메뉴 건너뛰기




Volumn 75, Issue 3, 2011, Pages 277-290

Functional analysis of the grapevine paralogs of the SMG7 NMD factor using a heterolog VIGS-based gene depletion-complementation system

Author keywords

Gene duplication; Grapevine; NMD; Plant; SMG7; VIGS

Indexed keywords

DICOTYLEDONEAE; EUKARYOTA; MAMMALIA; VITIS;

EID: 79151481010     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-010-9726-0     Document Type: Article
Times cited : (15)

References (54)
  • 1
    • 8544253956 scopus 로고    scopus 로고
    • A faux 3′-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay
    • Amrani N, Ganesan R, Kervestin S, Mangus DA, Ghosh S, Jacobson A (2004) A faux 3′-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay. Nature 432: 112-118.
    • (2004) Nature , vol.432 , pp. 112-118
    • Amrani, N.1    Ganesan, R.2    Kervestin, S.3    Mangus, D.A.4    Ghosh, S.5    Jacobson, A.6
  • 2
    • 0037415691 scopus 로고    scopus 로고
    • SMG-5, required for C. elegans nonsense-mediated mRNA decay, associates with SMG-2 and protein phosphatase 2A
    • Anders KR, Grimson A, Anderson P (2003) SMG-5, required for C. elegans nonsense-mediated mRNA decay, associates with SMG-2 and protein phosphatase 2A. EMBO J 22: 641-650.
    • (2003) EMBO J , vol.22 , pp. 641-650
    • Anders, K.R.1    Grimson, A.2    Anderson, P.3
  • 3
    • 33745817833 scopus 로고    scopus 로고
    • UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis
    • Arciga-Reyes L, Wootton L, Kieffer M, Davies B (2006) UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis. Plant J 47: 480-489.
    • (2006) Plant J , vol.47 , pp. 480-489
    • Arciga-Reyes, L.1    Wootton, L.2    Kieffer, M.3    Davies, B.4
  • 4
    • 33744994837 scopus 로고    scopus 로고
    • EJC-independent degradation of nonsense immunoglobulin-mu mRNA depends on 3′ UTR length
    • Buhler M, Steiner S, Mohn F, Paillusson A, Muhlemann O (2006) EJC-independent degradation of nonsense immunoglobulin-mu mRNA depends on 3′ UTR length. Nat Struct Mol Biol 13: 462-464.
    • (2006) Nat Struct Mol Biol , vol.13 , pp. 462-464
    • Buhler, M.1    Steiner, S.2    Mohn, F.3    Paillusson, A.4    Muhlemann, O.5
  • 5
    • 0032940802 scopus 로고    scopus 로고
    • smg-7 is required for mRNA surveillance in Caenorhabditis elegans
    • Cali BM, Kuchma SL, Latham J, Anderson P (1999) smg-7 is required for mRNA surveillance in Caenorhabditis elegans. Genetics 151: 605-616.
    • (1999) Genetics , vol.151 , pp. 605-616
    • Cali, B.M.1    Kuchma, S.L.2    Latham, J.3    Anderson, P.4
  • 6
    • 77951635682 scopus 로고    scopus 로고
    • Comparative sequence analyses indicate that Coffea (Asterids) and Vitis (Rosids) derive from the same paleo-hexaploid ancestral genome
    • Cenci A, Combes MC, Lashermes P (2010) Comparative sequence analyses indicate that Coffea (Asterids) and Vitis (Rosids) derive from the same paleo-hexaploid ancestral genome. Mol Genet Genomics 283: 493-501.
    • (2010) Mol Genet Genomics , vol.283 , pp. 493-501
    • Cenci, A.1    Combes, M.C.2    Lashermes, P.3
  • 10
    • 0042025014 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay in Drosophila: at the intersection of the yeast and mammalian pathways
    • Gatfield D, Unterholzner L, Ciccarelli FD, Bork P, Izaurralde E (2003) Nonsense-mediated mRNA decay in Drosophila: at the intersection of the yeast and mammalian pathways. EMBO J 22: 3960-3970.
