Desulfurococcus kamchatkensis sp. nov., a novel hyperthermophilic protein-degrading archaeon isolated from a Kamchatka hot spring

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 7, 2009, Pages 1743-1747

  Kublanov, I V ^a   Bidjieva, S Kh ^a   Mardanov, A V ^b   Bonch Osmolovskaya, E A ^a  

^a WINOGRADSKY INSTITUTE OF MICROBIOLOGY   (Russian Federation)

^b INSTITUTE OF BIOENGINEERING   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

ALBUMIN; ALPHA KERATIN; BACTERIAL DNA; GELATIN; KERATIN; PROTEINASE; RNA 16S; SULFUR; UNCLASSIFIED DRUG; ARCHAEAL DNA; PROTEIN;

ANAEROBIC BACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIAL MEMBRANE; BACTERIAL METABOLISM; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CONTROLLED STUDY; DESULFUROCOCCUS; DESULFUROCOCCUS AMYLOLYTICUS; DESULFUROCOCCUS KAMCHATKENSIS; DNA CONTENT; ENZYME SYNTHESIS; FERMENTATION; HYPERTHERMOPHILIC ARCHAEON; MICROBIAL MORPHOLOGY; MOLECULAR PHYLOGENY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; ORGANOTROPH; PH; PRIORITY JOURNAL; PROTEIN DEGRADATION; RUSSIAN FEDERATION; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; TEMPERATURE; THERMAL SPRING; TYPE STRAIN; ANAEROBIC GROWTH; CLASSIFICATION; DESULFUROCOCCACEAE; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; GENOTYPE; HEAT; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; PHYSIOLOGY; RNA GENE; SPECIES DIFFERENCE;

ARCHAEA; DESULFUROCOCCUS; DESULFUROCOCCUS AMYLOLYTICUS;

ANAEROBIOSIS; BASE COMPOSITION; DESULFUROCOCCACEAE; DNA, ARCHAEAL; GENES, RRNA; GENOTYPE; HOT SPRINGS; HOT TEMPERATURE; KERATINS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; PROTEINS; RNA, RIBOSOMAL, 16S; RUSSIA; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

EID: 69449091329     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.006726-0     Document Type: Article

References (31)

1. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
2. Amend, J. P., Meyer-Dombard, D. R., Sheth, S. N., Zolotova, N. & Amend, A. C. (2003). Palaeococcus helgesonii sp. nov., a facultatively anaerobic, hyperthermophilic archaeon from a geothermal well on Vulcano Island, Italy. Arch Microbiol 179, 394-401.
3. Arai, K., Naito, S., Dang, V. B., Nagasawa, N. & Hirano, M. (1996). Crosslinking structure of keratin. VI. Number, type, and location of disulfide crosslinkages in low-sulfur protein of wool fiber and their relation to permanent set. J Appl Polym Sci 60, 169-179.
4. Bonch-Osmolovskaya, E. A., Slesarev, A. I., Miroshnichenko, M. L., Svetlichnaya, T. P. & Alekseev, V. A. (1988). Characteristics of Desulfurococcus amylolyticus sp. nov. - a new extremely thermophilic archaebacterium isolated from thermal springs of Kamchatka and Kunashir Island. Microbiology (English translation of Mikrobiologiia) 57, 78-85.
5. Bonch-Osmolovskaya, E. A., Sokolova, T. G., Kostrikina, N. A. & Zavarzin, G. A. (1990). Desulfurella acetivorans gen. nov., sp. nov. - a new thermophilic sulfur-reducing eubacterium. Arch Microbiol 153, 151-155.
6. Cowan, D. A., Smolenski, K. A., Daniel, R. M. & Morgan, H. W. (1987). An extremely thermostable extracellular proteinase from a strain of the archaebacterium Desulfurococcus growing at 88 degrees C. Biochem J 247, 121-133.
7. Dib, R., Chobert, J.-M., Dalgalarrondo, M., Barbier, G. & Haertlé, T. (1998). Purification, molecular properties and specificity of a thermoactive and thermostable proteinase from Pyrococcus abyssi, strain st 549, hyperthermophilic archaea from deep-sea hydrothermal ecosystem. FEBS Lett 431, 279-284.
8. Eggen, R., Geerling, A., Watts, J. & De Vos, W. M. (1990). Characterization of pyrolysin, a hyperthermoactive serine protease from the archaebacterium Pyrococcus furiosus. FEMS Microbiol Lett 71, 17-20.
9. Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39, 783-791.
10. Friedrich, A. B. & Antranikian, G. (1996). Keratin degradation by Fervidobacterium pennavorans, a novel thermophilic anaerobic species of the order Thermotogales. Appl Environ Microbiol 62, 2875-2882.
11. Fusek, M., Lin, X. & Tang, J. (1990). Enzymatic properties of thermopsin. J Biol Chem 265, 1496-1501.
12. Gonzalez, J. M., Masuchi, Y., Robb, F. T., Ammerman, J. W., Maeder, D. L., Yanagibayashi, M., Tamaoka, J. & Kato, C. (1998). Pyrococcus horikoshii sp. nov., a hyperthermophilic archaeon isolated from a hydrothermal vent at the Okinawa Trough. Extremophiles 2, 123-130.
13. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
14. Kevbrin, V. V. & Zavarzin, G. A. (1992). The effect of sulfur compounds on growth of halophilic homoacetic bacterium Acetohalobium arabaticum. Microbiology (English translation of Mikrobiologiia) 61, 812-817.
15. Klingeberg, M., Galunsky, B., Sjoholm, C., Kasche, V. & Antranikian, G. (1995). Purification and properties of high thermostable, sodium dodecyl sulfate-resistant and stereospecific proteinase from extremely thermophilic archaeon Thermococcus stetteri. Appl Environ Microbiol 61, 3098-3104.
16. Lin, X. & Tang, J. (1990). Purification, characterization, and gene cloning of thermopsin, a thermostable acid protease from Sulfolobus acidocaldarius. J Biol Chem 265, 1490-1495.
17. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
18. Miroshnichenko, M. L., Kublanov, I. V., Kostrikina, N. A., Tourova, T. P., Kolganova, T. V., Birkeland, N. K. & Bonch-Osmolovskaya, E. A. (2008). Caldicellulosiruptor kronotskyensis sp. nov. and Caldicellulosiruptor hydrothermalis sp. nov., two novel extremely thermophilic cellulolytic anaerobic bacteria from Kamchatka thermal springs. Int J Syst Evol Microbiol 58, 1492-1496.
19. Park, D. (2007). Genomic DNA Isolation from different biological materials. In Methods in Molecular Biology, vol. 353: Protocols for Nucleic Acid Analysis by Nonradioactive Probes, 2nd edn, pp. 3-13. Edited by E. Hilario & J. Mackay. Totowa, NJ: Humana Press.
20. Perevalova, A. A., Svetlichny, V. A., Kublanov, I. V., Chernyh, N. A., Kostrikina, N. A., Tourova, T. P., Kuznetsov, B. B. & Bonch-Osmolovskaya, E. A. (2005). Desulfurococcus fermentans sp. nov., a novel hyperthermophilic archaeon from a Kamchatka hot spring, and emended description of the genus Desulfurococcus. Int J Syst Evol Microbiol 55, 995-999.
21. Riessen, S. & Antranikian, G. (2001). Isolation of Thermoanaerobacter keratinophilus sp. nov., a novel thermophilic, anaerobic bacterium with keratinolytic activity. Extremophiles 5, 399-408.
22. Saitou, N. & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
23. Slobodkin, A. I. & Bonch-Osmolovskaya, E. A. (1994). Growth and formation of metabolic products by extremely thermophilic archaea of the genus Desulfurococcus in the presence and absence of elemental sulfur. Microbiology (English translation of Mikrobiologiia) 63, 552-554.
24. Sokolova, T. G., Kostrikina, N. A., Chernyh, N. A., Tourova, T. P., Kolganova, T. V. & Bonch-Osmolovskaya, E. A. (2002). Carboxydocella thermautotrophica gen. nov., sp. nov., a novel anaerobic, CO-utilizing thermophile from a Kamchatkan hot spring. Int J Syst Evol Microbiol 52, 1961-1967.
25. Takai, K., Sugai, A., Itoh, T. & Horikoshi, K. (2000). Palaeococcus ferrophilus gen. nov., sp. nov., a barophilic, hyperthermophilic archaeon from deep-sea hydrothermal vent chimney. Int J Syst Evol Microbiol 50, 489-500.
26. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA 4: Molecular Evolutionary Genetics Analysis (MEGA software version 4.0. Mol Biol Evol 24, 1596-1599.
27. Trüper, H. G. & Schlegel, H. G. (1964). Sulfur metabolism in Thiorhodaceae. I. Quantitative measurements on growing cells of Chromatium okenii. Antonie van Leeuwenhoek 30, 225-228.
28. Tsiroulnikov, K., Rezai, H., Bonch-Osmolovskaya, E., Nedkov, P., Gousterova, A., Cueff, V., Godfroy, A., Barbier, G., Métro, F. & other authors (2004). Hydrolysis of the amyloid prion protein and nonpathogenic meat and bone meal by anaerobic thermophilic prokaryotes and Streptomyces subspecies. J Agric Food Chem 52, 6353-6360.
29. Vieille, C. & Zeikus, G. J. (2001). Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability. Microbiol Mol Biol Rev 65, 1-43.
30. Völkl, P., Markiewicz, P., Stetter, K. O. & Miller, J. H. (1994). The sequence of subtilisin-type protease (aerolysin) from the hyperthermophilic archaeum Pyrobaculum aerophilum reveals sites important to thermostability. Protein Sci 3, 1329-1340.
31. Zillig, W., Stetter, K. O., Prangishvilli, D., Schäfer, W., Wunderl, S., Janekovic, D., Holz, I. & Palm, P. (1982). Desulfurococcaceae, the second family of the extremely thermophilic, anaerobic, sulfur-respiring Thermoproteales. Zentralbl Bakteriol Hyg Abt Orig C 3, 304-317.