메뉴 건너뛰기




Volumn 48, Issue , 2010, Pages 25-43

Spatial epigenetics: Linking nuclear structure and function in higher eukaryotes

Author keywords

[No Author keywords available]

Indexed keywords

EUKARYOTA;

EID: 79952108150     PISSN: 00711365     EISSN: None     Source Type: Journal    
DOI: 10.1042/BSE0480025     Document Type: Article
Times cited : (6)

References (63)
  • 1
    • 50849139175 scopus 로고    scopus 로고
    • Gene regulatory networks directing myeloid and lymphoid cell fates within the immune system
    • Laslo, P., Pongubala, J.M., Lancki, D.W. and Singh, H. (2008) Gene regulatory networks directing myeloid and lymphoid cell fates within the immune system. Semin. Immunol. 20, 228-235
    • (2008) Semin. Immunol. , vol.20 , pp. 228-235
    • Laslo, P.1    Pongubala, J.M.2    Lancki, D.W.3    Singh, H.4
  • 2
    • 0031044215 scopus 로고    scopus 로고
    • Viable offspring derived from fetal and adult mammalian cells
    • Wilmut, A., Schnieke, A.E., McWhir, J., Kind, A.J. and Campbell, K.H. (1997) Viable offspring derived from fetal and adult mammalian cells. Nature 385, 810-813
    • (1997) Nature , vol.385 , pp. 810-813
    • Wilmut, A.1    Schnieke, A.E.2    McWhir, J.3    Kind, A.J.4    Campbell, K.H.5
  • 3
    • 0037013153 scopus 로고    scopus 로고
    • Specificity of gene regulation
    • Emerson, B.M. (2002) Specificity of gene regulation. Cell 109, 267-270
    • (2002) Cell , vol.109 , pp. 267-270
    • Emerson, B.M.1
  • 4
    • 0037041395 scopus 로고    scopus 로고
    • An extensive network of coupling among gene expression machines
    • Maniatis, T. and Reed, R. (2002) An extensive network of coupling among gene expression machines. Nature 416, 499-506
    • (2002) Nature , vol.416 , pp. 499-506
    • Maniatis, T.1    Reed, R.2
  • 6
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • Jenuwein, T. and Allis, C.D. (2001) Translating the histone code. Science 293, 1074-1080
    • (2001) Science , vol.293 , pp. 1074-1080
    • Jenuwein, T.1    Allis, C.D.2
  • 7
    • 34249299791 scopus 로고    scopus 로고
    • The complex language of chromatin regulation during transcription
    • Berger, S.L. (2007) The complex language of chromatin regulation during transcription. Nature 447, 407-412
    • (2007) Nature , vol.447 , pp. 407-412
    • Berger, S.L.1
  • 9
    • 0033153298 scopus 로고    scopus 로고
    • Structure and function of the nucleolus
    • Scheer, U. and Hock, R. (1999) Structure and function of the nucleolus. Curr. Opin. Cell Biol. 11, 385-390
    • (1999) Curr. Opin. Cell Biol. , vol.11 , pp. 385-390
    • Scheer, U.1    Hock, R.2
  • 11
    • 0027135889 scopus 로고
    • Macromolecular domains within the cell nucleus
    • Spector, D.L. (1993) Macromolecular domains within the cell nucleus. Annu. Rev. Cell Biol. 9, 265-315
    • (1993) Annu. Rev. Cell Biol. , vol.9 , pp. 265-315
    • Spector, D.L.1
  • 12
    • 0041669439 scopus 로고    scopus 로고
    • Nuclear speckles: A model for nuclear organelles
    • Lamond, A.I. and Spector, D.L. (2003). Nuclear speckles: a model for nuclear organelles. Nat. Rev. Mol. Cell Biol. 4, 605-612
    • (2003) Nat. Rev. Mol. Cell Biol. , vol.4 , pp. 605-612
    • Lamond, A.I.1    Spector, D.L.2
  • 13
    • 0027499230 scopus 로고
    • Visualization of focal sites of transcription within human nuclei
    • Jackson, D.A., Hassan, A.B., Errington, R.J. and Cook, P.R. (1993) Visualization of focal sites of transcription within human nuclei. EMBO J. 12, 1059-1065
    • (1993) EMBO J. , vol.12 , pp. 1059-1065
    • Jackson, D.A.1    Hassan, A.B.2    Errington, R.J.3    Cook, P.R.4
  • 14
    • 0031813779 scopus 로고    scopus 로고
    • Numbers and organization of RNA polymerases, nascent transcripts, and transcription units in HeLa nuclei
    • Jackson, D.A., Iborra, F.J., Manders, E.M. and Cook, P.R. (1998) Numbers and organization of RNA polymerases, nascent transcripts, and transcription units in HeLa nuclei. Mol. Biol. Cell 9, 1523-1536