    • (2003) EMBO J , vol.22 , pp. 3960-3970
    • Gatfield, D.1    Unterholzner, L.2    Ciccarelli, F.D.3    Bork, P.4    Izaurralde, E.5
  • 11
    • 66049128566 scopus 로고    scopus 로고
    • Distinguishing among evolutionary models for the maintenance of gene duplicates
    • Hahn MW (2009) Distinguishing among evolutionary models for the maintenance of gene duplicates. J Hered 100: 605-617.
    • (2009) J Hered , vol.100 , pp. 605-617
    • Hahn, M.W.1
  • 12
    • 0033101716 scopus 로고    scopus 로고
    • Stochastic and nonstochastic post-transcriptional silencing of chitinase and beta-1, 3-glucanase genes involves increased RNA turnover-possible role for ribosome-independent RNA degradation
    • Holtorf H, Schob H, Kunz C, Waldvogel R, Meins F Jr (1999) Stochastic and nonstochastic post-transcriptional silencing of chitinase and beta-1, 3-glucanase genes involves increased RNA turnover-possible role for ribosome-independent RNA degradation. Plant Cell 11: 471-484.
    • (1999) Plant Cell , vol.11 , pp. 471-484
    • Holtorf, H.1    Schob, H.2    Kunz, C.3    Waldvogel, R.4    Meins Jr, F.5
  • 13
    • 27144540254 scopus 로고    scopus 로고
    • UPF3 suppresses aberrant spliced mRNA in Arabidopsis
    • Hori K, Watanabe Y (2005) UPF3 suppresses aberrant spliced mRNA in Arabidopsis. Plant J 43: 530-540.
    • (2005) Plant J , vol.43 , pp. 530-540
    • Hori, K.1    Watanabe, Y.2
  • 14
    • 34547659870 scopus 로고    scopus 로고
    • Context analysis of termination codons in mRNA that are recognized by plant NMD
    • Hori K, Watanabe Y (2007) Context analysis of termination codons in mRNA that are recognized by plant NMD. Plant Cell Physiol 48: 1072-1078.
    • (2007) Plant Cell Physiol , vol.48 , pp. 1072-1078
    • Hori, K.1    Watanabe, Y.2
  • 15
    • 57049126216 scopus 로고    scopus 로고
    • SMG6 is the catalytic endonuclease that cleaves mRNAs containing nonsense codons in metazoan
    • Huntzinger E, Kashima I, Fauser M, Sauliere J, Izaurralde E (2008) SMG6 is the catalytic endonuclease that cleaves mRNAs containing nonsense codons in metazoan. RNA 14: 2609-2617.
    • (2008) Rna , vol.14 , pp. 2609-2617
    • Huntzinger, E.1    Kashima, I.2    Fauser, M.3    Sauliere, J.4    Izaurralde, E.5
  • 17
    • 32044435368 scopus 로고    scopus 로고
    • Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay
    • Kashima I, Yamashita A, Izumi N, Kataoka N, Morishita R, Hoshino S, Ohno M, Dreyfuss G, Ohno S (2006) Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay. Genes Dev 20: 355-367.
    • (2006) Genes Dev , vol.20 , pp. 355-367
    • Kashima, I.1    Yamashita, A.2    Izumi, N.3    Kataoka, N.4    Morishita, R.5    Hoshino, S.6    Ohno, M.7    Dreyfuss, G.8    Ohno, S.9
  • 19
    • 33845622065 scopus 로고    scopus 로고
    • Both introns and long 3′-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants
    • Kertesz S, Kerenyi Z, Merai Z, Bartos I, Palfy T, Barta E, Silhavy D (2006) Both introns and long 3′-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants. Nucleic Acids Res 34: 6147-6157.
    • (2006) Nucleic Acids Res , vol.34 , pp. 6147-6157
    • Kertesz, S.1    Kerenyi, Z.2    Merai, Z.3    Bartos, I.4    Palfy, T.5    Barta, E.6    Silhavy, D.7
  • 21
    • 0034672093 scopus 로고    scopus 로고
    • The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions
    • Le Hir H, Izaurralde E, Maquat LE, Moore MJ (2000) The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions. EMBO J 19: 6860-6869.
