilic, anaerobic, sulfur-respiring Thermo-proteales
-
Zillig W, Stetter KO, Prangishvilli D, Schäfer W, Wunderl S, Janekovic D, Holz I, Palm P. Desulfu-rococcaceae, the second family of the extremely thermophilic, anaerobic, sulfur-respiring Thermo-proteales. Zentralbl Bakeriol Parasitenkd Infek-tionskr Hyg Abt 1 Orig 1982; C3:304-317.
-
(1982)
Zentralbl Bakeriol Parasitenkd Infek-tionskr Hyg Abt 1 Orig
, pp. 304-317
-
-
Zillig, W.1
Stetter, K.O.2
Prangishvilli, D.3
Schäfer, W.4
Wunderl, S.5
Janekovic, D.6
Holz, I.7
Palm, P.8
-
4
-
-
67349175709
-
Microbiology and geochemi-stry of great boiling and mud hot springs in the United States Great Basin
-
PubMed doi:10.1007/s00792-009-0230-x
-
Costa KC, Navarro JB, Shock EL, Zhang CL, Sou-kup D, Hedlund BP. Microbiology and geochemi-stry of great boiling and mud hot springs in the United States Great Basin. Extremophiles 2009; 13:447-459. PubMed doi:10.1007/s00792-009-0230-x
-
(2009)
Extremophiles
, vol.13
, pp. 447-459
-
-
Costa, K.C.1
Navarro, J.B.2
Shock, E.L.3
Zhang, C.L.4
Sou-Kup, D.5
Hedlund, B.P.6
-
5
-
-
33644829921
-
Arc-haeal and bacterial communities in geochemical-ly diverse hot springs of Yellowstone National Park, USA
-
, doi:10.1111/j.1472-4669.2005.00052.x
-
Meyer-Dombard DR, Shock EL, Amend JP. Arc-haeal and bacterial communities in geochemical-ly diverse hot springs of Yellowstone National Park, USA. Geobiology 2005; 3:211-227. doi:10.1111/j.1472-4669.2005.00052.x
-
(2005)
Geobiology
, vol.3
, pp. 211-227
-
-
Meyer-Dombard, D.R.1
-
6
-
-
64049106942
-
Complete genome sequence of the anaerobic, protein-degrading hyperthermophilic crenarchaeon
-
PubMed doi:10.1128/JB.01525-08
-
Ravin NV, Mardanov AV, Beletsky AV, Kublanov IV, Kolganova TV, Lebedinsky AV, Chernyh NA, Bonch-Osmolovskaya EA, Skryabin KG. Complete genome sequence of the anaerobic, protein-degrading hyperthermophilic crenarchaeon De-sulfurococcus kamchatkensis. J Bacteriol 2009; 191:2371-2379. PubMed doi:10.1128/JB.01525-08
-
(2009)
De-sulfurococcus Kamchatkensis. J Bacteriol
, vol.191
, pp. 2371-2379
-
-
Ravin, N.V.1
Mardanov, A.V.2
Beletsky, A.V.3
Kublanov, I.V.4
Kolganova, T.V.5
Lebedinsky, A.V.6
Chernyh, N.A.7
Bonch-Osmolovskaya, E.A.8
Skryabin, K.G.9
-
7
-
-
65549129274
-
The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenar-chaeota
-
PubMed doi:10.1186/1471-2164-10-145
-
Anderson IJ, Dharmarajan L, Rodriguez J, Hooper S, Porat I, Ulrich LE, Elkins JG, Mavromatis K, Sun H, Land M. The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenar-chaeota. BMC Genomics 2009; 10:145. PubMed doi:10.1186/1471-2164-10-145
-
(2009)
BMC Genomics
, vol.10
, pp. 145
-
-
Anderson, I.J.1
Dharmarajan, L.2
Rodriguez, J.3
Hooper, S.4
Porat, I.5
Ulrich, L.E.6
Elkins, J.G.7
Mavromatis, K.8
Sun, H.9
Land, M.10
-
8
-
-
0036203448
-
Multiple sequence alignment using partial order graphs
-
PubMed doi:10.1093/bioinformatics/18.3.452
-
Lee C, Grasso C, Sharlow MF. Multiple sequence alignment using partial order graphs. Bioinforma-tics 2002; 18:452-464. PubMed doi:10.1093/bioinformatics/18.3.452
-
(2002)
Bioinforma-tics
, vol.18
, pp. 452-464
-
-
Lee, C.1
Grasso, C.2
Sharlow, M.F.3
-
9
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
PubMed
-
Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 2000; 17:540-552. PubMed
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
10
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML web-servers
-
PubMed doi:10.1080/10635150802429642
-
Stamatakis A, Hoover P, Rougemont J. A rapid bootstrap algorithm for the RAxML web-servers. Syst Biol 2008; 57:758-771. PubMed doi:10.1080/10635150802429642
-
(2008)
Syst Biol
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
11
-
-
67650340717
-
How many bootstrap replicates are necessary?
