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Volumn 1, Issue 1, 2009, Pages 12-20

Complete genome sequence of Kytococcus sedentarius type strain (541 T)

(32)  Sims, David a   Brettin, Thomas a,b   Detter, John C a   Han, Cliff a   Lapidus, Alla b   Copeland, Alex b   del Rio, Tijana Glavina b   Nolan, Matt b   Chen, Feng a   Lucas, Susan b   Tice, Hope b   Cheng, Jan Fang b   Bruce, David a   Goodwin, Lynne a   Pitluck, Sam b   Ovchinnikova, Galina b   Pati, Amrita b   Ivanova, Natalia b   Mavromatis, Konstantinos b   Chen, Amy c   more..


Author keywords

Aerobic; Dermacocca ceae; Free living; Marine; Mesophile; Opportunistic pathogenic

Indexed keywords

ACTINOBACTERIA; ARCHAEA; BACTERIA (MICROORGANISMS); DERMACOCCACEAE; KYTOCOCCUS SEDENTARIUS; MICROCOCCINEAE; POSIBACTERIA;

EID: 79551643756     PISSN: 19443277     EISSN: None     Source Type: Journal    
DOI: 10.4056/sigs.761     Document Type: Article
Times cited : (100)

References (35)
  • 1
    • 0028883728 scopus 로고
    • Taxonomic dissection of the genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., Dermacoccus gen. nov., and Micrococcus Cohn 1872 gen. emend
    • PMID:7547287 doi:10.1099/00207713-45-4-682
    • Stackebrandt E, Koch C, Gvozdiak O, Schumann P. Taxonomic dissection of the genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., Dermacoccus gen. nov., and Micrococcus Cohn 1872 gen. emend. Int J Syst Bacteriol 1995; 45:682-692 PMID:7547287 doi:10.1099/00207713-45-4-682
    • (1995) Int J Syst Bacteriol , vol.45 , pp. 682-692
    • Stackebrandt, E.1    Koch, C.2    Gvozdiak, O.3    Schumann, P.4
  • 2
    • 0000782587 scopus 로고
    • A list of marine bacteria including descriptions of sixty new species
    • ZoBell CE, Upham HC. A list of marine bacteria including descriptions of sixty new species. Bull Scripps Inst Oceanogr Calif 1944; 5:239-292
    • (1944) Bull Scripps Inst Oceanogr Calif , vol.5 , pp. 239-292
    • Zobell, C.E.1    Upham, H.C.2
  • 4
    • 10444276630 scopus 로고    scopus 로고
    • Bacterial diversity in a nonsaline alkaline environment: Heterotrophic aerobic populations
    • MID:15574939 doi:10.1128/AEM.70.12.73787387.2004
    • Tiago I, Chung AP, Verissimo A. Bacterial diversity in a nonsaline alkaline environment: heterotrophic aerobic populations. Appl Environ Microbiol 2004; 70:7378 MID:15574939 doi:10.1128/AEM.70.12.73787387.2004
    • (2004) Appl Environ Microbiol , vol.70 , pp. 7378
    • Tiago, I.1    Chung, A.P.2    Verissimo, A.3
  • 5
    • 33746790616 scopus 로고    scopus 로고
    • The study of antagonistic interactions among pelagic bacteria: A promising way to coin environmental friendly antifouling compounds
    • doi:10.1007/s10750-006-0220-2
    • Bhattarai HD, Lee YK, Cho KH, Lee HK, Shin HE. The study of antagonistic interactions among pelagic bacteria: a promising way to coin environmental friendly antifouling compounds. Hydrobiologica 2006; 568:417-423 doi:10.1007/s10750-006-0220-2
    • (2006) Hydrobiologica , vol.568 , pp. 417-423
    • Bhattarai, H.D.1    Lee, Y.K.2    Cho, K.H.3    Lee, H.K.4    Shin, H.E.5
  • 6
    • 34249744449 scopus 로고    scopus 로고
    • Phylogenetic diversity of gram-positive bacteria cultured from marine sediments
    • MID:17400789 doi:10.1128/AEM.02811-06
    • Gontang EA, Fenical W, Jensen PR. Phylogenetic diversity of gram-positive bacteria cultured from marine sediments. Appl Environ Microbiol 2007; 73:3272 MID:17400789 doi:10.1128/AEM.02811-06