    • (1998) Mol. Biol. Cell , vol.9 , pp. 1523-1536
    • Jackson, D.A.1    Iborra, F.J.2    Manders, E.M.3    Cook, P.R.4
  • 15
    • 0033561153 scopus 로고    scopus 로고
    • Regional specialization in human nuclei: Visualization of discrete sites of transcription by RNA polymerase III
    • Pombo, A., Jackson, D.A., Hollinshead, M., Wang, Z., Roeder, R.G. and Cook, P.R. (1999) Regional specialization in human nuclei: visualization of discrete sites of transcription by RNA polymerase III. EMBO J. 18, 2241-2253
    • (1999) EMBO J. , vol.18 , pp. 2241-2253
    • Pombo, A.1    Jackson, D.A.2    Hollinshead, M.3    Wang, Z.4    Roeder, R.G.5    Cook, P.R.6
  • 16
    • 0035985190 scopus 로고    scopus 로고
    • Recruitment of dioxin receptor to active transcription sites
    • Elbi, C., Misteli, T. and Hager, G.L. (2002) Recruitment of dioxin receptor to active transcription sites. Mol. Biol. Cell 13, 2001-2015
    • (2002) Mol. Biol. Cell , vol.13 , pp. 2001-2015
    • Elbi, C.1    Misteli, T.2    Hager, G.L.3
  • 17
    • 0033546210 scopus 로고    scopus 로고
    • The organization of replication and transcription
    • Cook, P.R. (1999) The organization of replication and transcription. Science 284, 1790-1795
    • (1999) Science , vol.284 , pp. 1790-1795
    • Cook, P.R.1
  • 18
    • 70450222694 scopus 로고    scopus 로고
    • A model for all genomes: The role of transcription factories
    • Cook, P.R. (2010) A model for all genomes: the role of transcription factories. J. Mol. Biol. 395, 1-10
    • (2010) J. Mol. Biol. , vol.395 , pp. 1-10
    • Cook, P.R.1
  • 19
    • 0037182588 scopus 로고    scopus 로고
    • Ribosomal genes in focus: New transcripts label the dense fibrillar components and form clusters indicative of "christmas trees" in situ
    • Koberna. K., Malinsky, J., Pliss, A., Masata, M., Vecerova, J., Fialova, M., Bednar, J. and Raska, I. (2002) Ribosomal genes in focus: new transcripts label the dense fibrillar components and form clusters indicative of "Christmas trees" in situ. J. Cell Biol. 157, 743-748
    • (2002) J. Cell Biol. , vol.157 , pp. 743-748
    • Koberna, K.1    Malinsky, J.2    Pliss, A.3    Masata, M.4    Vecerova, J.5    Fialova, M.6    Bednar, J.7    Raska, I.8
  • 21
    • 0035889085 scopus 로고    scopus 로고
    • The concept of self-organization in cellular architecture
    • Misteli, T. (2001) The concept of self-organization in cellular architecture. J. Cell Biol. 155, 181-185
    • (2001) J. Cell Biol. , vol.155 , pp. 181-185
    • Misteli, T.1
  • 22
    • 33847077659 scopus 로고    scopus 로고
    • Beyond the sequence: Cellular organization of genome function
    • Misteli, T. (2007). Beyond the sequence: cellular organization of genome function. Cell 128, 787-800
    • (2007) Cell , vol.128 , pp. 787-800
    • Misteli, T.1
  • 24
    • 34249307315 scopus 로고    scopus 로고
    • Nuclear organization of the genome and the potential for gene regulation
    • Fraser, P. and Bickmore, W. (2007) Nuclear organization of the genome and the potential for gene regulation. Nature 447, 413-417
    • (2007) Nature , vol.447 , pp. 413-417
    • Fraser, P.1    Bickmore, W.2
  • 25
    • 0037023361 scopus 로고    scopus 로고
    • Subnuclear compartmentalization of immunoglobulin loci during lymphocyte development
    • Kosak, S.T., Skok, J.A., Medina, K.L., Riblet, R., Le Beau, M.M., Fisher, A.G. and Singh, H. (2002) Subnuclear compartmentalization of immunoglobulin loci during lymphocyte development. Science 296, 158-162
    • (2002) Science , vol.296 , pp. 158-162
    • Kosak, S.T.1    Skok, J.A.2    Medina, K.L.3    Riblet, R.4    Le Beau, M.M.5    Fisher, A.G.6    Singh, H.7
  • 26
    • 0035316574 scopus 로고    scopus 로고
    • Chromosome territories, nuclear architecture and gene regulation in mammalian cells