-
doi:10.1007/978-3-642-02008-7_13
-
Pattengale ND, Alipour M, Bininda-Emonds ORP, Moret BME, Stamatakis A. How many bootstrap replicates are necessary? Lect Notes Comput Sci 2009; 5541:184-200. doi:10.1007/978-3-642-02008-7_13
-
(2009)
Lect Notes Comput Sci
, vol.5541
, pp. 184-200
-
-
Pattengale, N.D.1
Alipour, M.2
Bininda-Emonds, O.R.P.3
Moret, B.M.E.4
Stamatakis, A.5
-
12
-
-
75549086416
-
The Genomes On Line Database (GOLD) in 2009: Status of genomic and metagenomic projects and their associated metadata
-
PubMed doi:10.1093/nar/gkp848
-
Liolios K, Chen IM, Mavromatis K, Tavernarakis N, Hugenholtz P, Markowitz VM, Kyrpides NC. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res 2010; 38:D346-D354. PubMed doi:10.1093/nar/gkp848
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Liolios, K.1
Chen, I.M.2
Mavromatis, K.3
Tavernarakis, N.4
Hugenholtz, P.5
Markowitz, V.M.6
Kyrpides, N.C.7
-
13
-
-
43449108562
-
Towards a richer description of our complete collection of genomes and metage-nomes: The "Minimum Information about a Ge-nome Sequence" (MIGS) specification
-
PubMed doi:10.1038/nbt1360
-
Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Tompson N, Allen MJ, An-giuoli SV, et al. Towards a richer description of our complete collection of genomes and metage-nomes: the "Minimum Information about a Ge-nome Sequence" (MIGS) specification. Nat Bio-technol 2008; 26:541-547. PubMed doi:10.1038/nbt1360
-
(2008)
Nat Bio-technol
, vol.26
, pp. 541-547
-
-
Field, D.1
Garrity, G.2
Gray, T.3
Morrison, N.4
Selengut, J.5
Sterk, P.6
Tatusova, T.7
Tompson, N.8
Allen, M.J.9
An-Giuoli, S.V.10
-
14
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the do-mains Archaea, Bacteria, and
-
PubMed doi:10.1073/pnas.87.12.4576
-
Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: proposal for the do-mains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 1990; 87:4576-4579. PubMed doi:10.1073/pnas.87.12.4576
-
(1990)
Eucarya. Proc Natl Acad Sci USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
15
-
-
0000685441
-
The Road Map to the Ma-nual
-
In: Garrity GM, Boone DR, Castenholz RW, Second Edition, Volume 1, Springer, New York
-
Garrity GM, Holt JG. The Road Map to the Ma-nual. In: Garrity GM, Boone DR, Castenholz RW (eds), Bergey's Manual of Systematic Bacteriology, Second Edition, Volume 1, Springer, New York, 2001, p. 119-169.