    • (2007) Appl Environ Microbiol , vol.73 , pp. 3272
    • Gontang, E.A.1    Fenical, W.2    Jensen, P.R.3
  • 7
    • 43449125604 scopus 로고    scopus 로고
    • Microbial burden and diversity of commercial airline cabin air during short and long durations of travel
    • PMID:18256704 doi:10.1038/ismej.2008.1 MID:18256704 doi:10.1038/ismej.2008.11
    • Osman S, La Duc MT, Dekas A, Newcombe D, Venkateswaran K. Microbial burden and diversity of commercial airline cabin air during short and long durations of travel. ISME J 2008; 2:482-497 PMID:18256704 doi:10.1038/ismej.2008.1 MID:18256704 doi:10.1038/ismej.2008.11
    • (2008) ISME J , vol.2 , pp. 482-497
    • Osman, S.1    la Duc, M.T.2    Dekas, A.3    Newcombe, D.4    Venkateswaran, K.5
  • 8
    • 34547913065 scopus 로고    scopus 로고
    • Degradation of arylarsenic compounds by microorganisms
    • MID:17697081 doi:10.1111/j.15746968.2007.00835.x
    • Nakamiya K, Nakayama T, Ito H, Edmonds JS, Shibata Y, Morita M. Degradation of arylarsenic compounds by microorganisms. FEMS Microbiol. Lett 2007; 274:184 MID:17697081 doi:10.1111/j.15746968.2007.00835.x
    • (2007) FEMS Microbiol. Lett , vol.274 , pp. 184
    • Nakamiya, K.1    Nakayama, T.2    Ito, H.3    Edmonds, J.S.4    Shibata, Y.5    Morita, M.6
  • 9
    • 0032418451 scopus 로고    scopus 로고
    • Kytococcus sedentarius (formerly Micrococcus sedentarius) and Dermacoccus nishinomiyaensis (formerly Micrococcus nishinomiyaensis) produce monensins, typical Streptomyces cinnamonensis metabolites
    • MID:9933918 doi:10.1139/cjm-44-10-1007
    • Pospisil S, Benada O, Kofronova O, Petricek M, Janda L, Havlicek V. Kytococcus sedentarius (formerly Micrococcus sedentarius) and Dermacoccus nishinomiyaensis (formerly Micrococcus nishinomiyaensis) produce monensins, typical Streptomyces cinnamonensis metabolites. Can J Microbiol 1998; 44:1007 MID:9933918 doi:10.1139/cjm-44-10-1007
    • (1998) Can J Microbiol , vol.44 , pp. 1007
    • Pospisil, S.1    Benada, O.2    Kofronova, O.3    Petricek, M.4    Janda, L.5    Havlicek, V.6
  • 10
    • 0036428577 scopus 로고    scopus 로고
    • Kytococcus sedentarius, the organism associated with pitted keratolysis, produces two keratin-degrading enzymes
    • MID:12392527 doi:10.1046/j.13652672.2002.01742.x
    • Longshaw CM, Wright JD, Farrell AM, Holland KT. Kytococcus sedentarius, the organism associated with pitted keratolysis, produces two keratin-degrading enzymes. J Appl Microbiol 2002; 93:810 MID:12392527 doi:10.1046/j.13652672.2002.01742.x
    • (2002) J Appl Microbiol , vol.93 , pp. 810
    • Longshaw, C.M.1    Wright, J.D.2    Farrell, A.M.3    Holland, K.T.4
  • 11
    • 3042816930 scopus 로고    scopus 로고
    • Fatal hemorrhagic pneumonia caused by infection due to Kytococcus sedentarius--a pathogen or passenger?
    • MID:14689234 doi:10.1007/s00277-003-0831x
    • Levenga H, Donnelly P, Blijlevens N, Verweij P, Shirango H, de Pauw B. Fatal hemorrhagic pneumonia caused by infection due to Kytococcus sedentarius--a pathogen or passenger? Ann Hematol 2004; 83:447 MID:14689234 doi:10.1007/s00277-003-0831x
    • (2004) Ann Hematol , vol.83 , pp. 447
    • Levenga, H.1    Donnelly, P.2    Blijlevens, N.3    Verweij, P.4    Shirango, H.5    de Pauw, B.6
  • 12
    • 0036203448 scopus 로고    scopus 로고