    • (2000) EMBO J , vol.19 , pp. 6860-6869
    • Le Hir, H.1    Izaurralde, E.2    Maquat, L.E.3    Moore, M.J.4
  • 22
    • 0035801373 scopus 로고    scopus 로고
    • The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay
    • Le Hir H, Gatfield D, Izaurralde E, Moore MJ (2001) The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay. EMBO J 20: 4987-4997.
    • (2001) EMBO J , vol.20 , pp. 4987-4997
    • Le Hir, H.1    Gatfield, D.2    Izaurralde, E.3    Moore, M.J.4
  • 23
    • 34247556560 scopus 로고    scopus 로고
    • Mechanistic insights and identification of two novel factors in the C. elegans NMD pathway
    • Longman D, Plasterk RH, Johnstone IL, Caceres JF (2007) Mechanistic insights and identification of two novel factors in the C. elegans NMD pathway. Genes Dev 21: 1075-1085.
    • (2007) Genes Dev , vol.21 , pp. 1075-1085
    • Longman, D.1    Plasterk, R.H.2    Johnstone, I.L.3    Caceres, J.F.4
  • 24
    • 38049082181 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae Ebs1p is a putative ortholog of human Smg7 and promotes nonsense-mediated mRNA decay
    • Luke B, Azzalin CM, Hug N, Deplazes A, Peter M, Lingner J (2007) Saccharomyces cerevisiae Ebs1p is a putative ortholog of human Smg7 and promotes nonsense-mediated mRNA decay. Nucleic Acids Res 35: 7688-7697.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7688-7697
    • Luke, B.1    Azzalin, C.M.2    Hug, N.3    Deplazes, A.4    Peter, M.5    Lingner, J.6
  • 25
    • 45449118785 scopus 로고    scopus 로고
    • Recognition of nonsense mRNA: towards a unified model
    • Muhlemann O (2008) Recognition of nonsense mRNA: towards a unified model. Biochem Soc Trans 36: 497-501.
    • (2008) Biochem Soc Trans , vol.36 , pp. 497-501
    • Muhlemann, O.1
  • 27
    • 0032104190 scopus 로고    scopus 로고
    • A rule for termination-codon position within intron-containing genes: when nonsense affects RNA abundance
    • Nagy E, Maquat LE (1998) A rule for termination-codon position within intron-containing genes: when nonsense affects RNA abundance. Trends Biochem Sci 23: 198-199.
    • (1998) Trends Biochem Sci , vol.23 , pp. 198-199
    • Nagy, E.1    Maquat, L.E.2
  • 28
    • 70350216071 scopus 로고    scopus 로고
    • Plant upstream ORFs can trigger nonsense-mediated mRNA decay in a size-dependent manner
    • Nyiko T, Sonkoly B, Merai Z, Benkovics AH, Silhavy D (2009) Plant upstream ORFs can trigger nonsense-mediated mRNA decay in a size-dependent manner. Plant Mol Biol 71: 367-378.
    • (2009) Plant Mol Biol , vol.71 , pp. 367-378
    • Nyiko, T.1    Sonkoly, B.2    Merai, Z.3    Benkovics, A.H.4    Silhavy, D.5
  • 30
    • 0038157152 scopus 로고    scopus 로고
    • Dosage sensitivity and the evolution of gene families in yeast
    • Papp B, Pal C, Hurst LD (2003) Dosage sensitivity and the evolution of gene families in yeast. Nature 424: 194-197.
    • (2003) Nature , vol.424 , pp. 194-197
    • Papp, B.1    Pal, C.2    Hurst, L.D.3
  • 31
    • 25444468618 scopus 로고    scopus 로고
    • Noise in gene expression: origins, consequences, and control
    • Raser JM, O'Shea EK (2005) Noise in gene expression: origins, consequences, and control. Science 309: 2010-2013.