-
(2001)
Bergey's Manual of Systematic Bacteriology
, pp. 119-169
-
-
Garrity, G.M.1
Holt, J.G.2
-
16
-
-
0000864717
-
Class I. Thermoprotei class. nov
-
In: Garrity GM, Boone DR, Castenholz RW, Second Edition, Volume 1, Springer, New York
-
Reysenbach AL. Class I. Thermoprotei class. nov. In: Garrity GM, Boone DR, Castenholz RW (eds), Bergey's Manual of Systematic Bacteriology, Second Edition, Volume 1, Springer, New York, 2001, p. 169.
-
(2001)
Bergey's Manual of Systematic Bacteriology
, pp. 169
-
-
Reysenbach, A.L.1
-
17
-
-
0009387256
-
Order II. Desulfurococcales ord. nov
-
In: Garrity GM, Boone DR, Castenholz RW, Second Edition, Volume 1, Springer, New York
-
Huber H, Stetter O. Order II. Desulfurococcales ord. nov. In: Garrity GM, Boone DR, Castenholz RW (eds), Bergey's Manual of Systematic Bacteri-ology, Second Edition, Volume 1, Springer, New York, 2001, p. 179-180.
-
(2001)
Bergey's Manual of Systematic Bacteri-ology
, pp. 179-180
-
-
Huber, H.1
Stetter, O.2
-
19
-
-
0034069495
-
Gene ontology: Tool for the un-ification of biology
-
PubMed doi:10.1038/75556
-
Ashburner M, Ball CA, Blake JA, Botstein D, But-ler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, et al. Gene ontology: tool for the un-ification of biology. Nat Genet 2000; 25:25-29 PubMed doi:10.1038/75556
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
But-Ler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
20
-
-
0031048502
-
Sulfophobococcus zilligii gen. nov., spec. nov. a novel hyperthermophilic archaeum isolated from hot alkaline springs of Iceland
-
Hensel R, Matussek K, Michalke K, Tacke L, Tin-dall BJ, Kohlhoff M, Siebers B, Dielenschneider J. Sulfophobococcus zilligii gen. nov., spec. nov. a novel hyperthermophilic archaeum isolated from hot alkaline springs of Iceland. Syst Appl Micro-biol 1997; 20:102-110.
-
(1997)
Syst Appl Micro-biol
, vol.20
, pp. 102-110
-
-
Hensel, R.1
Matussek, K.2
Michalke, K.3
Tacke, L.4
Tin-Dall, B.J.5
Kohlhoff, M.6
Siebers, B.7
Dielenschneider, J.8
-
21
-
-
69449091329
-
Desulfurococcus kamchatken-sis sp. nov., a novel hyperthermophilic protein-degrading archaeon isolated from a Kamchatka hot spring
-
PubMed doi:10.1099/ijs.0.006726-0
-
Kublanov IV, Bidjieva SK, Mardanov AV, Bonch-Osmolovskaya EA. Desulfurococcus kamchatken-sis sp. nov., a novel hyperthermophilic protein-degrading archaeon isolated from a Kamchatka hot spring. Int J Syst Evol Microbiol 2009; 59:1743-1747. PubMed doi:10.1099/ijs.0.006726-0
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 1743-1747
-
-
Kublanov, I.V.1
Bidjieva, S.K.2
Mardanov, A.V.3
Bonch-Osmolovskaya, E.A.4
-
22
-
-
0001142734
-
Staphylothermus marinus sp. nov. represents a novel genus of extremely thermophil-ic submarine heterotrophic archaebacteria grow-ing up to 98°C
-
Fiala G, Stetter KO, Jannasch HW, Langworthy TA, Madon J. Staphylothermus marinus sp. nov. represents a novel genus of extremely thermophil-ic submarine heterotrophic archaebacteria grow-ing up to 98°C. Syst Appl Microbiol 1986; 8:106-113.
-
(1986)
Syst Appl Microbiol
, vol.8
, pp. 106-113
-
-
Fiala, G.1
Stetter, K.O.2
Jannasch, H.W.3
Langworthy, T.A.4
Madon, J.5
-
23
-
-
80053362657
-
Genus VIII. Thermosphaera. Bergey's Manual of Systematic Bacteriology 2nd ed
-
(D.R. Boone and R.W. Castenholz, eds.), Springer-Verlag
-
Huber R, Stetter KO. Genus VIII. Thermosphaera. Bergey's Manual of Systematic Bacteriology 2nd ed. (D.R. Boone and R.W. Castenholz, eds.), Springer-Verlag, New York 2001; 1:190-191.