    • Cremer, T. and Cremer, C. (2001) Chromosome territories, nuclear architecture and gene regulation in mammalian cells. Nat. Rev. Genet. 2, 292-301
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 292-301
    • Cremer, T.1    Cremer, C.2
  • 27
    • 10444232746 scopus 로고    scopus 로고
    • Chromatin organization in the mammalian nucleus
    • Gilbert, N., Gilchrist, S. and Bickmore, W.A. (2005). Chromatin organization in the mammalian nucleus. Int. Rev. Cytol. 242, 283-336
    • (2005) Int. Rev. Cytol. , vol.242 , pp. 283-336
    • Gilbert, N.1    Gilchrist, S.2    Bickmore, W.A.3
  • 31
    • 33846283384 scopus 로고    scopus 로고
    • Dynamic genome architecture in the nuclear space: Regulation of gene expression in three dimensions
    • Lanctôt, C., Cheutin, T., Cremer, M., Cavalli, G. and Cremer, T. (2007) Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions. Nat. Rev. Genet. 8, 104-115
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 104-115
    • Lanctôt, C.1    Cheutin, T.2    Cremer, M.3    Cavalli, G.4    Cremer, T.5
  • 32
    • 0036061468 scopus 로고    scopus 로고
    • Subchromosomal positioning of the epidermal differentiation complex (EDC) in keratinocyte and lymphoblast interphase nuclei
    • Williams, R.R.E., Broad, S., Sheer, D. and Ragoussis, J. (2002) Subchromosomal positioning of the epidermal differentiation complex (EDC) in keratinocyte and lymphoblast interphase nuclei. Exp. Cell Res. 272, 163-175
    • (2002) Exp. Cell Res. , vol.272 , pp. 163-175
    • Williams, R.R.E.1    Broad, S.2    Sheer, D.3    Ragoussis, J.4
  • 34
    • 35548975211 scopus 로고    scopus 로고
    • Functional organisation of the genome during interphase
    • Pombo, A. and Branco, M.R. (2007) Functional organisation of the genome during interphase. Curr. Opin. Genet. Dev. 17, 451-455
    • (2007) Curr. Opin. Genet. Dev. , vol.17 , pp. 451-455
    • Pombo, A.1    Branco, M.R.2
  • 37
    • 77649199221 scopus 로고    scopus 로고
    • S phase progression in mammalian cells: Modelling the influence of nuclear organization
    • Shaw, A., Olivares-Chauvet, P., Maya-Mendoza, A. and Jackson, D.A. (2010) S phase progression in mammalian cells: modelling the influence of nuclear organization. Chromosome Res. 18, 163-178
    • (2010) Chromosome Res. , vol.18 , pp. 163-178
    • Shaw, A.1    Olivares-Chauvet, P.2    Maya-Mendoza, A.3    Jackson, D.A.4
  • 38
    • 48349094384 scopus 로고    scopus 로고
    • Unraveling the microenvironmental influences on the normal mammary gland and breast cancer
    • Weigelt, B. and Bissell, M.J. (2008) Unraveling the microenvironmental influences on the normal mammary gland and breast cancer. Semin. Cancer Biol. 18, 311-321
    • (2008) Semin. Cancer Biol. , vol.18 , pp. 311-321
    • Weigelt, B.1    Bissell, M.J.2
  • 40
    • 0021675784 scopus 로고
    • Organization of the higher-order chromatin loop: Specific DNA attachment sites on nuclear scaffold
    • Mirkovitch, J., Mirault, M.E. and Laemmli, U.K. (1984) Organization of the higher-order chromatin loop: specific DNA attachment sites on nuclear scaffold. Cell 39, 223-232
    • (1984) Cell , vol.39 , pp. 223-232
    • Mirkovitch, J.1    Mirault, M.E.2    Laemmli, U.K.3
  • 41
    • 0027311843 scopus 로고
    • Visualization of replication factories attached to a nucleoskeleton
    • Hozak, P., Hassan, A.B., Jackson, D.A. and Cook, P.R. (1993) Visualization of replication factories attached to a nucleoskeleton. Cell 73, 361-373
    • (1993) Cell , vol.73 , pp. 361-373
    • Hozak, P.1    Hassan, A.B.2    Jackson, D.A.3    Cook, P.R.4
  • 42
    • 0028038215 scopus 로고
    • Replication factories and nuclear bodies: The ultrastructural characterization of replication sites during the cell cycle
    • Hozak, P., Jackson, D.A. and Cook, P.R. (1994) Replication factories and nuclear bodies: the ultrastructural characterization of replication sites during the cell cycle. J. Cell Sci. 107, 2191-2202