    • Multiple sequence alignment using partial order graphs
    • PMID:11934745 doi:10.1093/bioinformatics/18.3.452
    • Lee C, Grasso C, Sharlow MF. Multiple sequence alignment using partial order graphs. Bioinformatics 2002; 18:452-464 PMID:11934745 doi:10.1093/bioinformatics/18.3.452
    • (2002) Bioinformatics , vol.18 , pp. 452-464
    • Lee, C.1    Grasso, C.2    Sharlow, M.F.3
  • 13
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • MID:7288891 doi:10.1007/BF01734359
    • Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981; 17:368 MID:7288891 doi:10.1007/BF01734359
    • (1981) J Mol Evol , vol.17 , pp. 368
    • Felsenstein, J.1
  • 14
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML Web servers
    • MID:18853362 doi:10.1080/10635150802429642
    • Stamatakis A, Hoover P, Rougemont J. A rapid bootstrap algorithm for the RAxML Web servers. Syst Biol 2008; 57:758 MID:18853362 doi:10.1080/10635150802429642
    • (2008) Syst Biol , vol.57 , pp. 758
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 15
    • 38549144166 scopus 로고    scopus 로고
    • The Genomes On Line Database (GOLD) in 2007: Status of genomic and metage nomic projects and their associated metadata
    • PMID:17981842 doi:10.1093/nar/gkm884
    • Liolios K, Mavromatis K, Tavernarakis N, Kyrpides NC. The Genomes On Line Database (GOLD) in 2007: status of genomic and metage nomic projects and their associated metadata. Nucleic Acids Res 2008; 36:D475-479 PMID:17981842 doi:10.1093/nar/gkm884
    • (2008) Nucleic Acids Res , vol.36
    • Liolios, K.1    Mavromatis, K.2    Tavernarakis, N.3    Kyrpides, N.C.4
  • 17
    • 0030893495 scopus 로고    scopus 로고
    • Proposal for a new hierarchic classification system, Actinobacteria classis nov
    • doi:10.1099/00207713-47-2479
    • Stackebrandt E, Rainey F, Ward-Rainey N. Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 1997; 47:479-491 doi:10.1099/00207713-47-2479
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 479-491
    • Stackebrandt, E.1    Rainey, F.2    Ward-Rainey, N.3
  • 18
    • 0009485636 scopus 로고
    • Studies in the Nomenclature and Classification of the Bacteria: VIII. The Sub-groups and Genera of the Actinomycetales
    • PMID:16558803
    • Buchanan RE. Studies in the Nomenclature and Classification of the Bacteria: VIII. The Sub-groups and Genera of the Actinomycetales. J Bacteriol 1918; 3:403-406 PMID:16558803
    • (1918) J Bacteriol , vol.3 , pp. 403-406
    • Buchanan, R.E.1
  • 19
    • 0034029213 scopus 로고    scopus 로고
    • Description of Bogoriellaceae fam. nov., Dermacoccaceae fam. nov., Rarobacteraceae fam. nov. and Sanguibacteraceae fam. nov. and emendation of some families of the suborder Micrococcineae
    • PMID:10843073
    • Stackebrandt E, Schumann P. Description of Bogoriellaceae fam. nov., Dermacoccaceae fam. nov., Rarobacteraceae fam. nov. and Sanguibacteraceae fam. nov. and emendation of some families of the suborder Micrococcineae. Int J Syst Evol Microbiol 2000; 50:1279-1285 PMID:10843073
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 1279-1285
    • Stackebrandt, E.1    Schumann, P.2
  • 20
    • 84860920806 scopus 로고    scopus 로고
    • Anonymous. Biological Agents: Technical rules for biological agents
    • Anonymous. Biological Agents: Technical rules for biological agents.
  • 22
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • MID:9521922 doi: 10.1101/gr.8.3.186