-
New York 2001
, vol.1
, pp. 190-191
-
-
Huber, R.1
Stetter, K.O.2
-
24
-
-
0345065918
-
Complex lipids from Desulfurococcus mobilis, a sulfur-reducing ar-chaebacterium
-
Lanzotti V, De Rosa M, Trincone A, Basso AL, Gambacorta A, Zillig W. Complex lipids from Desulfurococcus mobilis, a sulfur-reducing ar-chaebacterium. Biochim Biophys Acta 1987; 922:95-102.
-
(1987)
Biochim Biophys Acta
, vol.922
, pp. 95-102
-
-
Lanzotti, V.1
de Rosa, M.2
Trincone, A.3
Basso, A.L.4
Gambacorta, A.5
Zillig, W.6
-
25
-
-
84947532410
-
Qui-nones from Archaebacteria, II. Different types of quinones from sulphur-dependent
-
PubMed
-
Thurl S, Witke W, Buhrow I, Schäfer W. Qui-nones from Archaebacteria, II. Different types of quinones from sulphur-dependent Archaebacte-ria. Biol Chem Hoppe Seyler 1986; 367:191-197. PubMed
-
(1986)
Archaebacte-ria. Biol Chem Hoppe Seyler
, vol.367
, pp. 191-197
-
-
Thurl, S.1
Witke, W.2
Buhrow, I.3
Schäfer, W.4
-
26
-
-
0141957432
-
Taxonomy of nonmethanogenic hyper-thermophilic and related thermophilic archaea
-
PubMed
-
Itoh T. Taxonomy of nonmethanogenic hyper-thermophilic and related thermophilic archaea. J Biosci Bioeng 2003; 96:203-212. PubMed
-
(2003)
J Biosci Bioeng
, vol.96
, pp. 203-212
-
-
Itoh, T.1
-
27
-
-
72949101201
-
A phylogeny-driven genomic en-cyclopedia of Bacteria and Archaea
-
PubMed doi:10.1038/nature08656
-
Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova N, Kunin V, Goodwin L, Wu M, Tindall BJ, et al. A phylogeny-driven genomic en-cyclopedia of Bacteria and Archaea. Nature 2009; 462:1056-1060. PubMed doi:10.1038/nature08656
-
(2009)
Nature
, vol.462
, pp. 1056-1060
-
-
Wu, D.1
Hugenholtz, P.2
Mavromatis, K.3
Pukall, R.4
Dalin, E.5
Ivanova, N.6
Kunin, V.7
Goodwin, L.8
Wu, M.9
Tindall, B.J.10
-
29
-
-
3142780737
-
-
Solexa Ltd, PubMed doi:10.1517/14622416.5.4.433
-
Bennett S. Solexa Ltd. Pharmacogenomics 2004; 5:433-438. PubMed doi:10.1517/14622416.5.4.433
-
(2004)
Pharmacogenomics
, vol.5
, pp. 433-438
-
-
Bennett, S.1
-
30
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
PubMed
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braveman MS, Chen YJ, Chen Z et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005; 437:326-327 PubMed
-
(2005)
Nature
, vol.437
, pp. 326-327
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braveman, M.S.8
Chen, Y.J.9
Chen, Z.10
-
31
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
PubMed doi:10.1101/gr.074492.107
-
Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 2008; 18:821-829. PubMed doi:10.1101/gr.074492.107
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
32
-
-
79551643756
-
Complete genome sequence of Kytococcus sedentarius type strain (541T)
-
doi:10.4056/sigs.761
-
Sims D, Brettin T, Detter JC, Han C, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, et al. Complete genome sequence of Kytococcus sedentarius type strain (541T). Stand Genomic Sci 2009; 1:12-20. doi:10.4056/sigs.761