    • (1994) J. Cell Sci. , vol.107 , pp. 2191-2202
    • Hozak, P.1    Jackson, D.A.2    Cook, P.R.3
  • 44
    • 41649097238 scopus 로고    scopus 로고
    • Nuclear lamins: Major factors in the structural organization and function of the nucleus and chromatin
    • Dechat, T., Pfleghaar, K., Sengupta, K., Shimi, T., Shumaker, D.K., Solimando, L. and Goldman, R.D. (2008) Nuclear lamins: major factors in the structural organization and function of the nucleus and chromatin. Genes Dev. 22, 832-853
    • (2008) Genes Dev. , vol.22 , pp. 832-853
    • Dechat, T.1    Pfleghaar, K.2    Sengupta, K.3    Shimi, T.4    Shumaker, D.K.5    Solimando, L.6    Goldman, R.D.7
  • 49
    • 70449394488 scopus 로고    scopus 로고
    • Reduced expression of lamin A/C results in modified cell signaling and metabolism coupled with changes in expression of structural proteins
    • Chen, S., Martin, C., Maya-Mendoza, A., Tang, C.W., Lovrić, J., Sims, P.F. and Jackson, D.A. (2009) Reduced expression of lamin A/C results in modified cell signaling and metabolism coupled with changes in expression of structural proteins. J. Proteome Res. 8, 5196-5211
    • (2009) J. Proteome Res. , vol.8 , pp. 5196-5211
    • Chen, S.1    Martin, C.2    Maya-Mendoza, A.3    Tang, C.W.4    Lovrić, J.5    Sims, P.F.6    Jackson, D.A.7
  • 53
    • 0035834009 scopus 로고    scopus 로고
    • Nuclear relocation of a transactivator subunit precedes target gene activation
    • Francastel, C., Magis, W. and Groudine, M. (2001) Nuclear relocation of a transactivator subunit precedes target gene activation. Proc. Natl. Acad. Sci. U.S.A. 98, 12120-12125
    • (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , pp. 12120-12125
    • Francastel, C.1    Magis, W.2    Groudine, M.3
  • 55
    • 0036574913 scopus 로고    scopus 로고
    • Unravelling heterochromatin: Competition between positive and negative factors regulates accessibility
    • Dillon, N. and Festenstein, R. (2002) Unravelling heterochromatin: competition between positive and negative factors regulates accessibility. Trends Genet. 18, 252-258
    • (2002) Trends Genet. , vol.18 , pp. 252-258
    • Dillon, N.1    Festenstein, R.2
  • 56
    • 59649097916 scopus 로고    scopus 로고
    • Joining the loops: Beta-globin gene regulation
    • Noordermeer, D. and de Laat, W.. (2008) Joining the loops: beta-globin gene regulation. IUBMB Life 60, 824-833
    • (2008) IUBMB Life , vol.60 , pp. 824-833
    • Noordermeer, D.1    De Laat, W.2
  • 58
    • 0034103927 scopus 로고    scopus 로고
    • Transcriptional augmentation: Modulation of gene expression by scaffold/matrix attached regions (S/MAR elements)
    • Bode, J., Benham, C., Knopp, A. and Mielke, C. (2000) Transcriptional augmentation: modulation of gene expression by scaffold/matrix attached regions (S/MAR elements). Crit. Rev. Eukaryotic Gene Expr. 10, 73-90
    • (2000) Crit. Rev. Eukaryotic Gene Expr. , vol.10 , pp. 73-90
    • Bode, J.1    Benham, C.2    Knopp, A.3    Mielke, C.4
  • 59
    • 17444369067 scopus 로고    scopus 로고
    • Remote control of gene transcription
    • West, A.G. and Fraser, P. (2005) Remote control of gene transcription. Hum. Mol. Genet. 14, R101-R111
    • (2005) Hum. Mol. Genet. , vol.14
    • West, A.G.1    Fraser, P.2
  • 60
    • 67549119096 scopus 로고    scopus 로고
    • CTCF: Master weaver of the genome
    • Phillips, J.E. and Corces, V.G. (2009) CTCF: master weaver of the genome. Cell 137, 1194-1211
    • (2009) Cell , vol.137 , pp. 1194-1211
    • Phillips, J.E.1    Corces, V.G.2
  • 63
    • 0030589682 scopus 로고    scopus 로고
    • The localization of sites containing nascent RNA and splicing factors
    • Pombo, A. and Cook, P.R. (1996) The localization of sites containing nascent RNA and splicing factors. Exp. Cell Res. 229, 201-203
    • (1996) Exp. Cell Res. , vol.229 , pp. 201-203
    • Pombo, A.1    Cook, P.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.