    • (2005) Science , vol.309 , pp. 2010-2013
    • Raser, J.M.1    O'Shea, E.K.2
  • 32
    • 0035144638 scopus 로고    scopus 로고
    • Technical advance. Tobacco rattle virus as a vector for analysis of gene function by silencing
    • Ratcliff F, Martin-Hernandez AM, Baulcombe DC (2001) Technical advance. Tobacco rattle virus as a vector for analysis of gene function by silencing. Plant J 25: 237-245.
    • (2001) Plant J , vol.25 , pp. 237-245
    • Ratcliff, F.1    Martin-Hernandez, A.M.2    Baulcombe, D.C.3
  • 33
    • 25844435702 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets
    • Rehwinkel J, Letunic I, Raes J, Bork P, Izaurralde E (2005) Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets. RNA 11: 1530-1544.
    • (2005) Rna , vol.11 , pp. 1530-1544
    • Rehwinkel, J.1    Letunic, I.2    Raes, J.3    Bork, P.4    Izaurralde, E.5
  • 34
    • 33750356583 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay: target genes and functional diversification of effectors
    • Rehwinkel J, Raes J, Izaurralde E (2006) Nonsense-mediated mRNA decay: target genes and functional diversification of effectors. Trends Biochem Sci 31: 639-646.
    • (2006) Trends Biochem Sci , vol.31 , pp. 639-646
    • Rehwinkel, J.1    Raes, J.2    Izaurralde, E.3
  • 36
    • 0033180582 scopus 로고    scopus 로고
    • Structural analysis of 14-3-3 phosphopeptide complexes identifies a dual role for the nuclear export signal of 14-3-3 in ligand binding
    • Rittinger K, Budman J, Xu J, Volinia S, Cantley LC, Smerdon SJ, Gamblin SJ, Yaffe MB (1999) Structural analysis of 14-3-3 phosphopeptide complexes identifies a dual role for the nuclear export signal of 14-3-3 in ligand binding. Mol Cell 4: 153-166.
    • (1999) Mol Cell , vol.4 , pp. 153-166
    • Rittinger, K.1    Budman, J.2    Xu, J.3    Volinia, S.4    Cantley, L.C.5    Smerdon, S.J.6    Gamblin, S.J.7    Yaffe, M.B.8
  • 40
    • 0037124354 scopus 로고    scopus 로고
    • A viral protein suppresses RNA silencing and binds silencing-generated, 21--25-nucleotide double-stranded RNAs
    • Silhavy D, Molnar A, Lucioli A, Szittya G, Hornyik C, Tavazza M, Burgyan J (2002) A viral protein suppresses RNA silencing and binds silencing-generated, 21--25-nucleotide double-stranded RNAs. EMBO J 21: 3070-3080.
    • (2002) EMBO J , vol.21 , pp. 3070-3080
    • Silhavy, D.1    Molnar, A.2    Lucioli, A.3    Szittya, G.4    Hornyik, C.5    Tavazza, M.6    Burgyan, J.7
  • 41
    • 58649117962 scopus 로고    scopus 로고
    • The mammalian nonsense-mediated mRNA decay pathway: to decay or not to decay! Which players make the decision?
    • Silva AL, Romao L (2009) The mammalian nonsense-mediated mRNA decay pathway: to decay or not to decay! Which players make the decision? FEBS Lett 583: 499-505.
    • (2009) FEBS Lett , vol.583 , pp. 499-505
    • Silva, A.L.1    Romao, L.2
  • 42
    • 43249084802 scopus 로고    scopus 로고
    • A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay
    • Singh G, Rebbapragada I, Lykke-Andersen J (2008) A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay. PLoS Biol 6: e111.
    • (2008) PLoS Biol , vol.6
    • Singh, G.1    Rebbapragada, I.2    Lykke-Andersen, J.3
  • 44
    • 67649307109 scopus 로고    scopus 로고
    • Processing bodies are not required for mammalian nonsense-mediated mRNA decay
    • Stalder L, Muhlemann O (2009) Processing bodies are not required for mammalian nonsense-mediated mRNA decay. RNA 15: 1265-1273.