-
(2009)
Stand Genomic Sci
, vol.1
, pp. 12-20
-
-
Sims, D.1
Brettin, T.2
Detter, J.C.3
Han, C.4
Lapidus, A.5
Copeland, A.6
Glavina del Rio, T.7
Nolan, M.8
Chen, F.9
Lucas, S.10
-
33
-
-
77952299957
-
Prodigal: Prokaryotic gene recognition and translation initiation site identifi-cation
-
doi:10.1186/1471-2105-11-119
-
Hyatt D, Chen GL, LoCascio PF, Land ML, Lari-mer FW, Hauser LJ. Prodigal: prokaryotic gene recognition and translation initiation site identifi-cation. BMC Bionformatics 2010 11:119. doi:10.1186/1471-2105-11-119
-
(2010)
BMC Bionformatics
, vol.11
, pp. 119
-
-
Hyatt, D.1
Chen, G.L.2
Locascio, P.F.3
Land, M.L.4
Lari-Mer, F.W.5
Hauser, L.J.6
-
34
-
-
77953023066
-
GenePRIMP: A Gene Prediction Improvement Pipeline for mi-crobial genomes
-
In press
-
Pati A, Ivanova N, Mikhailova N, Ovchinikova G, Hooper SD, Lykidis A, Kyrpides NC. GenePRIMP: A Gene Prediction Improvement Pipeline for mi-crobial genomes. Nat Methods (In press).
-
Nat Methods
-
-
Pati, A.1
Ivanova, N.2
Mikhailova, N.3
Ovchinikova, G.4
Hooper, S.D.5
Lykidis, A.6
Kyrpides, N.C.7
-
35
-
-
69949116874
-
IMGER: A system for microbial ge-nome annotation expert review and curation
-
PubMed doi:10.1093/bioinformatics/btp393
-
Markowitz VM, Ivanova NN, Chen IMA, Chu K, Kyrpides NC. IMGER: a system for microbial ge-nome annotation expert review and curation. Bio-informatics 2009; 25:2271-2278. PubMed doi:10.1093/bioinformatics/btp393
-
(2009)
Bio-informatics
, vol.25
, pp. 2271-2278
-
-
Markowitz, V.M.1
Ivanova, N.N.2
Chen, I.M.A.3
Chu, K.4
Kyrpides, N.C.5
-
36
-
-
0032982023
-
Crystal structure of the β-glycosidase from the hyperthermophile Thermosphaera aggregans: Insights into its activity and thermostability
-
PubMed doi:10.1016/S0014-5793(99)00090-3
-
Chi YI, Martinez-Cruz LA, Jancarik J, Swanson RV, Robertson DE, Kim SH. Crystal structure of the β-glycosidase from the hyperthermophile Thermosphaera aggregans: insights into its activity and thermostability. FEBS Lett 1999; 445:375-383. PubMed doi:10.1016/S0014-5793(99)00090-3
-
(1999)
FEBS Lett
, vol.445
, pp. 375-383
-
-
Chi, Y.I.1
Martinez-Cruz, L.A.2
Jancarik, J.3
Swanson, R.V.4
Robertson, D.E.5
Kim, S.H.6
-
37
-
-
34248596489
-
A comparative infrared spectroscopic study of glycoside hydrolases from extremophilic archaea revealed different molecu-lar mechanisms of adaptation to high tempera-tures
-
PubMed doi:10.1002/prot.21368
-
Ausili A, Cobucci-Ponzano B, Di Lauro B, D'Avi-no R, Perugino G, Bertoli E, Scire A, Rossi M, Tanfani F, Moracci M. A comparative infrared spectroscopic study of glycoside hydrolases from extremophilic archaea revealed different molecu-lar mechanisms of adaptation to high tempera-tures. Proteins 2007; 67:991-1001. PubMed doi:10.1002/prot.21368
-
(2007)
Proteins
, vol.67
, pp. 991-1001
-
-
Ausili, A.1
Cobucci-Ponzano, B.2
di Lauro, B.3
D'avi-No, R.4
Perugino, G.5
Bertoli, E.6
Scire, A.7
Rossi, M.8