    • Ewing B, Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 1998; 8:186 MID:9521922 doi: 10.1101/gr.8.3.186
    • (1998) Genome Res , vol.8 , pp. 186
    • Ewing, B.1    Green, P.2
  • 23
    • 0031955518 scopus 로고    scopus 로고
    • Basecalling of automated sequencer traces using phred. I. Accuracy assessment
    • PMID:9521921 doi:10.1101/gr.8.3.175
    • Ewing B, Hillier L, Wendl MC, Green P. Basecalling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 1998; 8:175-185 PMID:9521921 doi:10.1101/gr.8.3.175
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 24
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • PMID:9521923 doi:10.1101/gr.8.3.195
    • Gordon D, Abajian C, Green P. Consed: a graphical tool for sequence finishing. Genome Res 1998; 8:195-202 PMID:9521923 doi:10.1101/gr.8.3.195
    • (1998) Genome Res , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 25
    • 80053349651 scopus 로고    scopus 로고
    • In: Arabnia AR, Valafar H, editors. Proceedings of the 2006 international conference on bioinformatics & computational biology, June 26-29. CSREA Press
    • Han CS, Chain P. Finishing repeat regions automatically with Dupfinisher CSREA Press. In: Arabnia AR, Valafar H, editors. Proceedings of the 2006 international conference on bioinformatics & computational biology; 2006 June 26-29. CSREA Press. p 141-146
    • (2006) Finishing Repeat Regions Automatically With Dupfinisher CSREA Press , pp. 141-146
    • Han, C.S.1    Chain, P.2
  • 26
    • 0035875343 scopus 로고    scopus 로고
    • GeneMarkS: A self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
    • PMID:11410670 doi:10.1093/nar/29.12.2607
    • Besemer J, Lomsadze A, Borodovsky M. GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucleic Acids Res 2001; 29:2607-2618 PMID:11410670 doi:10.1093/nar/29.12.2607
    • (2001) Nucleic Acids Res , vol.29 , pp. 2607-2618
    • Besemer, J.1    Lomsadze, A.2    Borodovsky, M.3
  • 28
    • 80054015109 scopus 로고    scopus 로고
    • GenePRIMP: A Gene Prediction Improvement Pipeline for microbial genomes (In preparation
    • Pati A. GenePRIMP: A Gene Prediction Improvement Pipeline for microbial genomes (In preparation 2009)
    • (2009)
    • Pati, A.1
  • 29
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • MID:9023104 doi:10.1093/nar/25.5.955
    • Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997; 25:955 MID:9023104 doi:10.1093/nar/25.5.955
    • (1997) Nucleic Acids Res , vol.25 , pp. 955
    • Lowe, T.M.1    Eddy, S.R.2
  • 30
    • 34250665888 scopus 로고    scopus 로고
    • RNAmmer: Consistent and rapid annotation of ribosomal RNA genes
    • PMID:17452365 doi:10.1093/nar/gkm160
    • Lagesen K, Hallin P, Rodland EA, Staerfeldt HH, Rognes T, Ussery DW. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 2007; 35:3100-3108 PMID:17452365 doi:10.1093/nar/gkm160
    • (2007) Nucleic Acids Res , vol.35 , pp. 3100-3108
    • Lagesen, K.1    Hallin, P.2    Rodland, E.A.3    Staerfeldt, H.H.4    Rognes, T.5    Ussery, D.W.6
  • 33
    • 11244328060 scopus 로고    scopus 로고
    • The pathway tools software
    • PMID: 12169551
    • Karp P, Paley S, Romero P. The pathway tools software. Bioinformatics 2002; 18 Suppl1:S225-232 PMID: 12169551
    • (2002) Bioinformatics , vol.18 , Issue.1 SUPPL.
    • Karp, P.1    Paley, S.2    Romero, P.3


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