    • (2009) Rna , vol.15 , pp. 1265-1273
    • Stalder, L.1    Muhlemann, O.2
  • 45
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 46
    • 8844245615 scopus 로고    scopus 로고
    • SMG7 acts as a molecular link between mRNA surveillance and mRNA decay
    • Unterholzner L, Izaurralde E (2004) SMG7 acts as a molecular link between mRNA surveillance and mRNA decay. Mol Cell 16: 587-596.
    • (2004) Mol Cell , vol.16 , pp. 587-596
    • Unterholzner, L.1    Izaurralde, E.2
  • 47
    • 16644362498 scopus 로고    scopus 로고
    • Efficient virus-induced gene silencing in roots using a modified tobacco rattle virus vector
    • Valentine T, Shaw J, Blok VC, Phillips MS, Oparka KJ, Lacomme C (2004) Efficient virus-induced gene silencing in roots using a modified tobacco rattle virus vector. Plant Physiol 136: 3999-4009.
    • (2004) Plant Physiol , vol.136 , pp. 3999-4009
    • Valentine, T.1    Shaw, J.2    Blok, V.C.3    Phillips, M.S.4    Oparka, K.J.5    Lacomme, C.6
  • 50
    • 58149216280 scopus 로고    scopus 로고
    • Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter
    • Wu X, Shiroto Y, Kishitani S, Ito Y, Toriyama K (2009) Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter. Plant Cell Rep 28: 21-30.
    • (2009) Plant Cell Rep , vol.28 , pp. 21-30
    • Wu, X.1    Shiroto, Y.2    Kishitani, S.3    Ito, Y.4    Toriyama, K.5
  • 51
    • 0035449691 scopus 로고    scopus 로고
    • Human SMG-1, a novel phosphatidylinositol 3-kinase-related protein kinase, associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense-mediated mRNA decay
    • Yamashita A, Ohnishi T, Kashima I, Taya Y, Ohno S (2001) Human SMG-1, a novel phosphatidylinositol 3-kinase-related protein kinase, associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense-mediated mRNA decay. Genes Dev 15: 2215-2228.
    • (2001) Genes Dev , vol.15 , pp. 2215-2228
    • Yamashita, A.1    Ohnishi, T.2    Kashima, I.3    Taya, Y.4    Ohno, S.5
  • 52
    • 33745099773 scopus 로고    scopus 로고
    • Arabidopsis UPF1 RNA helicase for nonsense-mediated mRNA decay is involved in seed size control and is essential for growth
    • Yoine M, Nishii T, Nakamura K (2006a) Arabidopsis UPF1 RNA helicase for nonsense-mediated mRNA decay is involved in seed size control and is essential for growth. Plant Cell Physiol 47: 572-580.
    • (2006) Plant Cell Physiol , vol.47 , pp. 572-580
    • Yoine, M.1    Nishii, T.2    Nakamura, K.3
  • 53
    • 33745112583 scopus 로고    scopus 로고
    • The lba1 mutation of UPF1 RNA helicase involved in nonsense-mediated mRNA decay causes pleiotropic phenotypic changes and altered sugar signalling in Arabidopsis
    • Yoine M, Ohto MA, Onai K, Mita S, Nakamura K (2006b) The lba1 mutation of UPF1 RNA helicase involved in nonsense-mediated mRNA decay causes pleiotropic phenotypic changes and altered sugar signalling in Arabidopsis. Plant J 47: 49-62.
    • (2006) Plant J , vol.47 , pp. 49-62
    • Yoine, M.1    Ohto, M.A.2    Onai, K.3    Mita, S.4    Nakamura, K.5
  • 54
    • 42149119520 scopus 로고    scopus 로고
    • Agroinfiltration of grapevine leaves for fast transient assays of gene expression and for long-term production of stable transformed cells
    • Zottini M, Barizza E, Costa A, Formentin E, Ruberti C, Carimi F, Lo Schiavo F (2008) Agroinfiltration of grapevine leaves for fast transient assays of gene expression and for long-term production of stable transformed cells. Plant Cell Rep 27: 845-853.
    • (2008) Plant Cell Rep , vol.27 , pp. 845-853
    • Zottini, M.1    Barizza, E.2    Costa, A.3    Formentin, E.4    Ruberti, C.5    Carimi, F.6    Lo Schiavo, F.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.