Tanfani, F.9
Moracci, M.10
-
38
-
-
0030049834
-
Characterization of 2-ketoisovalerate ferredoxin oxidoreductase, a new and reversible coenzyme A dependent en-zyme involved in peptide fermentation by hyper-thermophilic archaea
-
PubMed
-
Heider J, Mai X, Adams MWW. Characterization of 2-ketoisovalerate ferredoxin oxidoreductase, a new and reversible coenzyme A dependent en-zyme involved in peptide fermentation by hyper-thermophilic archaea. J Bacteriol 1996; 178:780-787. PubMed
-
(1996)
J Bacteriol
, vol.178
, pp. 780-787
-
-
Heider, J.1
Mai, X.2
Adams, M.W.W.3
-
39
-
-
0030932016
-
Pyru-vate ferredoxin oxidoreductase from the hyper-thermophilic archaeon, Pyrococcus furiosus, functions as a CoA-dependent pyruvate decar-boxylase
-
PubMed doi:10.1073/pnas.94.18.9608
-
Ma K, Hutchins A, Sung SJ, Adams MWW. Pyru-vate ferredoxin oxidoreductase from the hyper-thermophilic archaeon, Pyrococcus furiosus, functions as a CoA-dependent pyruvate decar-boxylase. Proc Natl Acad Sci USA 1997; 94:9608-9613. PubMed doi:10.1073/pnas.94.18.9608
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 9608-9613
-
-
Ma, K.1
Hutchins, A.2
Sung, S.J.3
Adams, M.W.W.4
-
40
-
-
80053370338
-
Complete genome sequence of De-sulfohalobium retbaense type strain (HR100T)
-
doi:10.4056/sigs.581048
-
Spring S, Nolan M, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Land M, Chen F, et al. Complete genome sequence of De-sulfohalobium retbaense type strain (HR100T). Stand Genomic Sci 2010; 2:38-48. doi:10.4056/sigs.581048
-
(2010)
Stand Genomic Sci
, vol.2
, pp. 38-48
-
-
Spring, S.1
Nolan, M.2
Lapidus, A.3
Glavina del Rio, T.4
Copeland, A.5
Tice, H.6
Cheng, J.F.7
Lucas, S.8
Land, M.9
Chen, F.10
-
41
-
-
64049106942
-
Complete genome sequence of the anaerobic, peptide-fermenting hyperthermophilic crenarchaeon De-sulfurococcus kamchatkensis
-
PubMed doi:10.1128/JB.01525-08
-
Ravin NV, Mardanov AV, Beletsky AV, Kublanov IV, Kolganova TV, Lebedinsky AV, Chernyh NA, Bonch-Osmolovskaya EA, Skryabin KG. Complete genome sequence of the anaerobic, peptide-fermenting hyperthermophilic crenarchaeon De-sulfurococcus kamchatkensis. J Bacteriol 2009; 191:2371-2379. PubMed doi:10.1128/JB.01525-08
-
(2009)
J Bacteriol
, vol.191
, pp. 2371-2379
-
-
Ravin, N.V.1
Mardanov, A.V.2
Beletsky, A.V.3
Kublanov, I.V.4
Kolganova, T.V.5
Lebedinsky, A.V.6
Chernyh, N.A.7
Bonch-Osmolovskaya, E.A.8
Skryabin, K.G.9
-
42
-
-
0142138858
-
The unique features of glycolytic pathways in
-
PubMed doi:10.1042/BJ20021472
-
Verhees CH, Kengen SW, Tuininga JE, Schut GJ, Adams MW, De Vos WM, Van Der Oost J. The unique features of glycolytic pathways in Arc-haea. Biochem J 2003; 375:231-246. PubMed doi:10.1042/BJ20021472
-
(2003)
Arc-haea. Biochem J
, vol.375
, pp. 231-246
-
-
Verhees, C.H.1
Kengen, S.W.2
Tuininga, J.E.3
Schut, G.J.4
Adams, M.W.5
de Vos, W.M.6
van der Oost, J.7
-
43
-
-
0032513241
-
NAD+-dependent glyceraldehyde-3-phosphate dehydrogenase from Thermoproteus tenax. The first identified archaeal member of the aldehyde dehydrogenase superfamily is a glycolytic en-zyme with unusual regulatory properties
-
PubMed doi:10.1074/jbc.273.11.6149
-
Brunner NA, Brinkmann H, Siebers B, Hensel R. NAD+-dependent glyceraldehyde-3-phosphate dehydrogenase from Thermoproteus tenax. The first identified archaeal member of the aldehyde dehydrogenase superfamily is a glycolytic en-zyme with unusual regulatory properties. J Biol Chem 1998; 273:6149-6156. PubMed doi:10.1074/jbc.273.11.6149
-
(1998)
J Biol Chem
, vol.273
, pp. 6149-6156
-
-
Brunner, N.A.1
Brinkmann, H.2
Siebers, B.3
Hensel, R.4
-
44
-
-
34848840085
-
A novel ADP-forming succinyl-CoA synthetase in Ther-mococcus kodakaraensis structurally related to the archaeal nucleoside diphosphate-forming acetyl-CoA synthetases
-
PubMed doi:10.1074/jbc.M702694200
-
Shikata K, Fukui T, Atomi H, Imanaka T. A novel ADP-forming succinyl-CoA synthetase in Ther-mococcus kodakaraensis structurally related to the archaeal nucleoside diphosphate-forming acetyl-CoA synthetases. J Biol Chem 2007; 282:26963-26970.PubMed doi:10.1074/jbc.M702694200
-
(2007)
J Biol Chem
, vol.282
, pp. 26963-26970
-
-
Shikata, K.1
Fukui, T.2
Atomi, H.3
Imanaka, T.4
-
45
-
-
0037934657
-
A simple energy-conserving system: Proton reduction coupled to proton translocation
-
PubMed doi:10.1073/pnas.1331436100
-
Sapra R, Bagramyan K, Adams MWW. A simple energy-conserving system: proton reduction coupled to proton translocation. Proc Natl Acad Sci USA 2003; 100:7545-7550. PubMed doi:10.1073/pnas.1331436100
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 7545-7550
-
-
Sapra, R.1
Bagramyan, K.2
Adams, M.W.W.3
-
46
-
-
26444578862
-
The Mrp system: A giant among mono-valentcation/proton antiporters?
-
PubMed doi:10.1007/s00792-005-0451-6
-
Swartz TH, Ikewada S, Ishikawa O, Ito M, Krul-wich TA. The Mrp system: a giant among mono-valentcation/proton antiporters? Extremophiles 2005; 9:345-354. PubMed doi:10.1007/s00792-005-0451-6
-
(2005)
Extremophiles
, vol.9
, pp. 345-354
-
-
Swartz, T.H.1
Ikewada, S.2
Ishikawa, O.3
Ito, M.4
Krul-Wich, T.A.5
-
47
-
-
2142697116
-
Energy-converting [NiFe] hydroge-nases from Archaea and extremophiles: Ancestors of complex I
-
PubMed doi:10.1023/B:JOBB.0000019599.43969.33
-
Hedderich R. Energy-converting [NiFe] hydroge-nases from Archaea and extremophiles: ancestors of complex I. J Bioenerg Biomembr 2004; 36:65-75. PubMed doi:10.1023/B:JOBB.0000019599.43969.33
-
(2004)
J Bioenerg Biomembr
, vol.36
, pp. 65-75
-
-
Hedderich, R.1
-
48
-
-
34447629933
-
A so-dium ion dependent A1A0 ATP synthase from the hyperthermophilic archaeon Pyrococcus furiosus
-
PubMed doi:10.1111/j.1742-4658.2007.05925.x
-
Pisa KY, Huber H, Thomm M, Müller V. A so-dium ion dependent A1A0 ATP synthase from the hyperthermophilic archaeon Pyrococcus furiosus. FEBS J 2007; 274:3928-3938. PubMed doi:10.1111/j.1742-4658.2007.05925.x
-
(2007)
FEBS J
, vol.274
, pp. 3928-3938
-
-
Pisa, K.Y.1
Huber, H.2
Thomm, M.3
Müller, V.4
-
49
-
-
34250336912
-
Insights into the metabolism of elemental sulfur by the hyper-thermophilic archaeon Pyrococcus furiosus: Cha-racterization of a coenzyme A-dependent NAD(P)H sulfur oxidoreductase
-
PubMed doi:10.1128/JB.00031-07
-
Schut GJ, Bridger SL, Adams MW. Insights into the metabolism of elemental sulfur by the hyper-thermophilic archaeon Pyrococcus furiosus: cha-racterization of a coenzyme A-dependent NAD(P)H sulfur oxidoreductase. J Bacteriol 2007; 189:4431-4441. PubMed doi:10.1128/JB.00031-07
-
(2007)
J Bacteriol
, vol.189
, pp. 4431-4441
-
-
Schut, G.J.1
Bridger, S.L.2
Adams, M.W.3
-
50
-
-
45549098501
-
Formate hydrogenlyase in the hyper-thermophilic archaeon
-
PubMed doi:10.1186/1471-2180-8-88
-
Takács M, Tóth A, Bogos B, Varga A, Rákhely G, Kovács KL. Formate hydrogenlyase in the hyper-thermophilic archaeon, Thermococcus litoralis. BMC Microbiol 2008; 8:88. PubMed doi:10.1186/1471-2180-8-88
-
(2008)
Thermococcus Litoralis. BMC Microbiol
, vol.8
, pp. 88
-
-
Takács, M.1
Tóth, A.2
Bogos, B.3
Varga, A.4
Rákhely, G.5
Kovács, K.L.6
-
51
-
-
0037346631
-
An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssii
-
PubMed doi:10.1046/j.1365-2958.2003.03381.x
-
Cohen GN, Barbe V, Flament D, Galperin M, Heilig R, Lecompte O, Poch O, Prieur D, Quérellou J, Ripp R, et al. An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssii. Mol Microbiol 2003; 47:1495-1512. PubMed doi:10.1046/j.1365-2958.2003.03381.x
-
(2003)
Mol Microbiol
, vol.47
, pp. 1495-1512
-
-
Cohen, G.N.1
Barbe, V.2
Flament, D.3
Galperin, M.4
Heilig, R.5
Lecompte, O.6
Poch, O.7
Prieur, D.8
Quérellou, J.9
Ripp, R.10
-
52
-
-
0036550477
-
Evolutionary analyses of the small subunit of glutamate synthase: Gene or-der conservation, gene fusions, and prokaryote-to-eukaryote lateral gene transfers
-
PubMed doi:10.1128/EC.1.2.304-310.2002
-
Andersson JO, Roger AJ. Evolutionary analyses of the small subunit of glutamate synthase: gene or-der conservation, gene fusions, and prokaryote-to-eukaryote lateral gene transfers. Eukaryot Cell 2002; 1:304-310. PubMed doi:10.1128/EC.1.2.304-310.2002
-
(2002)
Eukaryot Cell
, vol.1
, pp. 304-310
-
-
Andersson, J.O.1
Roger, A.J.2
-
53
-
-
0027163125
-
Hy-drogenase of the hyperthermophile Pyrococcus furiosus is an elemental sulfur reductase or sulf-hydrogenase: Evidence for a sulfur-reducing hy-drogenase ancestor
-
PubMed doi:10.1073/pnas.90.11.5341
-
Ma K, Schicho RN, Kelly RM, Adams MW. Hy-drogenase of the hyperthermophile Pyrococcus furiosus is an elemental sulfur reductase or sulf-hydrogenase: evidence for a sulfur-reducing hy-drogenase ancestor. Proc Natl Acad Sci USA 1993; 90:5341-5344. PubMed doi:10.1073/pnas.90.11.5341
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 5341-5344
-
-
Ma, K.1
Schicho, R.N.2
Kelly, R.M.3
Adams, M.W.4
|